RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W SSN8P47821 323 aa12.11□□□□□ -0.47
DEP1YAL013W GIM3P53900 129 aa12.11□□□□□ -0.47
DEP1YAL013W ERP4Q12450 207 aa12.11□□□□□ -0.47
DEP1YAL013W PET20Q99373 253 aa12.11□□□□□ -0.47
DEP1YAL013W MET3P08536 511 aa12.1□□□□□ -0.47
DEP1YAL013W RPL35AP0CX84 120 aaKnown RBP12.1□□□□□ -0.47
DEP1YAL013W RPL35BP0CX85 120 aaKnown RBP12.1□□□□□ -0.47
DEP1YAL013W MSI1P13712 422 aa12.1□□□□□ -0.47
DEP1YAL013W YBL010CP32788 280 aa12.1□□□□□ -0.47
DEP1YAL013W CLB6P32943 380 aa12.1□□□□□ -0.47
DEP1YAL013W UFD1P53044 361 aa12.1□□□□□ -0.47
DEP1YAL013W MRL1Q06815 381 aa12.1□□□□□ -0.47
DEP1YAL013W TRR1P29509 319 aaKnown RBP12.09□□□□□ -0.47
DEP1YAL013W GLC7P32598 312 aaKnown RBP12.09□□□□□ -0.47
DEP1YAL013W RRF1P38771 230 aa12.09□□□□□ -0.47
DEP1YAL013W GNA1P43577 159 aaPredicted RBP12.09□□□□□ -0.47
DEP1YAL013W ARG5,6Q01217 863 aa12.09□□□□□ -0.47
DEP1YAL013W TRM13Q12383 476 aa12.09□□□□□ -0.47
DEP1YAL013W RPL6BP05739 176 aaKnown RBP12.08□□□□□ -0.48
DEP1YAL013W LAP3Q01532 483 aaKnown RBP RIP-Chip data12.08□□□□□ -0.48not detected
DEP1YAL013W ACS1Q01574 713 aa12.08□□□□□ -0.48
DEP1YAL013W YPR098CQ06089 161 aa12.08□□□□□ -0.48
DEP1YAL013W MRP17P28778 131 aa12.07□□□□□ -0.48
DEP1YAL013W YIL029CP40538 142 aa12.07□□□□□ -0.48
DEP1YAL013W YML018CQ03730 393 aa12.07□□□□□ -0.48
DEP1YAL013W SPS4P09937 338 aa12.06□□□□□ -0.48
DEP1YAL013W CKS1P20486 150 aaKnown RBP12.06□□□□□ -0.48
DEP1YAL013W FAT1P38225 669 aa12.06□□□□□ -0.48
DEP1YAL013W ARO9P38840 513 aaPredicted RBP12.06□□□□□ -0.48
DEP1YAL013W YER079WP40052 210 aaKnown RBP12.06□□□□□ -0.48
DEP1YAL013W EGT2P42835 1041 aa12.06□□□□□ -0.48
DEP1YAL013W OKP1P53298 406 aa12.06□□□□□ -0.48
DEP1YAL013W YPL077CQ02831 240 aa12.06□□□□□ -0.48
DEP1YAL013W YDC1Q02896 317 aa12.06□□□□□ -0.48
DEP1YAL013W NRG1Q03125 231 aa12.06□□□□□ -0.48
DEP1YAL013W YOR186WQ08560 144 aa12.06□□□□□ -0.48
DEP1YAL013W PAN3P36102 679 aaPredicted RBP12.05□□□□□ -0.48
DEP1YAL013W VMA22P38784 181 aa12.05□□□□□ -0.48
DEP1YAL013W PIG2P40187 538 aa12.05□□□□□ -0.48
DEP1YAL013W RPS0BP46654 252 aaKnown RBP12.05□□□□□ -0.48
DEP1YAL013W MEC1P38111 2368 aa12.04□□□□□ -0.48
DEP1YAL013W GAL1P04385 528 aa12.04□□□□□ -0.48
DEP1YAL013W YCR101CP25607 182 aa12.04□□□□□ -0.48
DEP1YAL013W ERG3P32353 365 aa12.04□□□□□ -0.48
DEP1YAL013W YBR197CP38306 217 aa12.04□□□□□ -0.48
DEP1YAL013W CCS1P40202 249 aaKnown RBP12.04□□□□□ -0.48
DEP1YAL013W PIN3Q06449 215 aa12.04□□□□□ -0.48
DEP1YAL013W RNH203Q12338 110 aa12.04□□□□□ -0.48
DEP1YAL013W MPD1Q12404 318 aaKnown RBP12.04□□□□□ -0.48
DEP1YAL013W FIG1P38224 298 aa12.03□□□□□ -0.48
DEP1YAL013W NIF3P53081 288 aa12.03□□□□□ -0.48
DEP1YAL013W YDR248CQ03786 193 aa12.03□□□□□ -0.48
DEP1YAL013W GAT3Q07928 141 aa12.03□□□□□ -0.48
DEP1YAL013W RPL25P04456 142 aaKnown RBP12.02□□□□□ -0.49
DEP1YAL013W MIR1P23641 311 aaKnown RBP12.02□□□□□ -0.49
DEP1YAL013W OCH1P31755 480 aa12.02□□□□□ -0.49
DEP1YAL013W POP8P38208 133 aa12.02□□□□□ -0.49
DEP1YAL013W YPC1P38298 316 aa12.02□□□□□ -0.49
DEP1YAL013W LNP1P38878 278 aa12.02□□□□□ -0.49
DEP1YAL013W YJR011CP47086 261 aaPredicted RBP12.02□□□□□ -0.49
DEP1YAL013W MRPL50P53724 139 aa12.02□□□□□ -0.49
DEP1YAL013W REP2P03872 296 aa12.01□□□□□ -0.49
DEP1YAL013W SSA3P09435 649 aaKnown RBP12.01□□□□□ -0.49
DEP1YAL013W CUP1-1P0CX80 61 aa12.01□□□□□ -0.49
DEP1YAL013W CUP1-2P0CX81 61 aa12.01□□□□□ -0.49
DEP1YAL013W ACB1P31787 87 aa12.01□□□□□ -0.49
DEP1YAL013W YOX1P34161 385 aa12.01□□□□□ -0.49
DEP1YAL013W YBR220CP38318 560 aa12.01□□□□□ -0.49
DEP1YAL013W YGP1P38616 354 aaKnown RBP12.01□□□□□ -0.49
DEP1YAL013W MRX5P47007 382 aa12.01□□□□□ -0.49
DEP1YAL013W UBC13P52490 153 aa12.01□□□□□ -0.49
DEP1YAL013W ORM1P53224 222 aa12.01□□□□□ -0.49
DEP1YAL013W SCP1Q08873 200 aa12.01□□□□□ -0.49
DEP1YAL013W EAF3Q12432 401 aa12.01□□□□□ -0.49
DEP1YAL013W YLL053CP0CD98 152 aa12□□□□□ -0.49
DEP1YAL013W GLY1P37303 387 aaKnown RBP12□□□□□ -0.49
DEP1YAL013W YER137CP40083 148 aaKnown RBP12□□□□□ -0.49
DEP1YAL013W TOK1P40310 691 aa12□□□□□ -0.49
DEP1YAL013W TAF4P50105 388 aa12□□□□□ -0.49
DEP1YAL013W ALG9P53868 555 aaKnown RBP12□□□□□ -0.49
DEP1YAL013W YLR224WQ05947 369 aa12□□□□□ -0.49
DEP1YAL013W GRC3Q07845 632 aa12□□□□□ -0.49
DEP1YAL013W YLR365WQ7LIF2 110 aa12□□□□□ -0.49
DEP1YAL013W UBA3Q99344 299 aa12□□□□□ -0.49
DEP1YAL013W SEN2P16658 377 aa11.99□□□□□ -0.49
DEP1YAL013W IMP1P28627 190 aa11.99□□□□□ -0.49
DEP1YAL013W EDS1P38073 919 aa11.99□□□□□ -0.49
DEP1YAL013W PRS2P38620 318 aaKnown RBP11.99□□□□□ -0.49
DEP1YAL013W NAT2P37293 288 aa11.98□□□□□ -0.49
DEP1YAL013W AIM46P38885 310 aa11.98□□□□□ -0.49
DEP1YAL013W YMR144WP40214 342 aaKnown RBP11.98□□□□□ -0.49
DEP1YAL013W YMR279CQ03263 540 aa11.98□□□□□ -0.49
DEP1YAL013W PLP1Q04004 230 aa11.98□□□□□ -0.49
DEP1YAL013W YMR254CQ04838 102 aa11.98□□□□□ -0.49
DEP1YAL013W RTT103Q05543 409 aa11.98□□□□□ -0.49
DEP1YAL013W YDL086WQ07505 273 aa11.98□□□□□ -0.49
DEP1YAL013W YNG1Q08465 219 aa11.98□□□□□ -0.49
DEP1YAL013W FRE8Q12209 686 aa11.98□□□□□ -0.49
DEP1YAL013W PET122P10355 254 aa11.97□□□□□ -0.49
DEP1YAL013W RPB7P34087 171 aa11.97□□□□□ -0.49
Retrieved 100 of 5,963 RNA–protein pairs in 23.4 ms