RNA–Protein interactions for RNA: YKL213C

DOA1, Transcript of WD repeat protein required for ubiquitin-mediated protein degradation, yeast

Gene DOA1, Length 2,148 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DOA1	YKL213C	YRF1-4	O13559	1382 aa		6.24	□□□□□ -1.41
DOA1	YKL213C	APC1	P53886	1748 aa		6.24	□□□□□ -1.41
DOA1	YKL213C	CTH1	P47976	325 aa		6.23	□□□□□ -1.41
DOA1	YKL213C	RPO41	P13433	1351 aa	Known RBP	6.23	□□□□□ -1.41
DOA1	YKL213C	SNU71	P53207	620 aa	Known RBP	6.22	□□□□□ -1.41
DOA1	YKL213C	RCR1	P38212	213 aa		6.2	□□□□□ -1.42
DOA1	YKL213C	PAP2	P53632	584 aa	Known RBP	6.2	□□□□□ -1.42
DOA1	YKL213C	MEC3	Q02574	474 aa		6.2	□□□□□ -1.42
DOA1	YKL213C	FRK1	Q03002	865 aa	Predicted RBP	6.2	□□□□□ -1.42
DOA1	YKL213C	SIR4	P11978	1358 aa		6.2	□□□□□ -1.42
DOA1	YKL213C	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	6.19	□□□□□ -1.42	not detected
DOA1	YKL213C	SSA1	P10591	642 aa	Known RBP	6.18	□□□□□ -1.42
DOA1	YKL213C	RRP46	P53256	223 aa	Predicted RBP	6.18	□□□□□ -1.42
DOA1	YKL213C	ADE16	P54113	591 aa	Known RBP	6.18	□□□□□ -1.42
DOA1	YKL213C	SNF2	P22082	1703 aa		6.17	□□□□□ -1.42
DOA1	YKL213C	AKL1	P38080	1108 aa	Known RBP	6.16	□□□□□ -1.42
DOA1	YKL213C	DSD1	P53095	428 aa		6.16	□□□□□ -1.42
DOA1	YKL213C	HSP104	P31539	908 aa	Known RBP	6.15	□□□□□ -1.42
DOA1	YKL213C	BDF1	P35817	686 aa		6.15	□□□□□ -1.42
DOA1	YKL213C	RTR1	P40084	226 aa	Predicted RBP	6.15	□□□□□ -1.42
DOA1	YKL213C	ALD3	P54114	506 aa		6.15	□□□□□ -1.42
DOA1	YKL213C	ATG13	Q06628	738 aa		6.15	□□□□□ -1.42
DOA1	YKL213C	MSB4	Q12317	492 aa		6.15	□□□□□ -1.42
DOA1	YKL213C	RPG1	P38249	964 aa	Known RBP	6.14	□□□□□ -1.43
DOA1	YKL213C	CWC22	P53333	577 aa	Known RBP	6.14	□□□□□ -1.43
DOA1	YKL213C	CTF4	Q01454	927 aa		6.13	□□□□□ -1.43
DOA1	YKL213C	INP54	Q08227	384 aa	Known RBP	6.13	□□□□□ -1.43
DOA1	YKL213C	PRD1	P25375	712 aa		6.13	□□□□□ -1.43
DOA1	YKL213C	DEF1	P35732	738 aa	Known RBP	6.13	□□□□□ -1.43
DOA1	YKL213C	YDL144C	Q07589	356 aa		6.13	□□□□□ -1.43
DOA1	YKL213C	RIM15	P43565	1770 aa		6.12	□□□□□ -1.43
DOA1	YKL213C	MPP10	P47083	593 aa	Known RBP	6.12	□□□□□ -1.43
DOA1	YKL213C	OSM1	P21375	501 aa	Known RBP	6.11	□□□□□ -1.43
DOA1	YKL213C	NTH2	P35172	780 aa		6.11	□□□□□ -1.43
DOA1	YKL213C	AOS1	Q06624	347 aa		6.11	□□□□□ -1.43
DOA1	YKL213C	NUP145	P49687	1317 aa		6.11	□□□□□ -1.43
DOA1	YKL213C	GRE2	Q12068	342 aa	Known RBP	6.11	□□□□□ -1.43
DOA1	YKL213C	BUG1	Q12191	341 aa		6.11	□□□□□ -1.43
DOA1	YKL213C	RPP0	P05317	312 aa	Known RBP	6.1	□□□□□ -1.43
DOA1	YKL213C	GRX1	P25373	110 aa	Known RBP	6.1	□□□□□ -1.43
DOA1	YKL213C	RAD4	P14736	754 aa		6.1	□□□□□ -1.43
DOA1	YKL213C	THI22	Q06490	572 aa		6.1	□□□□□ -1.43
DOA1	YKL213C	EAF6	P47128	113 aa		6.09	□□□□□ -1.43
DOA1	YKL213C	YNL050C	P53952	270 aa		6.09	□□□□□ -1.43
DOA1	YKL213C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	6.08	□□□□□ -1.44	not detected
DOA1	YKL213C	KCC4	P25389	1037 aa		6.08	□□□□□ -1.44
DOA1	YKL213C	TOS1	P38288	455 aa		6.08	□□□□□ -1.44
DOA1	YKL213C	VPS27	P40343	622 aa	Known RBP	6.08	□□□□□ -1.44
DOA1	YKL213C	SAP155	P43612	1002 aa		6.08	□□□□□ -1.44
DOA1	YKL213C	YBP2	P53169	641 aa		6.08	□□□□□ -1.44
DOA1	YKL213C	UTP22	P53254	1237 aa	Predicted RBP	6.08	□□□□□ -1.44
DOA1	YKL213C	MDG1	P53885	366 aa		6.07	□□□□□ -1.44
DOA1	YKL213C	HPC2	Q01448	625 aa		6.07	□□□□□ -1.44
DOA1	YKL213C	RTT109	Q07794	436 aa		6.07	□□□□□ -1.44
DOA1	YKL213C	HEF3	P53978	1044 aa	Known RBP	6.07	□□□□□ -1.44
DOA1	YKL213C	PSH1	Q12161	406 aa		6.07	□□□□□ -1.44
DOA1	YKL213C	SUI2	P20459	304 aa	Known RBP	6.06	□□□□□ -1.44
DOA1	YKL213C	UGA3	P26370	528 aa		6.06	□□□□□ -1.44
DOA1	YKL213C	TPD3	P31383	635 aa		6.06	□□□□□ -1.44
DOA1	YKL213C	PRS1	P32895	427 aa	Known RBP	6.06	□□□□□ -1.44
DOA1	YKL213C	ZDS1	P50111	915 aa	Known RBP	6.06	□□□□□ -1.44
DOA1	YKL213C	CDC45	Q08032	650 aa		6.06	□□□□□ -1.44
DOA1	YKL213C	TUM1	Q08686	304 aa	Known RBP	6.06	□□□□□ -1.44
DOA1	YKL213C	MAM1	P40065	302 aa		6.05	□□□□□ -1.44
DOA1	YKL213C	MSN5	P52918	1224 aa		6.05	□□□□□ -1.44
DOA1	YKL213C	NSE3	Q05541	303 aa		6.05	□□□□□ -1.44
DOA1	YKL213C	RLP24	Q07915	199 aa	Known RBP	6.05	□□□□□ -1.44
DOA1	YKL213C	RIX7	Q07844	837 aa	Known RBP	6.04	□□□□□ -1.44
DOA1	YKL213C	ALE1	Q08548	619 aa		6.04	□□□□□ -1.44
DOA1	YKL213C	RRT14	P40470	206 aa		6.04	□□□□□ -1.44
DOA1	YKL213C	GYP7	P48365	746 aa		6.04	□□□□□ -1.44
DOA1	YKL213C	RMT2	Q03305	412 aa		6.04	□□□□□ -1.44
DOA1	YKL213C	LYS2	P07702	1392 aa		6.03	□□□□□ -1.44
DOA1	YKL213C	CTT1	P06115	562 aa		6.03	□□□□□ -1.44
DOA1	YKL213C	BMS1	Q08965	1183 aa	Known RBP	6.03	□□□□□ -1.44
DOA1	YKL213C	RVB2	Q12464	471 aa	Known RBP	6.02	□□□□□ -1.45
DOA1	YKL213C	COQ4	O13525	335 aa		6.02	□□□□□ -1.45
DOA1	YKL213C	YER156C	P40093	338 aa	Known RBP	6.02	□□□□□ -1.45
DOA1	YKL213C	NYV1	Q12255	253 aa		6.02	□□□□□ -1.45
DOA1	YKL213C	YBR287W	P38355	427 aa		6.01	□□□□□ -1.45
DOA1	YKL213C	YPR148C	Q06523	435 aa		6.01	□□□□□ -1.45
DOA1	YKL213C	CTI6	Q08923	506 aa		6.01	□□□□□ -1.45
DOA1	YKL213C	NOP53	Q12080	455 aa	Known RBP	6.01	□□□□□ -1.45
DOA1	YKL213C	YKL222C	P35995	705 aa		6.01	□□□□□ -1.45
DOA1	YKL213C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	6.01	□□□□□ -1.45	not detected
DOA1	YKL213C	CWH41	P53008	833 aa		6.01	□□□□□ -1.45
DOA1	YKL213C	ERT1	P38140	529 aa		6	□□□□□ -1.45
DOA1	YKL213C	KIN4	Q01919	800 aa		6	□□□□□ -1.45
DOA1	YKL213C	SRT1	Q03175	343 aa		6	□□□□□ -1.45
DOA1	YKL213C	TEA1	P47988	759 aa		5.99	□□□□□ -1.45
DOA1	YKL213C	YOL057W	Q08225	711 aa		5.99	□□□□□ -1.45
DOA1	YKL213C	SSP2	Q08646	371 aa		5.99	□□□□□ -1.45
DOA1	YKL213C	SQS1	P53866	767 aa	Known RBP	5.98	□□□□□ -1.45
DOA1	YKL213C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	5.98	□□□□□ -1.45	not detected
DOA1	YKL213C	PHM7	Q12252	991 aa		5.98	□□□□□ -1.45
DOA1	YKL213C	GIN4	Q12263	1142 aa		5.98	□□□□□ -1.45
DOA1	YKL213C	FPR3	P38911	411 aa	Known RBP	5.98	□□□□□ -1.45
DOA1	YKL213C	ZDS2	P54786	942 aa		5.98	□□□□□ -1.45
DOA1	YKL213C	MAK21	Q12176	1025 aa	Known RBP	5.98	□□□□□ -1.45
DOA1	YKL213C	SER1	P33330	395 aa	Known RBP	5.97	□□□□□ -1.45

Retrieved 100 of 5,963 RNA–protein pairs in 22.6 ms