RNA–Protein interactions for RNA: YDL108W

KIN28, Transcript of Serine/threonine protein kinase, subunit of transcription factor TFIIH, yeast

Gene KIN28, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
KIN28	YDL108W	UBP8	P50102	471 aa		4.23	□□□□□ -1.73
KIN28	YDL108W	STP1	Q00947	519 aa		4.23	□□□□□ -1.73
KIN28	YDL108W	YDR209C	Q03480	137 aa		4.23	□□□□□ -1.73
KIN28	YDL108W	OST6	Q03723	332 aa		4.23	□□□□□ -1.73
KIN28	YDL108W	CSM3	Q04659	317 aa		4.23	□□□□□ -1.73
KIN28	YDL108W	RPL28	P02406	149 aa	Known RBP	4.22	□□□□□ -1.73
KIN28	YDL108W	SCEI	P03882	235 aa		4.22	□□□□□ -1.73
KIN28	YDL108W	IDP1	P21954	428 aa	Known RBP	4.22	□□□□□ -1.73
KIN28	YDL108W	POP5	P28005	173 aa		4.22	□□□□□ -1.73
KIN28	YDL108W	MDH3	P32419	343 aa	Known RBP RIP-Chip data	4.22	□□□□□ -1.73	not detected
KIN28	YDL108W	YBL010C	P32788	280 aa		4.22	□□□□□ -1.73
KIN28	YDL108W	YCR087C-A	P37263	153 aa		4.22	□□□□□ -1.73
KIN28	YDL108W	SCO2	P38072	301 aa		4.22	□□□□□ -1.73
KIN28	YDL108W	QDR3	P38227	689 aa		4.22	□□□□□ -1.73
KIN28	YDL108W	TDA11	P38854	504 aa		4.22	□□□□□ -1.73
KIN28	YDL108W	RMD6	P39975	231 aa		4.22	□□□□□ -1.73
KIN28	YDL108W	FCY21	P40039	528 aa		4.22	□□□□□ -1.73
KIN28	YDL108W	RGI1	P40043	161 aa	Predicted RBP	4.22	□□□□□ -1.73
KIN28	YDL108W	LYS12	P40495	371 aa	Known RBP	4.22	□□□□□ -1.73
KIN28	YDL108W	POP1	P41812	875 aa		4.22	□□□□□ -1.73
KIN28	YDL108W	IDP2	P41939	412 aa		4.22	□□□□□ -1.73
KIN28	YDL108W	SNG1	P46950	547 aa		4.22	□□□□□ -1.73
KIN28	YDL108W	YJL016W	P47072	561 aa		4.22	□□□□□ -1.73
KIN28	YDL108W	DYN2	Q02647	92 aa		4.22	□□□□□ -1.73
KIN28	YDL108W	GIP3	Q03016	1276 aa		4.22	□□□□□ -1.73
KIN28	YDL108W	SWF1	Q04629	336 aa		4.22	□□□□□ -1.73
KIN28	YDL108W	HCR1	Q05775	265 aa	Known RBP	4.22	□□□□□ -1.73
KIN28	YDL108W	MDM30	Q05930	598 aa		4.22	□□□□□ -1.73
KIN28	YDL108W	POS5	Q06892	414 aa		4.22	□□□□□ -1.73
KIN28	YDL108W	RRP40	Q08285	240 aa	Known RBP	4.22	□□□□□ -1.73
KIN28	YDL108W	YPQ1	Q12010	308 aa		4.22	□□□□□ -1.73
KIN28	YDL108W	JLP1	Q12358	412 aa		4.22	□□□□□ -1.73
KIN28	YDL108W	YKL068W-A	Q3E826	78 aa		4.22	□□□□□ -1.73
KIN28	YDL108W	NUP157	P40064	1391 aa	Known RBP	4.22	□□□□□ -1.73
KIN28	YDL108W	YER145C-A	A0A023PYF4	145 aa		4.21	□□□□□ -1.74
KIN28	YDL108W	CDC28	P00546	298 aa	Known RBP	4.21	□□□□□ -1.74
KIN28	YDL108W	CUP2	P15315	225 aa		4.21	□□□□□ -1.74
KIN28	YDL108W	CPT1	P17898	393 aa		4.21	□□□□□ -1.74
KIN28	YDL108W	MSK1	P32048	576 aa		4.21	□□□□□ -1.74
KIN28	YDL108W	TIP20	P33891	701 aa		4.21	□□□□□ -1.74
KIN28	YDL108W	RRN10	P38204	145 aa		4.21	□□□□□ -1.74
KIN28	YDL108W	YHR122W	P38829	231 aa		4.21	□□□□□ -1.74
KIN28	YDL108W	ATG7	P38862	630 aa		4.21	□□□□□ -1.74
KIN28	YDL108W	YHR177W	P38867	453 aa		4.21	□□□□□ -1.74
KIN28	YDL108W	FLO5	P38894	1075 aa		4.21	□□□□□ -1.74
KIN28	YDL108W	RRG9	P40156	214 aa		4.21	□□□□□ -1.74
KIN28	YDL108W	CFD1	P40558	293 aa		4.21	□□□□□ -1.74
KIN28	YDL108W	PAC11	P40960	533 aa		4.21	□□□□□ -1.74
KIN28	YDL108W	GUF1	P46943	645 aa		4.21	□□□□□ -1.74
KIN28	YDL108W	ADO1	P47143	340 aa	Known RBP	4.21	□□□□□ -1.74
KIN28	YDL108W	SEH1	P53011	349 aa	Known RBP	4.21	□□□□□ -1.74
KIN28	YDL108W	VEL1	P53058	206 aa		4.21	□□□□□ -1.74
KIN28	YDL108W	NIF3	P53081	288 aa		4.21	□□□□□ -1.74
KIN28	YDL108W	TMA20	P89886	181 aa	Predicted RBP	4.21	□□□□□ -1.74
KIN28	YDL108W	RHO3	Q00245	231 aa	Known RBP	4.21	□□□□□ -1.74
KIN28	YDL108W	CWC27	Q02770	301 aa		4.21	□□□□□ -1.74
KIN28	YDL108W	ARL3	Q02804	198 aa		4.21	□□□□□ -1.74
KIN28	YDL108W	AIM34	Q03673	198 aa		4.21	□□□□□ -1.74
KIN28	YDL108W	YMR160W	Q03823	816 aa		4.21	□□□□□ -1.74
KIN28	YDL108W	BER1	Q06688	274 aa	Known RBP	4.21	□□□□□ -1.74
KIN28	YDL108W	YOR387C	Q08910	206 aa		4.21	□□□□□ -1.74
KIN28	YDL108W	FCY22	Q12119	530 aa		4.21	□□□□□ -1.74
KIN28	YDL108W	NSL1	Q12143	216 aa		4.21	□□□□□ -1.74
KIN28	YDL108W	YOR114W	Q12219	294 aa		4.21	□□□□□ -1.74
KIN28	YDL108W	YOR1	P53049	1477 aa		4.21	□□□□□ -1.74
KIN28	YDL108W	RPL25	P04456	142 aa	Known RBP	4.2	□□□□□ -1.74
KIN28	YDL108W	DST1	P07273	309 aa		4.2	□□□□□ -1.74
KIN28	YDL108W	CHO1	P08456	276 aa		4.2	□□□□□ -1.74
KIN28	YDL108W	GCY1	P14065	312 aa	Known RBP RIP-Chip data	4.2	□□□□□ -1.74	not detected
KIN28	YDL108W	GAC1	P28006	793 aa		4.2	□□□□□ -1.74
KIN28	YDL108W	VMA5	P31412	392 aa	Known RBP	4.2	□□□□□ -1.74
KIN28	YDL108W	SAC1	P32368	623 aa	Known RBP	4.2	□□□□□ -1.74
KIN28	YDL108W	DIA4	P38705	446 aa	Predicted RBP	4.2	□□□□□ -1.74
KIN28	YDL108W	BMT5	P40493	336 aa		4.2	□□□□□ -1.74
KIN28	YDL108W	SYG1	P40528	902 aa		4.2	□□□□□ -1.74
KIN28	YDL108W	YFR057W	P43625	151 aa		4.2	□□□□□ -1.74
KIN28	YDL108W	MOG1	P47123	218 aa		4.2	□□□□□ -1.74
KIN28	YDL108W	AIM24	P47127	394 aa		4.2	□□□□□ -1.74
KIN28	YDL108W	VPS25	P47142	202 aa		4.2	□□□□□ -1.74
KIN28	YDL108W	YJR141W	P47172	347 aa	Predicted RBP	4.2	□□□□□ -1.74
KIN28	YDL108W	GPI1	P53306	609 aa		4.2	□□□□□ -1.74
KIN28	YDL108W	YNR066C	P53752	436 aa		4.2	□□□□□ -1.74
KIN28	YDL108W	NEJ1	Q06148	342 aa		4.2	□□□□□ -1.74
KIN28	YDL108W	RUP1	Q12242	671 aa		4.2	□□□□□ -1.74
KIN28	YDL108W	IES3	Q12345	250 aa		4.2	□□□□□ -1.74
KIN28	YDL108W	WIP1	Q2V2P8	89 aa		4.2	□□□□□ -1.74
KIN28	YDL108W	SLO1	Q3E784	85 aa		4.2	□□□□□ -1.74
KIN28	YDL108W	YCL001W-B	Q96VH2	84 aa		4.2	□□□□□ -1.74
KIN28	YDL108W	FSH3	Q99369	266 aa		4.2	□□□□□ -1.74
KIN28	YDL108W	URA6	P15700	204 aa		4.19	□□□□□ -1.74
KIN28	YDL108W	RPO26	P20435	155 aa		4.19	□□□□□ -1.74
KIN28	YDL108W	SEC22	P22214	214 aa		4.19	□□□□□ -1.74
KIN28	YDL108W	TKL1	P23254	680 aa	Known RBP	4.19	□□□□□ -1.74
KIN28	YDL108W	EHD3	P28817	500 aa		4.19	□□□□□ -1.74
KIN28	YDL108W	RGT1	P32862	1170 aa		4.19	□□□□□ -1.74
KIN28	YDL108W	SGE1	P33335	543 aa		4.19	□□□□□ -1.74
KIN28	YDL108W	SWD2	P36104	329 aa	Predicted RBP	4.19	□□□□□ -1.74
KIN28	YDL108W	SRL3	P36167	246 aa		4.19	□□□□□ -1.74
KIN28	YDL108W	RRP4	P38792	359 aa	Known RBP	4.19	□□□□□ -1.74
KIN28	YDL108W	DHH1	P39517	506 aa	Known RBP	4.19	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 39.2 ms