RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP40	YKL012W	SWD3	P38123	315 aa		4.65	□□□□□ -1.66
PRP40	YKL012W	SHE1	P38200	338 aa		4.65	□□□□□ -1.66
PRP40	YKL012W	SNM1	P40993	198 aa		4.65	□□□□□ -1.66
PRP40	YKL012W	GAB1	P41733	394 aa		4.65	□□□□□ -1.66
PRP40	YKL012W	ALG11	P53954	548 aa	Known RBP	4.65	□□□□□ -1.66
PRP40	YKL012W	ADH6	Q04894	360 aa	Known RBP	4.65	□□□□□ -1.66
PRP40	YKL012W	YTH1	Q06102	208 aa	Predicted RBP	4.65	□□□□□ -1.66
PRP40	YKL012W	HRT3	Q12347	344 aa		4.65	□□□□□ -1.66
PRP40	YKL012W	ATG31	Q12421	196 aa		4.65	□□□□□ -1.66
PRP40	YKL012W	YSP2	Q06681	1438 aa		4.65	□□□□□ -1.66
PRP40	YKL012W	YOR093C	Q12275	1648 aa		4.65	□□□□□ -1.67
PRP40	YKL012W	CMK2	P22517	447 aa		4.65	□□□□□ -1.67
PRP40	YKL012W	SOL2	P37262	315 aa		4.65	□□□□□ -1.67
PRP40	YKL012W	YBR241C	P38142	488 aa		4.65	□□□□□ -1.67
PRP40	YKL012W	NPT1	P39683	429 aa	Known RBP	4.65	□□□□□ -1.67
PRP40	YKL012W	GCN20	P43535	752 aa	Known RBP	4.65	□□□□□ -1.67
PRP40	YKL012W	YPT32	P51996	222 aa	Known RBP	4.65	□□□□□ -1.67
PRP40	YKL012W	TAZ1	Q06510	381 aa		4.65	□□□□□ -1.67
PRP40	YKL012W	YOR376W	Q08900	122 aa		4.65	□□□□□ -1.67
PRP40	YKL012W	YBL111C	Q3E7Y5	667 aa		4.65	□□□□□ -1.67
PRP40	YKL012W	NTG1	P31378	399 aa		4.64	□□□□□ -1.67
PRP40	YKL012W	PRS4	P38063	326 aa	Predicted RBP	4.64	□□□□□ -1.67
PRP40	YKL012W	BIG1	P38813	335 aa		4.64	□□□□□ -1.67
PRP40	YKL012W	TAD2	P47058	250 aa		4.64	□□□□□ -1.67
PRP40	YKL012W	SDO1	Q07953	250 aa	Known RBP	4.64	□□□□□ -1.67
PRP40	YKL012W	BI3	Q9ZZW7	517 aa		4.64	□□□□□ -1.67
PRP40	YKL012W	SEC7	P11075	2009 aa	Known RBP	4.64	□□□□□ -1.67
PRP40	YKL012W	ISY1	P21374	235 aa	Predicted RBP	4.63	□□□□□ -1.67
PRP40	YKL012W	MRPL20	P22354	195 aa	Predicted RBP	4.63	□□□□□ -1.67
PRP40	YKL012W	IFM1	P25038	676 aa		4.63	□□□□□ -1.67
PRP40	YKL012W	PRS1	P32895	427 aa	Known RBP	4.63	□□□□□ -1.67
PRP40	YKL012W	MRPL6	P32904	214 aa		4.63	□□□□□ -1.67
PRP40	YKL012W	CSE1	P33307	960 aa		4.63	□□□□□ -1.67
PRP40	YKL012W	WSC4	P38739	605 aa		4.63	□□□□□ -1.67
PRP40	YKL012W	MNT4	P53745	580 aa		4.63	□□□□□ -1.67
PRP40	YKL012W	LIP2	Q06005	328 aa		4.63	□□□□□ -1.67
PRP40	YKL012W	YPL245W	Q12179	454 aa	Known RBP	4.63	□□□□□ -1.67
PRP40	YKL012W	WTM1	Q12363	437 aa	Known RBP	4.63	□□□□□ -1.67
PRP40	YKL012W	RPL21B	Q12672	160 aa	Known RBP	4.63	□□□□□ -1.67
PRP40	YKL012W	IQG1	Q12280	1495 aa		4.63	□□□□□ -1.67
PRP40	YKL012W	CHC1	P22137	1653 aa	Known RBP	4.63	□□□□□ -1.67
PRP40	YKL012W	NUP157	P40064	1391 aa	Known RBP	4.63	□□□□□ -1.67
PRP40	YKL012W	HIS1	P00498	297 aa	Known RBP	4.63	□□□□□ -1.67
PRP40	YKL012W	CDC42	P19073	191 aa		4.63	□□□□□ -1.67
PRP40	YKL012W	SPT4	P32914	102 aa	Predicted RBP	4.63	□□□□□ -1.67
PRP40	YKL012W	BMT2	P38278	337 aa		4.63	□□□□□ -1.67
PRP40	YKL012W	YER085C	P40058	173 aa		4.63	□□□□□ -1.67
PRP40	YKL012W	NRM1	P53718	249 aa		4.63	□□□□□ -1.67
PRP40	YKL012W	ADD37	Q03233	198 aa		4.63	□□□□□ -1.67
PRP40	YKL012W	OST6	Q03723	332 aa		4.63	□□□□□ -1.67
PRP40	YKL012W	GMC1	Q04399	608 aa		4.63	□□□□□ -1.67
PRP40	YKL012W	MIM1	Q08176	113 aa		4.63	□□□□□ -1.67
PRP40	YKL012W	YOR029W	Q12243	111 aa		4.63	□□□□□ -1.67
PRP40	YKL012W	LAG2	Q92325	660 aa		4.63	□□□□□ -1.67
PRP40	YKL012W	MRP1	P10662	321 aa	Known RBP	4.62	□□□□□ -1.67
PRP40	YKL012W	ZIP1	P31111	875 aa		4.62	□□□□□ -1.67
PRP40	YKL012W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	4.62	□□□□□ -1.67	not detected
PRP40	YKL012W	DDI1	P40087	428 aa		4.62	□□□□□ -1.67
PRP40	YKL012W	STB1	P42845	420 aa		4.62	□□□□□ -1.67
PRP40	YKL012W	RNH201	P53942	307 aa		4.62	□□□□□ -1.67
PRP40	YKL012W	KTR6	P54070	446 aa		4.62	□□□□□ -1.67
PRP40	YKL012W	CDC14	Q00684	551 aa		4.62	□□□□□ -1.67
PRP40	YKL012W	PEX30	Q06169	523 aa		4.62	□□□□□ -1.67
PRP40	YKL012W	MSN4	P33749	630 aa		4.61	□□□□□ -1.67
PRP40	YKL012W	IGD1	P43598	195 aa		4.61	□□□□□ -1.67
PRP40	YKL012W	SDS23	P53172	527 aa		4.61	□□□□□ -1.67
PRP40	YKL012W	YNR066C	P53752	436 aa		4.61	□□□□□ -1.67
PRP40	YKL012W	YNL040W	P53960	456 aa	Predicted RBP	4.61	□□□□□ -1.67
PRP40	YKL012W	PAM18	Q07914	168 aa		4.61	□□□□□ -1.67
PRP40	YKL012W	TFC7	Q12415	435 aa		4.61	□□□□□ -1.67
PRP40	YKL012W	BGL2	P15703	313 aa	Known RBP	4.6	□□□□□ -1.67
PRP40	YKL012W	SHE3	P38272	425 aa	Known RBP	4.6	□□□□□ -1.67
PRP40	YKL012W	TPS1	Q00764	495 aa	Known RBP	4.6	□□□□□ -1.67
PRP40	YKL012W	RMI1	Q02685	241 aa		4.6	□□□□□ -1.67
PRP40	YKL012W	YDR115W	Q04598	105 aa		4.6	□□□□□ -1.67
PRP40	YKL012W	CFT1	Q06632	1357 aa	Known RBP	4.6	□□□□□ -1.67
PRP40	YKL012W	VMR1	P38735	1592 aa		4.6	□□□□□ -1.67
PRP40	YKL012W	POF1	P25576	258 aa		4.6	□□□□□ -1.67
PRP40	YKL012W	YCR016W	P25617	290 aa	Known RBP	4.6	□□□□□ -1.67
PRP40	YKL012W	YKL187C	P34231	750 aa		4.6	□□□□□ -1.67
PRP40	YKL012W	EFM1	P38732	585 aa		4.6	□□□□□ -1.67
PRP40	YKL012W	VAB2	P40003	282 aa		4.6	□□□□□ -1.67
PRP40	YKL012W	RTR1	P40084	226 aa	Predicted RBP	4.6	□□□□□ -1.67
PRP40	YKL012W	SUA5	P32579	426 aa		4.59	□□□□□ -1.67
PRP40	YKL012W	SDS24	P38314	527 aa		4.59	□□□□□ -1.67
PRP40	YKL012W	DED81	P38707	554 aa	Known RBP	4.59	□□□□□ -1.67
PRP40	YKL012W	TPN1	P53099	579 aa		4.59	□□□□□ -1.67
PRP40	YKL012W	DPP1	Q05521	289 aa		4.59	□□□□□ -1.67
PRP40	YKL012W	YLR283W	Q05867	314 aa		4.59	□□□□□ -1.67
PRP40	YKL012W	SFH1	Q06168	426 aa		4.59	□□□□□ -1.67
PRP40	YKL012W	MMT2	Q08970	484 aa		4.59	□□□□□ -1.67
PRP40	YKL012W	YOR114W	Q12219	294 aa		4.59	□□□□□ -1.67
PRP40	YKL012W	MET5	P47169	1442 aa		4.59	□□□□□ -1.67
PRP40	YKL012W	TCD1	P38756	429 aa		4.58	□□□□□ -1.68
PRP40	YKL012W	TRM44	Q02648	567 aa	Known RBP	4.58	□□□□□ -1.68
PRP40	YKL012W	MRX11	Q03079	207 aa		4.58	□□□□□ -1.68
PRP40	YKL012W	MSH5	Q12175	901 aa		4.58	□□□□□ -1.68
PRP40	YKL012W	NUP192	P47054	1683 aa		4.58	□□□□□ -1.68
PRP40	YKL012W	DOP1	Q03921	1698 aa		4.58	□□□□□ -1.68
PRP40	YKL012W	LTE1	P07866	1435 aa		4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 14.6 ms