RNA–Protein interactions for RNA: YOL038W

PRE6, Transcript of Alpha 4 subunit of the 20S proteasome, yeastyeast

Gene PRE6, Length 765 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE6YOL038W NST1P53935 1240 aa14.21□□□□□ -0.13
PRE6YOL038W TOS1P38288 455 aa14.2□□□□□ -0.14
PRE6YOL038W TUM1Q08686 304 aaKnown RBP14.19□□□□□ -0.14
PRE6YOL038W NUP145P49687 1317 aa14.18□□□□□ -0.14
PRE6YOL038W RAD4P14736 754 aa14.18□□□□□ -0.14
PRE6YOL038W BUG1Q12191 341 aa14.18□□□□□ -0.14
PRE6YOL038W UTP10P42945 1769 aaKnown RBP14.18□□□□□ -0.14
PRE6YOL038W GRX1P25373 110 aaKnown RBP14.15□□□□□ -0.14
PRE6YOL038W DSD1P53095 428 aa14.15□□□□□ -0.14
PRE6YOL038W KAR2P16474 682 aaKnown RBP14.14□□□□□ -0.15
PRE6YOL038W TRK1P12685 1235 aa14.13□□□□□ -0.15
PRE6YOL038W RIX7Q07844 837 aaKnown RBP14.13□□□□□ -0.15
PRE6YOL038W HSP104P31539 908 aaKnown RBP14.11□□□□□ -0.15
PRE6YOL038W YBP2P53169 641 aa14.11□□□□□ -0.15
PRE6YOL038W UTP22P53254 1237 aaPredicted RBP14.11□□□□□ -0.15
PRE6YOL038W POL5P39985 1022 aaKnown RBP14.07□□□□□ -0.16
PRE6YOL038W AKL1P38080 1108 aaKnown RBP14.06□□□□□ -0.16
PRE6YOL038W MSN5P52918 1224 aa14.06□□□□□ -0.16
PRE6YOL038W HPC2Q01448 625 aa14.06□□□□□ -0.16
PRE6YOL038W KIN4Q01919 800 aa14.05□□□□□ -0.16
PRE6YOL038W SAP155P43612 1002 aa14.04□□□□□ -0.16
PRE6YOL038W NYV1Q12255 253 aa14.04□□□□□ -0.16
PRE6YOL038W PMD1P32634 1753 aa14.04□□□□□ -0.16
PRE6YOL038W PAP2P53632 584 aaKnown RBP14.03□□□□□ -0.16
PRE6YOL038W RRP46P53256 223 aaPredicted RBP14.01□□□□□ -0.17
PRE6YOL038W CTF4Q01454 927 aa14.01□□□□□ -0.17
PRE6YOL038W ERT1P38140 529 aa14□□□□□ -0.17
PRE6YOL038W CTI6Q08923 506 aa14□□□□□ -0.17
PRE6YOL038W CTT1P06115 562 aa13.98□□□□□ -0.17
PRE6YOL038W NTH2P35172 780 aa13.97□□□□□ -0.17
PRE6YOL038W BUD27P43573 796 aaKnown RBP RIP-Chip data13.97□□□□□ -0.17not detected
PRE6YOL038W ALE1Q08548 619 aa13.97□□□□□ -0.17
PRE6YOL038W YER156CP40093 338 aaKnown RBP13.96□□□□□ -0.17
PRE6YOL038W TEA1P47988 759 aa13.96□□□□□ -0.17
PRE6YOL038W CWH41P53008 833 aa13.96□□□□□ -0.17
PRE6YOL038W RMT2Q03305 412 aa13.96□□□□□ -0.17
PRE6YOL038W AOS1Q06624 347 aa13.96□□□□□ -0.17
PRE6YOL038W NOP53Q12080 455 aaKnown RBP13.93□□□□□ -0.18
PRE6YOL038W YKL222CP35995 705 aa13.92□□□□□ -0.18
PRE6YOL038W FAS2P19097 1887 aaKnown RBP13.91□□□□□ -0.18
PRE6YOL038W KCC4P25389 1037 aa13.91□□□□□ -0.18
PRE6YOL038W SQS1P53866 767 aaKnown RBP13.91□□□□□ -0.18
PRE6YOL038W PSD2P53037 1138 aaKnown RBP13.9□□□□□ -0.18
PRE6YOL038W SMY1P32364 656 aaKnown RBP13.89□□□□□ -0.19
PRE6YOL038W TOM1Q03280 3268 aa13.88□□□□□ -0.19
PRE6YOL038W RRT14P40470 206 aa13.87□□□□□ -0.19
PRE6YOL038W DCD1P06773 312 aa13.86□□□□□ -0.19
PRE6YOL038W SER1P33330 395 aaKnown RBP13.86□□□□□ -0.19
PRE6YOL038W PHM7Q12252 991 aa13.86□□□□□ -0.19
PRE6YOL038W YGL082WP53155 381 aa13.85□□□□□ -0.19
PRE6YOL038W LPD1P09624 499 aaKnown RBP13.84□□□□□ -0.19
PRE6YOL038W ARG8P18544 423 aa13.84□□□□□ -0.19
PRE6YOL038W PFF1P38244 976 aa13.84□□□□□ -0.19
PRE6YOL038W RRD1P40454 393 aaKnown RBP13.84□□□□□ -0.19
PRE6YOL038W CAF20P12962 161 aaKnown RBP13.82□□□□□ -0.2
PRE6YOL038W YFR016CP43597 1233 aaKnown RBP13.82□□□□□ -0.2
PRE6YOL038W SSA4P22202 642 aaKnown RBP13.81□□□□□ -0.2
PRE6YOL038W MDG1P53885 366 aa13.8□□□□□ -0.2
PRE6YOL038W HKR1P41809 1802 aa13.78□□□□□ -0.2
PRE6YOL038W UGA3P26370 528 aa13.78□□□□□ -0.2
PRE6YOL038W APL2P36000 726 aaPredicted RBP13.78□□□□□ -0.2
PRE6YOL038W YNL050CP53952 270 aa13.78□□□□□ -0.2
PRE6YOL038W SSP2Q08646 371 aa13.78□□□□□ -0.2
PRE6YOL038W YPR204WQ08995 1032 aa13.77□□□□□ -0.21
PRE6YOL038W TOP1P04786 769 aa13.76□□□□□ -0.21
PRE6YOL038W ICL1P28240 557 aaPredicted RBP13.76□□□□□ -0.21
PRE6YOL038W RTR1P40084 226 aaPredicted RBP13.76□□□□□ -0.21
PRE6YOL038W ZDS2P54786 942 aa13.76□□□□□ -0.21
PRE6YOL038W RAT1Q02792 1006 aaKnown RBP13.76□□□□□ -0.21
PRE6YOL038W ERO1Q03103 563 aa13.76□□□□□ -0.21
PRE6YOL038W PUS5Q06244 254 aa13.76□□□□□ -0.21
PRE6YOL038W BDF2Q07442 638 aa13.76□□□□□ -0.21
PRE6YOL038W PRD1P25375 712 aa13.75□□□□□ -0.21
PRE6YOL038W FIG2P25653 1609 aa13.72□□□□□ -0.21
PRE6YOL038W FPK1P53739 893 aa13.72□□□□□ -0.21
PRE6YOL038W THI22Q06490 572 aa13.72□□□□□ -0.21
PRE6YOL038W LYS2P07702 1392 aa13.71□□□□□ -0.21
PRE6YOL038W COQ4O13525 335 aa13.71□□□□□ -0.21
PRE6YOL038W UBP16Q02863 499 aa13.71□□□□□ -0.21
PRE6YOL038W NSE3Q05541 303 aa13.71□□□□□ -0.21
PRE6YOL038W IRC3Q06683 689 aa13.71□□□□□ -0.21
PRE6YOL038W SLI15P38283 698 aa13.69□□□□□ -0.22
PRE6YOL038W ATG20Q07528 640 aa13.69□□□□□ -0.22
PRE6YOL038W SIT4P20604 311 aa13.68□□□□□ -0.22
PRE6YOL038W YBR287WP38355 427 aa13.68□□□□□ -0.22
PRE6YOL038W PEX21P50091 288 aa13.68□□□□□ -0.22
PRE6YOL038W BMS1Q08965 1183 aaKnown RBP13.68□□□□□ -0.22
PRE6YOL038W VPS64Q03944 604 aa13.67□□□□□ -0.22
PRE6YOL038W RTT109Q07794 436 aa13.67□□□□□ -0.22
PRE6YOL038W ZDS1P50111 915 aaKnown RBP13.66□□□□□ -0.22
PRE6YOL038W THS1P04801 734 aaKnown RBP13.65□□□□□ -0.22
PRE6YOL038W SHC1P39000 512 aa13.65□□□□□ -0.22
PRE6YOL038W MPP10P47083 593 aaKnown RBP13.65□□□□□ -0.22
PRE6YOL038W YLR278CQ05854 1341 aa13.64□□□□□ -0.23
PRE6YOL038W YKU70P32807 602 aa13.64□□□□□ -0.23
PRE6YOL038W DIB1Q06819 143 aaPredicted RBP13.64□□□□□ -0.23
PRE6YOL038W DIP2Q12220 943 aaPredicted RBP13.64□□□□□ -0.23
PRE6YOL038W RET1P22276 1149 aaKnown RBP13.63□□□□□ -0.23
PRE6YOL038W FRD1P32614 470 aaKnown RBP13.63□□□□□ -0.23
PRE6YOL038W SSK22P25390 1331 aaPredicted RBP13.63□□□□□ -0.23
Retrieved 100 of 5,963 RNA–protein pairs in 45.3 ms