RNA–Protein interactions for RNA: YJR044C

VPS55, Transcript of Late endosomal protein involved in late endosome to vacuole transport, yeast

Gene VPS55, Length 423 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS55	YJR044C	YBR241C	P38142	488 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	LDB7	P38210	180 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	BMT2	P38278	337 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	PFS1	P38872	237 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	RPS14B	P39516	138 aa	Known RBP	1.24	□□□□□ -2.21
VPS55	YJR044C	PRM9	P39551	298 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	HEM14	P40012	539 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	RFC4	P40339	323 aa	Known RBP	1.24	□□□□□ -2.21
VPS55	YJR044C	REE1	P40893	198 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	YCH1	P42937	148 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	OTU1	P43558	301 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	AIM23	P47015	356 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	ABM1	P47146	123 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	LSG1	P53145	640 aa	Known RBP	1.24	□□□□□ -2.21
VPS55	YJR044C	PEX31	P53203	462 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	SHY1	P53266	389 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	ASI3	P53983	676 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	TDA1	Q03533	586 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	TRM82	Q03774	444 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	TSA2	Q04120	196 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	YMR027W	Q04371	470 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	KRE28	Q04431	385 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	LIP2	Q06005	328 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	MRX9	Q07349	420 aa	Known RBP	1.24	□□□□□ -2.21
VPS55	YJR044C	YDL114W	Q07530	308 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	SDO1	Q07953	250 aa	Known RBP	1.24	□□□□□ -2.21
VPS55	YJR044C	RDL2	Q08742	149 aa	Known RBP	1.24	□□□□□ -2.21
VPS55	YJR044C	RRS1	Q08746	203 aa	Known RBP	1.24	□□□□□ -2.21
VPS55	YJR044C	GET4	Q12125	312 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	MSH5	Q12175	901 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	JID1	Q12350	301 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	YDL199C	Q12407	687 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	ATG31	Q12421	196 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	LAG2	Q92325	660 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	DRS2	P39524	1355 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	YMR316C-A	I2HB70	103 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	RHO1	P06780	209 aa	Known RBP	1.23	□□□□□ -2.21
VPS55	YJR044C	ARG80	P07249	177 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	ASP3-2	P0CX77	362 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	ASP3-3	P0CX78	362 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	ASP3-4	P0CX79	362 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	MATALPHA2	P0CY08	210 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	HMLALPHA2	P0CY09	210 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	ASP3-1	P0CZ17	362 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	MSI1	P13712	422 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	TFS1	P14306	219 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	CBF1	P17106	351 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	ZRC1	P20107	442 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	MRPL25	P23369	157 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	PBN1	P25580	416 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	ARO2	P28777	376 aa	Known RBP	1.23	□□□□□ -2.21
VPS55	YJR044C	FUN26	P31381	517 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	TPS2	P31688	896 aa	Known RBP	1.23	□□□□□ -2.21
VPS55	YJR044C	VMA6	P32366	345 aa	Known RBP	1.23	□□□□□ -2.21
VPS55	YJR044C	MGM101	P32787	269 aa	Known RBP	1.23	□□□□□ -2.21
VPS55	YJR044C	SSO1	P32867	290 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	SGE1	P33335	543 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	ANR2	P36090	516 aa	Predicted RBP	1.23	□□□□□ -2.21
VPS55	YJR044C	UTH1	P36135	365 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	AIM29	P36154	155 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	MRPL10	P36520	322 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	SOL2	P37262	315 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	MIC12	P38341	106 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	CUE1	P38428	203 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	LSM12	P38828	187 aa	Known RBP	1.23	□□□□□ -2.21
VPS55	YJR044C	YRB2	P40517	327 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	EGT2	P42835	1041 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	STB1	P42845	420 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	CTK3	P46963	296 aa	Predicted RBP	1.23	□□□□□ -2.21
VPS55	YJR044C	PMT4	P46971	762 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	ASG7	P46993	209 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	VEL1	P53058	206 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	USE1	P53146	245 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	LIF1	P53150	421 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	HOP2	P53187	214 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	ZRG17	P53735	605 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	NOP13	P53883	403 aa	Known RBP RIP-Chip data	1.23	□□□□□ -2.21	not detected
VPS55	YJR044C	IGO1	P53897	168 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	RNH201	P53942	307 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	RHO3	Q00245	231 aa	Known RBP	1.23	□□□□□ -2.21
VPS55	YJR044C	EBS1	Q03466	884 aa	Known RBP	1.23	□□□□□ -2.21
VPS55	YJR044C	ENT5	Q03769	411 aa	Known RBP	1.23	□□□□□ -2.21
VPS55	YJR044C	GMC1	Q04399	608 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	DPP1	Q05521	289 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	PEX10	Q05568	337 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	YLR283W	Q05867	314 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	SFH1	Q06168	426 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	HEM25	Q07534	307 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	YLR012C	Q07927	99 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	IRC25	Q07951	179 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	SRO7	Q12038	1033 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	VIK1	Q12045	647 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	YPL245W	Q12179	454 aa	Known RBP	1.23	□□□□□ -2.21
VPS55	YJR044C	FRE8	Q12209	686 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	SNF8	Q12483	233 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	NAG1	Q8TGN9	163 aa		1.23	□□□□□ -2.21
VPS55	YJR044C	STH1	P32597	1359 aa		1.22	□□□□□ -2.21
VPS55	YJR044C	RAD9	P14737	1309 aa		1.22	□□□□□ -2.21
VPS55	YJR044C	THP2	O13539	261 aa	Known RBP	1.22	□□□□□ -2.21
VPS55	YJR044C	RPL28	P02406	149 aa	Known RBP	1.22	□□□□□ -2.21

Retrieved 100 of 5,963 RNA–protein pairs in 23.8 ms