RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C YJR085CP47131 105 aaKnown RBP1.99□□□□□ -2.09
UBP11YKR098C CWC25P53854 179 aaKnown RBP1.99□□□□□ -2.09
UBP11YKR098C ELP3Q02908 557 aaKnown RBP1.99□□□□□ -2.09
UBP11YKR098C RVB1Q03940 463 aaKnown RBP1.99□□□□□ -2.09
UBP11YKR098C ERV41Q04651 352 aa1.99□□□□□ -2.09
UBP11YKR098C RRN11Q04712 507 aa1.99□□□□□ -2.09
UBP11YKR098C PBA1Q05778 276 aa1.99□□□□□ -2.09
UBP11YKR098C EAF3Q12432 401 aa1.99□□□□□ -2.09
UBP11YKR098C CAR2P07991 424 aaKnown RBP1.98□□□□□ -2.09
UBP11YKR098C CHA1P25379 360 aaKnown RBP1.98□□□□□ -2.09
UBP11YKR098C VMA5P31412 392 aaKnown RBP1.98□□□□□ -2.09
UBP11YKR098C RAD23P32628 398 aaKnown RBP1.98□□□□□ -2.09
UBP11YKR098C YPT35P38815 214 aaKnown RBP1.98□□□□□ -2.09
UBP11YKR098C FET3P38993 636 aa1.98□□□□□ -2.09
UBP11YKR098C TAF6P53040 516 aa1.98□□□□□ -2.09
UBP11YKR098C YGL185CP53100 379 aa1.98□□□□□ -2.09
UBP11YKR098C YGR168CP53293 376 aa1.98□□□□□ -2.09
UBP11YKR098C ALF1P53904 254 aa1.98□□□□□ -2.09
UBP11YKR098C PRM6Q04705 352 aa1.98□□□□□ -2.09
UBP11YKR098C RTN1Q04947 295 aaKnown RBP1.98□□□□□ -2.09
UBP11YKR098C YPR091CQ06833 770 aa1.98□□□□□ -2.09
UBP11YKR098C YDL114WQ07530 308 aa1.98□□□□□ -2.09
UBP11YKR098C YOR387CQ08910 206 aa1.98□□□□□ -2.09
UBP11YKR098C FCY22Q12119 530 aa1.98□□□□□ -2.09
UBP11YKR098C APC2Q12440 853 aa1.98□□□□□ -2.09
UBP11YKR098C POP5P28005 173 aa1.98□□□□□ -2.09
UBP11YKR098C FUN26P31381 517 aa1.98□□□□□ -2.09
UBP11YKR098C SPO23P33757 523 aa1.98□□□□□ -2.09
UBP11YKR098C YKL162CP36052 402 aa1.98□□□□□ -2.09
UBP11YKR098C YKL070WP36087 169 aa1.98□□□□□ -2.09
UBP11YKR098C MMS21P38632 267 aa1.98□□□□□ -2.09
UBP11YKR098C NDT80P38830 627 aa1.98□□□□□ -2.09
UBP11YKR098C YAT2P40017 923 aa1.98□□□□□ -2.09
UBP11YKR098C MAM33P40513 266 aa1.98□□□□□ -2.09
UBP11YKR098C CIN2P46670 268 aa1.98□□□□□ -2.09
UBP11YKR098C LOH1P47055 219 aa1.98□□□□□ -2.09
UBP11YKR098C YJR030CP47101 745 aa1.98□□□□□ -2.09
UBP11YKR098C YGL260WP53056 76 aa1.98□□□□□ -2.09
UBP11YKR098C BOR1P53838 576 aa1.98□□□□□ -2.09
UBP11YKR098C MTQ1P53944 314 aa1.98□□□□□ -2.09
UBP11YKR098C APC4Q04601 652 aa1.98□□□□□ -2.09
UBP11YKR098C DNL4Q08387 944 aaPredicted RBP1.98□□□□□ -2.09
UBP11YKR098C PCL9Q12477 304 aa1.98□□□□□ -2.09
UBP11YKR098C SPT15P13393 240 aaKnown RBP1.97□□□□□ -2.09
UBP11YKR098C MSI1P13712 422 aa1.97□□□□□ -2.09
UBP11YKR098C MEK1P24719 497 aaPredicted RBP1.97□□□□□ -2.09
UBP11YKR098C DCC1P25559 380 aa1.97□□□□□ -2.09
UBP11YKR098C ERG9P29704 444 aa1.97□□□□□ -2.09
UBP11YKR098C YBL059WP34224 193 aa1.97□□□□□ -2.09
UBP11YKR098C AVT5P38176 459 aa1.97□□□□□ -2.09
UBP11YKR098C RFS1P38234 210 aaKnown RBP1.97□□□□□ -2.09
UBP11YKR098C ECM8P38246 354 aa1.97□□□□□ -2.09
UBP11YKR098C YHR131CP38835 850 aa1.97□□□□□ -2.09
UBP11YKR098C YHR218WP38899 603 aa1.97□□□□□ -2.09
UBP11YKR098C INA22P40576 216 aa1.97□□□□□ -2.09
UBP11YKR098C REE1P40893 198 aa1.97□□□□□ -2.09
UBP11YKR098C HAC1P41546 238 aa1.97□□□□□ -2.09
UBP11YKR098C GTO1P48239 356 aa1.97□□□□□ -2.09
UBP11YKR098C SCS3P53012 380 aa1.97□□□□□ -2.09
UBP11YKR098C YMR111CQ04461 462 aaPredicted RBP1.97□□□□□ -2.09
UBP11YKR098C RIF2Q06208 395 aa1.97□□□□□ -2.09
UBP11YKR098C ALE1Q08548 619 aa1.97□□□□□ -2.09
UBP11YKR098C TMS1Q12116 473 aa1.97□□□□□ -2.09
UBP11YKR098C RPB5P20434 215 aa1.96□□□□□ -2.1
UBP11YKR098C RPL16AP26784 199 aaKnown RBP1.96□□□□□ -2.1
UBP11YKR098C HXT1P32465 570 aa1.96□□□□□ -2.1
UBP11YKR098C CSE2P33308 149 aa1.96□□□□□ -2.1
UBP11YKR098C YKR015CP36111 568 aa1.96□□□□□ -2.1
UBP11YKR098C PTH1P38876 190 aaKnown RBP1.96□□□□□ -2.1
UBP11YKR098C PTI1P39927 425 aaPredicted RBP1.96□□□□□ -2.1
UBP11YKR098C PAN6P40459 309 aa1.96□□□□□ -2.1
UBP11YKR098C MND1P53102 219 aa1.96□□□□□ -2.1
UBP11YKR098C MST27P53176 234 aa1.96□□□□□ -2.1
UBP11YKR098C PXR1P53335 271 aaPredicted RBP1.96□□□□□ -2.1
UBP11YKR098C KAP95Q06142 861 aaKnown RBP1.96□□□□□ -2.1
UBP11YKR098C FDH1Q08911 376 aa1.96□□□□□ -2.1
UBP11YKR098C LDB17Q12342 491 aa1.96□□□□□ -2.1
UBP11YKR098C YDL199CQ12407 687 aa1.96□□□□□ -2.1
UBP11YKR098C YPR1Q12458 312 aa1.96□□□□□ -2.1
UBP11YKR098C HTZ1Q12692 134 aaKnown RBP1.96□□□□□ -2.1
UBP11YKR098C STE2D6VTK4 431 aa1.96□□□□□ -2.1
UBP11YKR098C SAL1D6W196 494 aa1.96□□□□□ -2.1
UBP11YKR098C HHF1P02309 103 aaKnown RBP1.96□□□□□ -2.1
UBP11YKR098C HEM4P06174 275 aa1.96□□□□□ -2.1
UBP11YKR098C NAM2P11325 894 aa1.96□□□□□ -2.1
UBP11YKR098C NAM9P27929 486 aa1.96□□□□□ -2.1
UBP11YKR098C ACB1P31787 87 aa1.96□□□□□ -2.1
UBP11YKR098C RPC25P35718 212 aa1.96□□□□□ -2.1
UBP11YKR098C PEX18P38855 283 aa1.96□□□□□ -2.1
UBP11YKR098C BNS1P50084 137 aa1.96□□□□□ -2.1
UBP11YKR098C UBX2Q04228 584 aa1.96□□□□□ -2.1
UBP11YKR098C MFG1Q07684 458 aa1.96□□□□□ -2.1
UBP11YKR098C SLM3Q12093 417 aa1.96□□□□□ -2.1
UBP11YKR098C UBA3Q99344 299 aa1.96□□□□□ -2.1
UBP11YKR098C SSA3P09435 649 aaKnown RBP1.95□□□□□ -2.1
UBP11YKR098C RPS18AP0CX55 146 aaKnown RBP1.95□□□□□ -2.1
UBP11YKR098C RPS18BP0CX56 146 aaPredicted RBP1.95□□□□□ -2.1
UBP11YKR098C RPL5P26321 297 aaKnown RBP1.95□□□□□ -2.1
UBP11YKR098C DEG1P31115 442 aaKnown RBP1.95□□□□□ -2.1
UBP11YKR098C ECT1P33412 323 aa1.95□□□□□ -2.1
Retrieved 100 of 5,963 RNA–protein pairs in 43.6 ms