RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W YLL054CQ12244 843 aa1.77□□□□□ -2.13
CDC39YCR093W ENO2P00925 437 aaKnown RBP1.76□□□□□ -2.13
CDC39YCR093W KEX2P13134 814 aa1.76□□□□□ -2.13
CDC39YCR093W RAM1P22007 431 aa1.76□□□□□ -2.13
CDC39YCR093W PRE3P38624 215 aa1.76□□□□□ -2.13
CDC39YCR093W TPD3P31383 635 aa1.76□□□□□ -2.13
CDC39YCR093W DYS1P38791 387 aa1.76□□□□□ -2.13
CDC39YCR093W FIR1P40020 876 aa1.76□□□□□ -2.13
CDC39YCR093W ECM23Q02710 187 aa1.76□□□□□ -2.13
CDC39YCR093W VAN1P23642 535 aa1.76□□□□□ -2.13
CDC39YCR093W GCD6P32501 712 aaKnown RBP1.76□□□□□ -2.13
CDC39YCR093W UTR2P32623 467 aa1.76□□□□□ -2.13
CDC39YCR093W TGL4P36165 910 aa1.76□□□□□ -2.13
CDC39YCR093W SAP30P38429 201 aa1.76□□□□□ -2.13
CDC39YCR093W SHU2P38957 223 aa1.76□□□□□ -2.13
CDC39YCR093W ATG32P40458 529 aa1.76□□□□□ -2.13
CDC39YCR093W BDS1Q08347 646 aa1.76□□□□□ -2.13
CDC39YCR093W IOC2Q12072 812 aa1.76□□□□□ -2.13
CDC39YCR093W ARG82P07250 355 aa1.76□□□□□ -2.13
CDC39YCR093W BUD31P25337 157 aaPredicted RBP1.76□□□□□ -2.13
CDC39YCR093W SAM37P50110 327 aa1.76□□□□□ -2.13
CDC39YCR093W UFD2P54860 961 aa1.76□□□□□ -2.13
CDC39YCR093W GAP1P19145 602 aaPredicted RBP1.75□□□□□ -2.13
CDC39YCR093W GAS4Q08271 471 aa1.75□□□□□ -2.13
CDC39YCR093W IRC20Q06554 1556 aa1.75□□□□□ -2.13
CDC39YCR093W KAR2P16474 682 aaKnown RBP1.75□□□□□ -2.13
CDC39YCR093W UGA3P26370 528 aa1.75□□□□□ -2.13
CDC39YCR093W SCD5P34758 872 aa1.75□□□□□ -2.13
CDC39YCR093W EMP47P43555 445 aa1.75□□□□□ -2.13
CDC39YCR093W MPC54Q08550 464 aa1.75□□□□□ -2.13
CDC39YCR093W MCM16Q12262 181 aa1.75□□□□□ -2.13
CDC39YCR093W SUB2Q07478 446 aaKnown RBP1.75□□□□□ -2.13
CDC39YCR093W MIP1P15801 1254 aa1.75□□□□□ -2.13
CDC39YCR093W PRE9P23638 258 aaKnown RBP1.75□□□□□ -2.13
CDC39YCR093W BCK2P33306 851 aa1.75□□□□□ -2.13
CDC39YCR093W RRD1P40454 393 aaKnown RBP1.75□□□□□ -2.13
CDC39YCR093W SUP45P12385 437 aaKnown RBP1.75□□□□□ -2.13
CDC39YCR093W CLN2P20438 545 aa1.75□□□□□ -2.13
CDC39YCR093W SOH1P38633 127 aa1.75□□□□□ -2.13
CDC39YCR093W THI12P42883 340 aa1.75□□□□□ -2.13
CDC39YCR093W THI5P43534 340 aa1.75□□□□□ -2.13
CDC39YCR093W THI11P47183 340 aa1.75□□□□□ -2.13
CDC39YCR093W ATG20Q07528 640 aa1.75□□□□□ -2.13
CDC39YCR093W THI13Q07748 340 aa1.75□□□□□ -2.13
CDC39YCR093W YDL206WQ12424 762 aa1.75□□□□□ -2.13
CDC39YCR093W SIT4P20604 311 aa1.74□□□□□ -2.13
CDC39YCR093W UBX7P38349 436 aa1.74□□□□□ -2.13
CDC39YCR093W CDC73Q06697 393 aa1.74□□□□□ -2.13
CDC39YCR093W RAD27P26793 382 aa1.74□□□□□ -2.13
CDC39YCR093W AHP1P38013 176 aaKnown RBP1.74□□□□□ -2.13
CDC39YCR093W HXT10P43581 546 aa1.74□□□□□ -2.13
CDC39YCR093W YML020WQ03722 664 aa1.74□□□□□ -2.13
CDC39YCR093W SMC1P32908 1225 aa1.74□□□□□ -2.13
CDC39YCR093W GBP2P25555 427 aaKnown RBP RIP-Chip data1.74□□□□□ -2.13not detected
CDC39YCR093W NOB1Q08444 459 aaKnown RBP1.74□□□□□ -2.13
CDC39YCR093W PKC1P24583 1151 aa1.74□□□□□ -2.13
CDC39YCR093W TPO2P53283 614 aa1.74□□□□□ -2.13
CDC39YCR093W SRS2P12954 1174 aa1.73□□□□□ -2.13
CDC39YCR093W CIC1P38779 376 aaKnown RBP1.73□□□□□ -2.13
CDC39YCR093W RGA1P39083 1007 aa1.73□□□□□ -2.13
CDC39YCR093W TTI1P36097 1038 aa1.73□□□□□ -2.13
CDC39YCR093W CYT1P07143 309 aa1.73□□□□□ -2.13
CDC39YCR093W VRP1P37370 817 aa1.73□□□□□ -2.13
CDC39YCR093W AIM9P40053 627 aaKnown RBP1.73□□□□□ -2.13
CDC39YCR093W ISR1Q06098 443 aaKnown RBP1.73□□□□□ -2.13
CDC39YCR093W TSC13Q99190 310 aa1.73□□□□□ -2.13
CDC39YCR093W ENO1P00924 437 aaKnown RBP1.73□□□□□ -2.13
CDC39YCR093W NTH2P35172 780 aa1.73□□□□□ -2.13
CDC39YCR093W SOL3P38858 249 aa1.73□□□□□ -2.13
CDC39YCR093W BNI1P41832 1953 aa1.73□□□□□ -2.13
CDC39YCR093W SCJ1P25303 377 aa1.73□□□□□ -2.13
CDC39YCR093W PPX1P38698 397 aa1.73□□□□□ -2.13
CDC39YCR093W UBP2Q01476 1272 aa1.73□□□□□ -2.13
CDC39YCR093W LAP2Q10740 671 aa1.73□□□□□ -2.13
CDC39YCR093W MET10P39692 1035 aa1.72□□□□□ -2.13
CDC39YCR093W KTR7P40504 517 aa1.72□□□□□ -2.13
CDC39YCR093W RIM21P48565 533 aa1.72□□□□□ -2.13
CDC39YCR093W YPR097WQ06839 1073 aa1.72□□□□□ -2.13
CDC39YCR093W PEP1P32319 1579 aa1.72□□□□□ -2.13
CDC39YCR093W MCM1P11746 286 aa1.72□□□□□ -2.13
CDC39YCR093W VAC17P25591 423 aa1.72□□□□□ -2.13
CDC39YCR093W GAL2P13181 574 aa1.72□□□□□ -2.13
CDC39YCR093W BIO2P32451 375 aa1.72□□□□□ -2.13
CDC39YCR093W GLO3P38682 493 aaKnown RBP1.72□□□□□ -2.13
CDC39YCR093W MSB3P48566 633 aaPredicted RBP1.72□□□□□ -2.13
CDC39YCR093W MKS1P34072 584 aa1.72□□□□□ -2.13
CDC39YCR093W FKH1P40466 484 aa1.71□□□□□ -2.14
CDC39YCR093W LSC2P53312 427 aa1.71□□□□□ -2.14
CDC39YCR093W WRS1Q12109 432 aaKnown RBP1.71□□□□□ -2.14
CDC39YCR093W UBP1P25037 809 aa1.71□□□□□ -2.14
CDC39YCR093W RSC30P38781 883 aa1.71□□□□□ -2.14
CDC39YCR093W MAD1P40957 749 aa1.71□□□□□ -2.14
CDC39YCR093W TUB4P53378 473 aa1.71□□□□□ -2.14
CDC39YCR093W NST1P53935 1240 aa1.71□□□□□ -2.14
CDC39YCR093W UTP14Q04500 899 aaKnown RBP1.71□□□□□ -2.14
CDC39YCR093W YJU3P28321 313 aa1.71□□□□□ -2.14
CDC39YCR093W ACF4P47129 309 aa1.71□□□□□ -2.14
CDC39YCR093W ATG1P53104 897 aa1.71□□□□□ -2.14
CDC39YCR093W RMD1Q03441 430 aa1.71□□□□□ -2.14
CDC39YCR093W FRA1Q07825 749 aa1.71□□□□□ -2.14
Retrieved 100 of 5,963 RNA–protein pairs in 30.2 ms