RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W YKL162CP36052 402 aa2.74□□□□□ -1.97
UPF3YGR072W YKL071WP36086 256 aa2.74□□□□□ -1.97
UPF3YGR072W SWD2P36104 329 aaPredicted RBP2.74□□□□□ -1.97
UPF3YGR072W SOL2P37262 315 aa2.74□□□□□ -1.97
UPF3YGR072W RCK2P38623 610 aa2.74□□□□□ -1.97
UPF3YGR072W PET100P38958 111 aa2.74□□□□□ -1.97
UPF3YGR072W UTP18P40362 594 aaPredicted RBP2.74□□□□□ -1.97
UPF3YGR072W OKP1P53298 406 aa2.74□□□□□ -1.97
UPF3YGR072W YNL050CP53952 270 aa2.74□□□□□ -1.97
UPF3YGR072W LIP2Q06005 328 aa2.74□□□□□ -1.97
UPF3YGR072W PBP4Q07362 185 aaKnown RBP2.74□□□□□ -1.97
UPF3YGR072W MFG1Q07684 458 aa2.74□□□□□ -1.97
UPF3YGR072W ATP16Q12165 160 aa2.74□□□□□ -1.97
UPF3YGR072W FRE8Q12209 686 aa2.74□□□□□ -1.97
UPF3YGR072W IZH4Q99393 312 aa2.74□□□□□ -1.97
UPF3YGR072W RPL24AP04449 155 aaKnown RBP2.73□□□□□ -1.97
UPF3YGR072W ZRC1P20107 442 aa2.73□□□□□ -1.97
UPF3YGR072W MRPL37P36532 105 aa2.73□□□□□ -1.97
UPF3YGR072W BMT2P38278 337 aa2.73□□□□□ -1.97
UPF3YGR072W OM14P38325 134 aa2.73□□□□□ -1.97
UPF3YGR072W MIG3P39943 394 aa2.73□□□□□ -1.97
UPF3YGR072W GAB1P41733 394 aa2.73□□□□□ -1.97
UPF3YGR072W GCD14P46959 383 aaPredicted RBP2.73□□□□□ -1.97
UPF3YGR072W YGR266WP53326 701 aa2.73□□□□□ -1.97
UPF3YGR072W PRP38Q00723 242 aaPredicted RBP2.73□□□□□ -1.97
UPF3YGR072W YHC1Q05900 231 aaKnown RBP2.73□□□□□ -1.97
UPF3YGR072W YPQ1Q12010 308 aa2.73□□□□□ -1.97
UPF3YGR072W LDB17Q12342 491 aa2.73□□□□□ -1.97
UPF3YGR072W HRT3Q12347 344 aa2.73□□□□□ -1.97
UPF3YGR072W ERP3Q12403 225 aa2.73□□□□□ -1.97
UPF3YGR072W UNG1P12887 359 aa2.72□□□□□ -1.97
UPF3YGR072W GPI12P23797 304 aa2.72□□□□□ -1.97
UPF3YGR072W NUP2P32499 720 aa2.72□□□□□ -1.97
UPF3YGR072W HIS2P38635 335 aa2.72□□□□□ -1.97
UPF3YGR072W SMF2P38778 549 aa2.72□□□□□ -1.97
UPF3YGR072W DSE1P40077 573 aa2.72□□□□□ -1.97
UPF3YGR072W YFL040WP43562 540 aa2.72□□□□□ -1.97
UPF3YGR072W MRX5P47007 382 aa2.72□□□□□ -1.97
UPF3YGR072W SEH1P53011 349 aaKnown RBP2.72□□□□□ -1.97
UPF3YGR072W SDT1P53078 280 aa2.72□□□□□ -1.97
UPF3YGR072W YGL185CP53100 379 aa2.72□□□□□ -1.97
UPF3YGR072W MPP6P53725 186 aaPredicted RBP2.72□□□□□ -1.97
UPF3YGR072W SUR7P54003 302 aa2.72□□□□□ -1.97
UPF3YGR072W YPL080CQ02826 108 aa2.72□□□□□ -1.97
UPF3YGR072W GPN3Q06543 272 aa2.72□□□□□ -1.97
UPF3YGR072W BER1Q06688 274 aaKnown RBP2.72□□□□□ -1.97
UPF3YGR072W YLR012CQ07927 99 aa2.72□□□□□ -1.97
UPF3YGR072W RDL2Q08742 149 aaKnown RBP2.72□□□□□ -1.97
UPF3YGR072W SLM3Q12093 417 aa2.72□□□□□ -1.97
UPF3YGR072W UTP23Q12339 254 aaKnown RBP2.72□□□□□ -1.97
UPF3YGR072W RPN6Q12377 434 aa2.72□□□□□ -1.97
UPF3YGR072W PRM4Q12498 284 aa2.72□□□□□ -1.97
UPF3YGR072W INO80P53115 1489 aa2.71□□□□□ -1.97
UPF3YGR072W REP1P03871 373 aa2.71□□□□□ -1.98
UPF3YGR072W ERD1P16151 362 aa2.71□□□□□ -1.98
UPF3YGR072W YEL045CP32616 141 aa2.71□□□□□ -1.98
UPF3YGR072W YUH1P35127 236 aa2.71□□□□□ -1.98
UPF3YGR072W SWD3P38123 315 aa2.71□□□□□ -1.98
UPF3YGR072W YBR241CP38142 488 aa2.71□□□□□ -1.98
UPF3YGR072W WSC4P38739 605 aa2.71□□□□□ -1.98
UPF3YGR072W CTM1P38818 585 aa2.71□□□□□ -1.98
UPF3YGR072W PFS1P38872 237 aa2.71□□□□□ -1.98
UPF3YGR072W BAT1P38891 393 aaKnown RBP2.71□□□□□ -1.98
UPF3YGR072W SMC2P38989 1170 aaKnown RBP2.71□□□□□ -1.98
UPF3YGR072W TIM17P39515 158 aa2.71□□□□□ -1.98
UPF3YGR072W PEX22P39718 180 aa2.71□□□□□ -1.98
UPF3YGR072W SWC4P53201 476 aa2.71□□□□□ -1.98
UPF3YGR072W BIO4P53630 237 aa2.71□□□□□ -1.98
UPF3YGR072W RNH201P53942 307 aa2.71□□□□□ -1.98
UPF3YGR072W VAC7P53950 1165 aa2.71□□□□□ -1.98
UPF3YGR072W YPL077CQ02831 240 aa2.71□□□□□ -1.98
UPF3YGR072W ENT5Q03769 411 aaKnown RBP2.71□□□□□ -1.98
UPF3YGR072W ATC1Q04005 294 aa2.71□□□□□ -1.98
UPF3YGR072W SNX41Q04053 625 aa2.71□□□□□ -1.98
UPF3YGR072W CSI1Q04368 295 aa2.71□□□□□ -1.98
UPF3YGR072W KAP95Q06142 861 aaKnown RBP2.71□□□□□ -1.98
UPF3YGR072W YLR177WQ06251 628 aa2.71□□□□□ -1.98
UPF3YGR072W MRX9Q07349 420 aaKnown RBP2.71□□□□□ -1.98
UPF3YGR072W FMP16Q12497 93 aa2.71□□□□□ -1.98
UPF3YGR072W PRB1P09232 635 aa2.7□□□□□ -1.98
UPF3YGR072W ASP3-2P0CX77 362 aa2.7□□□□□ -1.98
UPF3YGR072W ASP3-3P0CX78 362 aa2.7□□□□□ -1.98
UPF3YGR072W ASP3-4P0CX79 362 aa2.7□□□□□ -1.98
UPF3YGR072W ASP3-1P0CZ17 362 aa2.7□□□□□ -1.98
UPF3YGR072W ISY1P21374 235 aaPredicted RBP2.7□□□□□ -1.98
UPF3YGR072W PMT2P31382 759 aa2.7□□□□□ -1.98
UPF3YGR072W GPI18P38211 433 aa2.7□□□□□ -1.98
UPF3YGR072W PRE5P40302 234 aaKnown RBP2.7□□□□□ -1.98
UPF3YGR072W IGD1P43598 195 aa2.7□□□□□ -1.98
UPF3YGR072W PMT4P46971 762 aa2.7□□□□□ -1.98
UPF3YGR072W SED5Q01590 340 aa2.7□□□□□ -1.98
UPF3YGR072W RRN5Q02983 363 aa2.7□□□□□ -1.98
UPF3YGR072W RPN8Q08723 338 aaKnown RBP2.7□□□□□ -1.98
UPF3YGR072W TAF10Q12030 206 aa2.7□□□□□ -1.98
UPF3YGR072W RRP42Q12277 265 aaPredicted RBP2.7□□□□□ -1.98
UPF3YGR072W MCT1Q12283 360 aa2.7□□□□□ -1.98
UPF3YGR072W RPL21BQ12672 160 aaKnown RBP2.7□□□□□ -1.98
UPF3YGR072W FOL3Q12676 427 aaPredicted RBP2.7□□□□□ -1.98
UPF3YGR072W MHP1P43638 1398 aa2.7□□□□□ -1.98
UPF3YGR072W CMK2P22517 447 aa2.69□□□□□ -1.98
Retrieved 100 of 5,963 RNA–protein pairs in 34.6 ms