RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C PRE3P38624 215 aa7.76□□□□□ -1.17
DEF1YKL054C PPX1P38698 397 aa7.76□□□□□ -1.17
DEF1YKL054C IOC3P43596 787 aa7.76□□□□□ -1.17
DEF1YKL054C HST2P53686 357 aa7.76□□□□□ -1.17
DEF1YKL054C NIS1P53939 407 aa7.76□□□□□ -1.17
DEF1YKL054C CIT2P08679 460 aa7.75□□□□□ -1.17
DEF1YKL054C MDG1P53885 366 aa7.75□□□□□ -1.17
DEF1YKL054C OYE2Q03558 400 aaKnown RBP7.75□□□□□ -1.17
DEF1YKL054C ELP4Q02884 456 aaKnown RBP7.75□□□□□ -1.17
DEF1YKL054C BNI4P53858 892 aa7.74□□□□□ -1.17
DEF1YKL054C RDS2P19541 446 aaKnown RBP7.74□□□□□ -1.17
DEF1YKL054C CLB5P30283 435 aa7.74□□□□□ -1.17
DEF1YKL054C YJR107WP47145 328 aa7.74□□□□□ -1.17
DEF1YKL054C FPK1P53739 893 aa7.73□□□□□ -1.17
DEF1YKL054C ALG12P53730 551 aa7.72□□□□□ -1.17
DEF1YKL054C YPR015CQ12531 247 aa7.72□□□□□ -1.17
DEF1YKL054C FPR3P38911 411 aaKnown RBP7.72□□□□□ -1.17
DEF1YKL054C PKH3Q03306 898 aaPredicted RBP7.72□□□□□ -1.17
DEF1YKL054C CWC15Q03772 175 aaKnown RBP7.72□□□□□ -1.17
DEF1YKL054C CHL1P22516 861 aaPredicted RBP7.71□□□□□ -1.17
DEF1YKL054C ESS1P22696 170 aa7.71□□□□□ -1.17
DEF1YKL054C TSR4P25040 408 aa7.71□□□□□ -1.17
DEF1YKL054C SCJ1P25303 377 aa7.71□□□□□ -1.17
DEF1YKL054C YJU3P28321 313 aa7.71□□□□□ -1.17
DEF1YKL054C JIP5Q06214 492 aaPredicted RBP7.71□□□□□ -1.17
DEF1YKL054C SIT4P20604 311 aa7.71□□□□□ -1.18
DEF1YKL054C SPT23P35210 1082 aa7.71□□□□□ -1.18
DEF1YKL054C PMC1P38929 1173 aaPredicted RBP7.71□□□□□ -1.18
DEF1YKL054C ECM23Q02710 187 aa7.71□□□□□ -1.18
DEF1YKL054C RSC30P38781 883 aa7.7□□□□□ -1.18
DEF1YKL054C ALD3P54114 506 aa7.7□□□□□ -1.18
DEF1YKL054C SPT5P27692 1063 aaKnown RBP7.7□□□□□ -1.18
DEF1YKL054C STR2P47164 639 aa7.7□□□□□ -1.18
DEF1YKL054C NUD1P32336 851 aa7.69□□□□□ -1.18
DEF1YKL054C PPG1P32838 368 aa7.69□□□□□ -1.18
DEF1YKL054C RRP14P36080 434 aaKnown RBP7.69□□□□□ -1.18
DEF1YKL054C ZDS1P50111 915 aaKnown RBP7.69□□□□□ -1.18
DEF1YKL054C BUD6P41697 788 aa7.68□□□□□ -1.18
DEF1YKL054C VAC8P39968 578 aa7.68□□□□□ -1.18
DEF1YKL054C ISM1P48526 1002 aa7.68□□□□□ -1.18
DEF1YKL054C KAR5Q04746 504 aa7.68□□□□□ -1.18
DEF1YKL054C MMP1Q12372 583 aa7.68□□□□□ -1.18
DEF1YKL054C GRX4P32642 244 aa7.67□□□□□ -1.18
DEF1YKL054C MNL2Q12205 849 aa7.67□□□□□ -1.18
DEF1YKL054C MET1P36150 593 aa7.67□□□□□ -1.18
DEF1YKL054C NAB3P38996 802 aaKnown RBP RIP-Chip data7.67□□□□□ -1.18not detected
DEF1YKL054C YML082WQ04533 649 aaKnown RBP7.67□□□□□ -1.18
DEF1YKL054C ERF2Q06551 359 aa7.67□□□□□ -1.18
DEF1YKL054C SSB1P11484 613 aaKnown RBP7.66□□□□□ -1.18
DEF1YKL054C GRS1P38088 690 aaKnown RBP7.66□□□□□ -1.18
DEF1YKL054C SSB2P40150 613 aaKnown RBP7.66□□□□□ -1.18
DEF1YKL054C MET4P32389 672 aa7.66□□□□□ -1.18
DEF1YKL054C TPM2P40414 161 aa7.66□□□□□ -1.18
DEF1YKL054C RPN4Q03465 531 aa7.66□□□□□ -1.18
DEF1YKL054C SRP40P32583 406 aaPredicted RBP7.65□□□□□ -1.18
DEF1YKL054C PTC2P39966 464 aaKnown RBP7.65□□□□□ -1.18
DEF1YKL054C BUD20Q08004 166 aaPredicted RBP7.64□□□□□ -1.19
DEF1YKL054C FRT1Q99332 602 aa7.64□□□□□ -1.19
DEF1YKL054C GAL2P13181 574 aa7.64□□□□□ -1.19
DEF1YKL054C SEC2P17065 759 aa7.64□□□□□ -1.19
DEF1YKL054C TY1A-DR4O74302 440 aa7.63□□□□□ -1.19
DEF1YKL054C TY1A-HP0C2I4 478 aaKnown RBP7.63□□□□□ -1.19
DEF1YKL054C TY1A-AP0CX57 440 aa7.63□□□□□ -1.19
DEF1YKL054C TY1A-PR1P0CX58 440 aa7.63□□□□□ -1.19
DEF1YKL054C TY1A-ORP0CX59 440 aa7.63□□□□□ -1.19
DEF1YKL054C TY1A-PR2P0CX60 440 aa7.63□□□□□ -1.19
DEF1YKL054C TY1A-DR5P0CX65 440 aa7.63□□□□□ -1.19
DEF1YKL054C TY1A-ER2P0CX66 440 aa7.63□□□□□ -1.19
DEF1YKL054C TY1A-GR3P0CX67 440 aa7.63□□□□□ -1.19
DEF1YKL054C TY1A-LR1P0CX68 440 aa7.63□□□□□ -1.19
DEF1YKL054C TY1A-MR2P0CX69 440 aa7.63□□□□□ -1.19
DEF1YKL054C UBX7P38349 436 aa7.63□□□□□ -1.19
DEF1YKL054C BOL3P39724 118 aa7.63□□□□□ -1.19
DEF1YKL054C TY1A-JR2P47099 440 aa7.63□□□□□ -1.19
DEF1YKL054C ATG1P53104 897 aa7.63□□□□□ -1.19
DEF1YKL054C TY1A-DR1Q03856 440 aa7.63□□□□□ -1.19
DEF1YKL054C TY1A-ML1Q04706 440 aaKnown RBP7.63□□□□□ -1.19
DEF1YKL054C TY1A-BRQ12217 440 aa7.63□□□□□ -1.19
DEF1YKL054C TY1A-NL2Q12470 440 aa7.63□□□□□ -1.19
DEF1YKL054C TY1A-GR2Q12485 440 aa7.63□□□□□ -1.19
DEF1YKL054C KEX2P13134 814 aa7.63□□□□□ -1.19
DEF1YKL054C FYV10P40492 516 aa7.63□□□□□ -1.19
DEF1YKL054C YOL057WQ08225 711 aa7.63□□□□□ -1.19
DEF1YKL054C ARG8P18544 423 aa7.62□□□□□ -1.19
DEF1YKL054C ALD6P54115 500 aaKnown RBP7.62□□□□□ -1.19
DEF1YKL054C NSE3Q05541 303 aa7.62□□□□□ -1.19
DEF1YKL054C NUT2Q06213 157 aa7.62□□□□□ -1.19
DEF1YKL054C YKL091CP33324 310 aaKnown RBP7.62□□□□□ -1.19
DEF1YKL054C SSF2Q12153 453 aaPredicted RBP7.62□□□□□ -1.19
DEF1YKL054C ENP1P38333 483 aaKnown RBP7.61□□□□□ -1.19
DEF1YKL054C VPS16Q03308 798 aa7.6□□□□□ -1.19
DEF1YKL054C KTR7P40504 517 aa7.6□□□□□ -1.19
DEF1YKL054C THI12P42883 340 aa7.6□□□□□ -1.19
DEF1YKL054C THI5P43534 340 aa7.6□□□□□ -1.19
DEF1YKL054C THI11P47183 340 aa7.6□□□□□ -1.19
DEF1YKL054C YMR196WQ04336 1088 aa7.6□□□□□ -1.19
DEF1YKL054C THI13Q07748 340 aa7.6□□□□□ -1.19
DEF1YKL054C YNL115CP53925 644 aa7.59□□□□□ -1.19
DEF1YKL054C UBP3Q01477 912 aaKnown RBP RIP-Chip data7.59□□□□□ -1.19not detected
DEF1YKL054C PIN2Q12057 282 aa7.59□□□□□ -1.19
Retrieved 100 of 5,963 RNA–protein pairs in 13 ms