RNA–Protein interactions for RNA: snR54

snR54, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR54, Length 86 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR54	snR54	RAD3	P06839	778 aa		0.96	□□□□□ -2.26
snR54	snR54	TRX1	P22217	103 aa	Known RBP	0.96	□□□□□ -2.26
snR54	snR54	BLI1	P35727	113 aa		0.96	□□□□□ -2.26
snR54	snR54	ECM13	P38195	257 aa		0.96	□□□□□ -2.26
snR54	snR54	HEK2	P38199	381 aa	Known RBP RIP-Chip data	0.96	□□□□□ -2.26	not detected
snR54	snR54	YHL049C	P38722	271 aa		0.96	□□□□□ -2.26
snR54	snR54	CPD1	P53314	239 aa		0.96	□□□□□ -2.26
snR54	snR54	VBA1	Q04301	562 aa		0.96	□□□□□ -2.26
snR54	snR54	SFH1	Q06168	426 aa		0.96	□□□□□ -2.26
snR54	snR54	MHT1	Q12525	324 aa		0.96	□□□□□ -2.26
snR54	snR54	YOS9	Q99220	542 aa		0.96	□□□□□ -2.26
snR54	snR54	RPP0	P05317	312 aa	Known RBP	0.95	□□□□□ -2.26
snR54	snR54	CDC7	P06243	507 aa		0.95	□□□□□ -2.26
snR54	snR54	SGA1	P08019	549 aa		0.95	□□□□□ -2.26
snR54	snR54	RPL4A	P10664	362 aa	Known RBP	0.95	□□□□□ -2.26
snR54	snR54	GCD2	P12754	651 aa	Predicted RBP	0.95	□□□□□ -2.26
snR54	snR54	VMA2	P16140	517 aa	Known RBP	0.95	□□□□□ -2.26
snR54	snR54	MNN9	P39107	395 aa	Known RBP	0.95	□□□□□ -2.26
snR54	snR54	OSW5	P40219	148 aa		0.95	□□□□□ -2.26
snR54	snR54	RPL4B	P49626	362 aa	Known RBP	0.95	□□□□□ -2.26
snR54	snR54	MGR3	Q04472	501 aa		0.95	□□□□□ -2.26
snR54	snR54	SLD7	Q08457	257 aa		0.95	□□□□□ -2.26
snR54	snR54	TPM1	P17536	199 aa	Known RBP	0.94	□□□□□ -2.26
snR54	snR54	POF1	P25576	258 aa		0.94	□□□□□ -2.26
snR54	snR54	SMD3	P43321	101 aa	Known RBP	0.94	□□□□□ -2.26
snR54	snR54	TRM44	Q02648	567 aa	Known RBP	0.94	□□□□□ -2.26
snR54	snR54	YPR011C	Q12251	326 aa		0.94	□□□□□ -2.26
snR54	snR54	CCA1	P21269	546 aa		0.93	□□□□□ -2.26
snR54	snR54	YHB1	P39676	399 aa	Known RBP	0.93	□□□□□ -2.26
snR54	snR54	PEP8	P40335	379 aa		0.93	□□□□□ -2.26
snR54	snR54	NBP35	P52920	328 aa		0.93	□□□□□ -2.26
snR54	snR54	SWS2	P53937	143 aa		0.93	□□□□□ -2.26
snR54	snR54	DAD3	P69850	94 aa		0.93	□□□□□ -2.26
snR54	snR54	YHR032W-A	P0C5N6	59 aa		0.92	□□□□□ -2.26
snR54	snR54	VPS45	P38932	577 aa		0.92	□□□□□ -2.26
snR54	snR54	PRM9	P39551	298 aa		0.92	□□□□□ -2.26
snR54	snR54	SLX9	P53251	210 aa	Predicted RBP	0.92	□□□□□ -2.26
snR54	snR54	AAH1	P53909	347 aa		0.92	□□□□□ -2.26
snR54	snR54	YNL050C	P53952	270 aa		0.92	□□□□□ -2.26
snR54	snR54	INM2	Q05533	292 aa		0.92	□□□□□ -2.26
snR54	snR54	ARV1	Q06541	321 aa		0.92	□□□□□ -2.26
snR54	snR54	RPC40	P07703	335 aa	Known RBP	0.91	□□□□□ -2.26
snR54	snR54	YOL162W	P0CF19	215 aa		0.91	□□□□□ -2.26
snR54	snR54	FRS2	P15625	503 aa	Known RBP	0.91	□□□□□ -2.26
snR54	snR54	CWP1	P28319	239 aa		0.91	□□□□□ -2.26
snR54	snR54	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	0.91	□□□□□ -2.26	not detected
snR54	snR54	YKR045C	P36138	183 aa		0.91	□□□□□ -2.26
snR54	snR54	YER135C	P40082	130 aa		0.91	□□□□□ -2.26
snR54	snR54	LOC1	P43586	204 aa	Predicted RBP	0.91	□□□□□ -2.26
snR54	snR54	GCD14	P46959	383 aa	Predicted RBP	0.91	□□□□□ -2.26
snR54	snR54	OST2	P46964	130 aa		0.91	□□□□□ -2.26
snR54	snR54	PNC1	P53184	216 aa	Known RBP	0.91	□□□□□ -2.26
snR54	snR54	SPO19	Q03029	223 aa		0.91	□□□□□ -2.26
snR54	snR54	REX3	Q12090	404 aa		0.91	□□□□□ -2.26
snR54	snR54	PER33	Q12144	273 aa		0.91	□□□□□ -2.26
snR54	snR54	UGA1	P17649	471 aa		0.9	□□□□□ -2.27
snR54	snR54	SCL1	P21243	252 aa	Known RBP	0.9	□□□□□ -2.27
snR54	snR54	SEC22	P22214	214 aa		0.9	□□□□□ -2.27
snR54	snR54	PEX4	P29340	183 aa		0.9	□□□□□ -2.27
snR54	snR54	YGL185C	P53100	379 aa		0.9	□□□□□ -2.27
snR54	snR54	YNL260C	P53846	198 aa		0.9	□□□□□ -2.27
snR54	snR54	BBP1	Q12365	385 aa		0.9	□□□□□ -2.27
snR54	snR54	STH1	P32597	1359 aa		0.89	□□□□□ -2.27
snR54	snR54	FBA1	P14540	359 aa	Known RBP	0.89	□□□□□ -2.27
snR54	snR54	RCN1	P36054	211 aa		0.89	□□□□□ -2.27
snR54	snR54	PRS4	P38063	326 aa	Predicted RBP	0.89	□□□□□ -2.27
snR54	snR54	GLE2	P40066	365 aa		0.89	□□□□□ -2.27
snR54	snR54	CIS3	P47001	227 aa		0.89	□□□□□ -2.27
snR54	snR54	YGL034C	P53186	121 aa		0.89	□□□□□ -2.27
snR54	snR54	TIM21	P53220	239 aa		0.89	□□□□□ -2.27
snR54	snR54	NUP49	Q02199	472 aa		0.89	□□□□□ -2.27
snR54	snR54	PRM15	Q03262	622 aa		0.89	□□□□□ -2.27
snR54	snR54	MRPS8	Q03799	155 aa		0.89	□□□□□ -2.27
snR54	snR54	PEX10	Q05568	337 aa		0.89	□□□□□ -2.27
snR54	snR54	YLR179C	Q06252	201 aa	Known RBP	0.89	□□□□□ -2.27
snR54	snR54	YSR3	P23501	404 aa		0.88	□□□□□ -2.27
snR54	snR54	RCY1	P39531	840 aa		0.88	□□□□□ -2.27
snR54	snR54	BMT5	P40493	336 aa		0.88	□□□□□ -2.27
snR54	snR54	MDY2	Q12285	212 aa		0.88	□□□□□ -2.27
snR54	snR54	CTR2	P38865	189 aa		0.87	□□□□□ -2.27
snR54	snR54	LSB1	P53281	241 aa		0.87	□□□□□ -2.27
snR54	snR54	MNT4	P53745	580 aa		0.87	□□□□□ -2.27
snR54	snR54	BCP1	Q06338	283 aa		0.87	□□□□□ -2.27
snR54	snR54	ATO3	Q12359	275 aa		0.87	□□□□□ -2.27
snR54	snR54	YBL008W-A	Q3E821	79 aa		0.87	□□□□□ -2.27
snR54	snR54	Q0255	P03881	472 aa		0.86	□□□□□ -2.27
snR54	snR54	MEK1	P24719	497 aa	Predicted RBP	0.86	□□□□□ -2.27
snR54	snR54	DOG1	P38774	246 aa		0.86	□□□□□ -2.27
snR54	snR54	DSE2	P38844	325 aa		0.86	□□□□□ -2.27
snR54	snR54	SHC1	P39000	512 aa		0.86	□□□□□ -2.27
snR54	snR54	ARC15	P40518	154 aa	RIP-Chip data	0.86	□□□□□ -2.27	not detected
snR54	snR54	FMP33	P46998	180 aa		0.86	□□□□□ -2.27
snR54	snR54	CYT2	Q00873	224 aa		0.86	□□□□□ -2.27
snR54	snR54	ERV41	Q04651	352 aa		0.86	□□□□□ -2.27
snR54	snR54	CTR3	Q06686	241 aa		0.86	□□□□□ -2.27
snR54	snR54	EMP46	Q12396	444 aa		0.86	□□□□□ -2.27
snR54	snR54	SWI1	P09547	1314 aa		0.86	□□□□□ -2.27
snR54	snR54	YBR219C	P38317	127 aa		0.85	□□□□□ -2.27
snR54	snR54	HSM3	P38348	480 aa		0.85	□□□□□ -2.27
snR54	snR54	PRM10	P42946	383 aa		0.85	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 95.4 ms