RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeast

Gene RPN11, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN11	YFR004W	ARP10	Q04549	284 aa		5.69	□□□□□ -1.5
RPN11	YFR004W	GRS2	Q06817	618 aa		5.69	□□□□□ -1.5
RPN11	YFR004W	GSH2	Q08220	491 aa		5.69	□□□□□ -1.5
RPN11	YFR004W	YDR262W	Q12331	272 aa		5.69	□□□□□ -1.5
RPN11	YFR004W	ENA5	Q12691	1091 aa		5.69	□□□□□ -1.5
RPN11	YFR004W	RIB3	Q99258	208 aa		5.69	□□□□□ -1.5
RPN11	YFR004W	ADE8	P04161	214 aa		5.68	□□□□□ -1.5
RPN11	YFR004W	CPA1	P07258	411 aa	Known RBP	5.68	□□□□□ -1.5
RPN11	YFR004W	PHO84	P25297	587 aa	Known RBP	5.68	□□□□□ -1.5
RPN11	YFR004W	VPS21	P36017	210 aa	Known RBP	5.68	□□□□□ -1.5
RPN11	YFR004W	YPT52	P36018	234 aa	Known RBP	5.68	□□□□□ -1.5
RPN11	YFR004W	SRL3	P36167	246 aa		5.68	□□□□□ -1.5
RPN11	YFR004W	CHS7	P38843	316 aa		5.68	□□□□□ -1.5
RPN11	YFR004W	MTG2	P38860	518 aa		5.68	□□□□□ -1.5
RPN11	YFR004W	IPT1	P38954	527 aa		5.68	□□□□□ -1.5
RPN11	YFR004W	AZF1	P41696	914 aa		5.68	□□□□□ -1.5
RPN11	YFR004W	PFA3	P42836	336 aa		5.68	□□□□□ -1.5
RPN11	YFR004W	YJL055W	P47044	245 aa		5.68	□□□□□ -1.5
RPN11	YFR004W	UBX6	P47049	396 aa		5.68	□□□□□ -1.5
RPN11	YFR004W	YJR030C	P47101	745 aa		5.68	□□□□□ -1.5
RPN11	YFR004W	YJR149W	P47177	404 aa		5.68	□□□□□ -1.5
RPN11	YFR004W	PRM8	P53174	237 aa		5.68	□□□□□ -1.5
RPN11	YFR004W	YGR045C	P53229	120 aa		5.68	□□□□□ -1.5
RPN11	YFR004W	TWF1	P53250	332 aa		5.68	□□□□□ -1.5
RPN11	YFR004W	RRN5	Q02983	363 aa		5.68	□□□□□ -1.5
RPN11	YFR004W	GIP3	Q03016	1276 aa		5.68	□□□□□ -1.5
RPN11	YFR004W	MDM36	Q06820	579 aa		5.68	□□□□□ -1.5
RPN11	YFR004W	YTM1	Q12024	460 aa	Predicted RBP	5.68	□□□□□ -1.5
RPN11	YFR004W	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	5.68	□□□□□ -1.5	not detected
RPN11	YFR004W	PST2	Q12335	198 aa	Known RBP	5.68	□□□□□ -1.5
RPN11	YFR004W	TRM10	Q12400	293 aa		5.68	□□□□□ -1.5
RPN11	YFR004W	RPL24B	P24000	155 aa	Known RBP	5.67	□□□□□ -1.5
RPN11	YFR004W	YCR006C	P25350	157 aa		5.67	□□□□□ -1.5
RPN11	YFR004W	TRX3	P25372	127 aa		5.67	□□□□□ -1.5
RPN11	YFR004W	CMK1	P27466	446 aa	Known RBP	5.67	□□□□□ -1.5
RPN11	YFR004W	NTH1	P32356	751 aa		5.67	□□□□□ -1.5
RPN11	YFR004W	PRP19	P32523	503 aa	Known RBP	5.67	□□□□□ -1.5
RPN11	YFR004W	CAT2	P32796	670 aa	Known RBP	5.67	□□□□□ -1.5
RPN11	YFR004W	GMH1	P36125	273 aa		5.67	□□□□□ -1.5
RPN11	YFR004W	RPF2	P36160	344 aa	Known RBP	5.67	□□□□□ -1.5
RPN11	YFR004W	YHR033W	P38690	423 aa		5.67	□□□□□ -1.5
RPN11	YFR004W	YHR127W	P38833	243 aa	Known RBP	5.67	□□□□□ -1.5
RPN11	YFR004W	GPP2	P40106	250 aa	Known RBP	5.67	□□□□□ -1.5
RPN11	YFR004W	ALK1	P43633	760 aa	Known RBP	5.67	□□□□□ -1.5
RPN11	YFR004W	BIO3	P50277	480 aa		5.67	□□□□□ -1.5
RPN11	YFR004W	CWC23	P52868	283 aa	Predicted RBP	5.67	□□□□□ -1.5
RPN11	YFR004W	MDM34	P53083	459 aa		5.67	□□□□□ -1.5
RPN11	YFR004W	PBP1	P53297	722 aa	Known RBP	5.67	□□□□□ -1.5
RPN11	YFR004W	NUP49	Q02199	472 aa		5.67	□□□□□ -1.5
RPN11	YFR004W	YLR345W	Q06137	509 aa		5.67	□□□□□ -1.5
RPN11	YFR004W	ATG33	Q06485	197 aa		5.67	□□□□□ -1.5
RPN11	YFR004W	CDA2	Q06703	312 aa		5.67	□□□□□ -1.5
RPN11	YFR004W	ENV7	Q12003	364 aa		5.67	□□□□□ -1.5
RPN11	YFR004W	THP3	Q12049	470 aa	Known RBP	5.67	□□□□□ -1.5
RPN11	YFR004W	STT4	P37297	1900 aa		5.67	□□□□□ -1.5
RPN11	YFR004W	AI3	P03877	415 aa		5.66	□□□□□ -1.5
RPN11	YFR004W	HMG1	P12683	1054 aa		5.66	□□□□□ -1.5
RPN11	YFR004W	YSR3	P23501	404 aa		5.66	□□□□□ -1.5
RPN11	YFR004W	BUD23	P25627	275 aa	Predicted RBP	5.66	□□□□□ -1.5
RPN11	YFR004W	DAL3	P32459	195 aa		5.66	□□□□□ -1.5
RPN11	YFR004W	LHP1	P33399	275 aa	Known RBP	5.66	□□□□□ -1.5
RPN11	YFR004W	SPO23	P33757	523 aa		5.66	□□□□□ -1.5
RPN11	YFR004W	HCS1	P34243	683 aa		5.66	□□□□□ -1.5
RPN11	YFR004W	DED81	P38707	554 aa	Known RBP	5.66	□□□□□ -1.5
RPN11	YFR004W	ARN2	P38724	620 aa		5.66	□□□□□ -1.5
RPN11	YFR004W	YLF2	P38746	405 aa		5.66	□□□□□ -1.5
RPN11	YFR004W	SPO73	P40031	143 aa		5.66	□□□□□ -1.5
RPN11	YFR004W	TPA1	P40032	644 aa	Known RBP	5.66	□□□□□ -1.5
RPN11	YFR004W	JLP2	P40206	208 aa		5.66	□□□□□ -1.5
RPN11	YFR004W	YJL043W	P47053	257 aa		5.66	□□□□□ -1.5
RPN11	YFR004W	RAI1	P53063	387 aa	Known RBP	5.66	□□□□□ -1.5
RPN11	YFR004W	MPS2	P53159	387 aa		5.66	□□□□□ -1.5
RPN11	YFR004W	IGO1	P53897	168 aa		5.66	□□□□□ -1.5
RPN11	YFR004W	RHO3	Q00245	231 aa	Known RBP	5.66	□□□□□ -1.5
RPN11	YFR004W	MAK3	Q03503	176 aa		5.66	□□□□□ -1.5
RPN11	YFR004W	YMD8	Q03697	442 aa		5.66	□□□□□ -1.5
RPN11	YFR004W	MUS81	Q04149	632 aa	Predicted RBP	5.66	□□□□□ -1.5
RPN11	YFR004W	SIZ1	Q04195	904 aa		5.66	□□□□□ -1.5
RPN11	YFR004W	ERB1	Q04660	807 aa	Known RBP	5.66	□□□□□ -1.5
RPN11	YFR004W	GAL83	Q04739	417 aa		5.66	□□□□□ -1.5
RPN11	YFR004W	RRP45	Q05636	305 aa	Known RBP	5.66	□□□□□ -1.5
RPN11	YFR004W	VPS74	Q06385	345 aa		5.66	□□□□□ -1.5
RPN11	YFR004W	YLR030W	Q07967	263 aa		5.66	□□□□□ -1.5
RPN11	YFR004W	YLR036C	Q07986	203 aa		5.66	□□□□□ -1.5
RPN11	YFR004W	ALG6	Q12001	544 aa	Known RBP	5.66	□□□□□ -1.5
RPN11	YFR004W	PFA4	Q12006	378 aa		5.66	□□□□□ -1.5
RPN11	YFR004W	MED2	Q12124	431 aa		5.66	□□□□□ -1.5
RPN11	YFR004W	RBD2	Q12270	262 aa		5.66	□□□□□ -1.5
RPN11	YFR004W	HSP42	Q12329	375 aa		5.66	□□□□□ -1.5
RPN11	YFR004W	ALG7	P07286	448 aa		5.65	□□□□□ -1.5
RPN11	YFR004W	RPC40	P07703	335 aa	Known RBP	5.65	□□□□□ -1.5
RPN11	YFR004W	RPS21A	P0C0V8	87 aa	Known RBP	5.65	□□□□□ -1.5
RPN11	YFR004W	NAR1	P23503	491 aa	Known RBP	5.65	□□□□□ -1.5
RPN11	YFR004W	ARO7	P32178	256 aa		5.65	□□□□□ -1.5
RPN11	YFR004W	REC104	P33323	182 aa		5.65	□□□□□ -1.5
RPN11	YFR004W	ATG14	P38270	344 aa		5.65	□□□□□ -1.5
RPN11	YFR004W	STP2	P38704	541 aa		5.65	□□□□□ -1.5
RPN11	YFR004W	AST2	P39945	430 aa	Known RBP	5.65	□□□□□ -1.5
RPN11	YFR004W	GIP2	P40036	548 aa		5.65	□□□□□ -1.5
RPN11	YFR004W	LRO1	P40345	661 aa		5.65	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 24 ms