RNA–Protein interactions for RNA: YMR171C

EAR1, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeast

Gene EAR1, Length 1,653 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytoplasm .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
EAR1	YMR171C	MBA1	P38300	278 aa		4.27	□□□□□ -1.73
EAR1	YMR171C	PHM8	P40025	321 aa		4.27	□□□□□ -1.73
EAR1	YMR171C	RRG9	P40156	214 aa		4.27	□□□□□ -1.73
EAR1	YMR171C	CAK1	P43568	368 aa	Predicted RBP	4.27	□□□□□ -1.73
EAR1	YMR171C	HMS2	P47175	358 aa		4.27	□□□□□ -1.73
EAR1	YMR171C	BSC5	P53755	489 aa		4.27	□□□□□ -1.73
EAR1	YMR171C	IPI3	P53877	555 aa		4.27	□□□□□ -1.73
EAR1	YMR171C	IGO1	P53897	168 aa		4.27	□□□□□ -1.73
EAR1	YMR171C	PFA5	Q03289	374 aa		4.27	□□□□□ -1.73
EAR1	YMR171C	RTN1	Q04947	295 aa	Known RBP	4.27	□□□□□ -1.73
EAR1	YMR171C	BSP1	Q06604	576 aa		4.27	□□□□□ -1.73
EAR1	YMR171C	YPL199C	Q08954	240 aa		4.27	□□□□□ -1.73
EAR1	YMR171C	YPR011C	Q12251	326 aa		4.27	□□□□□ -1.73
EAR1	YMR171C	NDJ1	Q12366	352 aa		4.27	□□□□□ -1.73
EAR1	YMR171C	RTR2	Q12378	196 aa		4.27	□□□□□ -1.73
EAR1	YMR171C	YPR1	Q12458	312 aa		4.27	□□□□□ -1.73
EAR1	YMR171C	YLR111W	Q12528	110 aa		4.27	□□□□□ -1.73
EAR1	YMR171C	STT4	P37297	1900 aa		4.27	□□□□□ -1.73
EAR1	YMR171C	HOM2	P13663	365 aa	Known RBP	4.26	□□□□□ -1.73
EAR1	YMR171C	TFS1	P14306	219 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	MNE1	P24720	663 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	PGS1	P25578	521 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	HSP30	P25619	332 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	MDM31	P38880	579 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	VMA7	P39111	118 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	PRE6	P40303	254 aa	Known RBP	4.26	□□□□□ -1.73
EAR1	YMR171C	GAT1	P43574	510 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	JHD2	P47156	728 aa	Predicted RBP	4.26	□□□□□ -1.73
EAR1	YMR171C	MDM34	P53083	459 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	SNZ1	Q03148	297 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	CCE1	Q03702	353 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	VHS1	Q03785	461 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	YMR034C	Q05131	434 aa	Predicted RBP	4.26	□□□□□ -1.73
EAR1	YMR171C	SPO77	Q06134	477 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	YLR446W	Q06204	433 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	PEX27	Q08580	376 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	ATG29	Q12092	213 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	NMD4	Q12129	218 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	YDR061W	Q12298	539 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	MRX4	Q12467	430 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	MHT1	Q12525	324 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	SLH1	P53327	1967 aa	Known RBP	4.26	□□□□□ -1.73
EAR1	YMR171C	GRX2	P17695	143 aa	Known RBP	4.26	□□□□□ -1.73
EAR1	YMR171C	CAT2	P32796	670 aa	Known RBP	4.26	□□□□□ -1.73
EAR1	YMR171C	SPO23	P33757	523 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	ALY1	P36117	915 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	YBR063C	P38083	404 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	MUM2	P38236	366 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	NVJ1	P38881	321 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	MLH1	P38920	769 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	RPH1	P39956	796 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	GDI1	P39958	451 aa	Known RBP	4.26	□□□□□ -1.73
EAR1	YMR171C	RTT105	P40063	208 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	YKE4	P40544	346 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	YGR201C	P42936	225 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	MNN5	P46982	586 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	MDV1	P47025	714 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	SNX4	P47057	423 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	YJR030C	P47101	745 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	YJR149W	P47177	404 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	MRH4	P53166	561 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	MKC7	P53379	596 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	ATP23	P53722	227 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	YPL071C	Q02864	156 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	GIP3	Q03016	1276 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	YLR036C	Q07986	203 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	RAX1	Q08760	435 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	SIA1	Q12212	622 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	YLR046C	Q12253	270 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	PST1	Q12355	444 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	SKM1	Q12469	655 aa		4.26	□□□□□ -1.73
EAR1	YMR171C	MSF1	P08425	469 aa		4.25	□□□□□ -1.73
EAR1	YMR171C	MTF1	P14908	341 aa	Known RBP	4.25	□□□□□ -1.73
EAR1	YMR171C	MER1	P16523	270 aa		4.25	□□□□□ -1.73
EAR1	YMR171C	AAC3	P18238	307 aa		4.25	□□□□□ -1.73
EAR1	YMR171C	ATG22	P25568	528 aa		4.25	□□□□□ -1.73
EAR1	YMR171C	GEX1	P25596	615 aa		4.25	□□□□□ -1.73
EAR1	YMR171C	POT1	P27796	417 aa	Known RBP RIP-Chip data	4.25	□□□□□ -1.73	not detected
EAR1	YMR171C	SPS19	P32573	292 aa	Known RBP	4.25	□□□□□ -1.73
EAR1	YMR171C	PPQ1	P32945	549 aa		4.25	□□□□□ -1.73
EAR1	YMR171C	PMT1	P33775	817 aa		4.25	□□□□□ -1.73
EAR1	YMR171C	ZRT3	P34240	503 aa		4.25	□□□□□ -1.73
EAR1	YMR171C	RSM22	P36056	628 aa		4.25	□□□□□ -1.73
EAR1	YMR171C	YBR242W	P38331	238 aa		4.25	□□□□□ -1.73
EAR1	YMR171C	DBP8	P38719	431 aa		4.25	□□□□□ -1.73
EAR1	YMR171C	YHR035W	P38769	630 aa		4.25	□□□□□ -1.73
EAR1	YMR171C	SBE22	P38814	852 aa		4.25	□□□□□ -1.73
EAR1	YMR171C	NOP16	P40007	231 aa	Known RBP	4.25	□□□□□ -1.73
EAR1	YMR171C	SLZ1	P40167	298 aa		4.25	□□□□□ -1.73
EAR1	YMR171C	CIN1	P40987	1014 aa		4.25	□□□□□ -1.73
EAR1	YMR171C	SSU1	P41930	458 aa		4.25	□□□□□ -1.73
EAR1	YMR171C	BPL1	P48445	690 aa	Predicted RBP	4.25	□□□□□ -1.73
EAR1	YMR171C	YGR015C	P53208	328 aa		4.25	□□□□□ -1.73
EAR1	YMR171C	FRE4	P53746	719 aa		4.25	□□□□□ -1.73
EAR1	YMR171C	OAZ1	Q02803	292 aa		4.25	□□□□□ -1.73
EAR1	YMR171C	PIR1	Q03178	341 aa		4.25	□□□□□ -1.73
EAR1	YMR171C	TRM82	Q03774	444 aa		4.25	□□□□□ -1.73
EAR1	YMR171C	YMR087W	Q04299	284 aa		4.25	□□□□□ -1.73
EAR1	YMR171C	RQC1	Q05468	723 aa	Known RBP	4.25	□□□□□ -1.73
EAR1	YMR171C	RGT2	Q12300	763 aa		4.25	□□□□□ -1.73

Retrieved 100 of 5,963 RNA–protein pairs in 80.1 ms