RNA–Protein interactions for RNA: YOR098C

NUP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP1, Length 3,231 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP1	YOR098C	RTC4	P53850	401 aa		5.12	□□□□□ -1.59
NUP1	YOR098C	HCR1	Q05775	265 aa	Known RBP	5.12	□□□□□ -1.59
NUP1	YOR098C	DUS4	Q06063	367 aa		5.12	□□□□□ -1.59
NUP1	YOR098C	YLR177W	Q06251	628 aa		5.12	□□□□□ -1.59
NUP1	YOR098C	SIR3	P06701	978 aa		5.12	□□□□□ -1.59
NUP1	YOR098C	CIN8	P27895	1000 aa		5.12	□□□□□ -1.59
NUP1	YOR098C	MSS51	P32335	436 aa		5.12	□□□□□ -1.59
NUP1	YOR098C	YET1	P35723	206 aa		5.12	□□□□□ -1.59
NUP1	YOR098C	PCF11	P39081	626 aa	Predicted RBP	5.12	□□□□□ -1.59
NUP1	YOR098C	PRM9	P39551	298 aa		5.12	□□□□□ -1.59
NUP1	YOR098C	YFL066C	P43538	392 aa		5.12	□□□□□ -1.59
NUP1	YOR098C	YDL186W	P48568	277 aa		5.12	□□□□□ -1.59
NUP1	YOR098C	BNA7	Q04066	261 aa		5.12	□□□□□ -1.59
NUP1	YOR098C	YDL176W	Q12027	708 aa		5.12	□□□□□ -1.59
NUP1	YOR098C	CMC2	Q3E7A4	109 aa		5.12	□□□□□ -1.59
NUP1	YOR098C	LOS1	P33418	1100 aa	Predicted RBP	5.11	□□□□□ -1.59
NUP1	YOR098C	INM1	P38710	295 aa		5.11	□□□□□ -1.59
NUP1	YOR098C	UBA4	P38820	440 aa		5.11	□□□□□ -1.59
NUP1	YOR098C	YGR151C	P53287	111 aa		5.11	□□□□□ -1.59
NUP1	YOR098C	THP1	Q08231	455 aa		5.11	□□□□□ -1.59
NUP1	YOR098C	PRP46	Q12417	451 aa	Predicted RBP	5.11	□□□□□ -1.59
NUP1	YOR098C	LAG2	Q92325	660 aa		5.11	□□□□□ -1.59
NUP1	YOR098C	PRP21	P32524	280 aa	Predicted RBP	5.11	□□□□□ -1.59
NUP1	YOR098C	YNR014W	P53719	212 aa		5.11	□□□□□ -1.59
NUP1	YOR098C	SPP2	Q02521	185 aa		5.11	□□□□□ -1.59
NUP1	YOR098C	PLM2	Q04383	521 aa		5.11	□□□□□ -1.59
NUP1	YOR098C	GFD1	Q04839	188 aa	Known RBP	5.11	□□□□□ -1.59
NUP1	YOR098C	FUS2	Q05670	677 aa		5.11	□□□□□ -1.59
NUP1	YOR098C	ABP140	Q08641	628 aa	Known RBP	5.11	□□□□□ -1.59
NUP1	YOR098C	RAX1	Q08760	435 aa		5.11	□□□□□ -1.59
NUP1	YOR098C	GLE1	Q12315	538 aa		5.11	□□□□□ -1.59
NUP1	YOR098C	COX2	P00410	251 aa		5.1	□□□□□ -1.59
NUP1	YOR098C	CHS1	P08004	1131 aa		5.1	□□□□□ -1.59
NUP1	YOR098C	SPO12	P17123	173 aa		5.1	□□□□□ -1.59
NUP1	YOR098C	MSB1	P21339	1137 aa	Known RBP	5.1	□□□□□ -1.59
NUP1	YOR098C	RAD57	P25301	460 aa		5.1	□□□□□ -1.59
NUP1	YOR098C	SNL1	P40548	159 aa		5.1	□□□□□ -1.59
NUP1	YOR098C	YAR1	P46683	200 aa		5.1	□□□□□ -1.59
NUP1	YOR098C	PHO86	P46956	311 aa		5.1	□□□□□ -1.59
NUP1	YOR098C	COG2	P53271	262 aa		5.1	□□□□□ -1.59
NUP1	YOR098C	RNH203	Q12338	110 aa		5.1	□□□□□ -1.59
NUP1	YOR098C	UBA3	Q99344	299 aa		5.1	□□□□□ -1.59
NUP1	YOR098C	DBR1	P24309	405 aa	Known RBP	5.1	□□□□□ -1.59
NUP1	YOR098C	CSM1	P25651	190 aa		5.1	□□□□□ -1.59
NUP1	YOR098C	TCM62	P38228	572 aa	Known RBP	5.1	□□□□□ -1.59
NUP1	YOR098C	CCT2	P39076	527 aa	Known RBP	5.1	□□□□□ -1.59
NUP1	YOR098C	DSE1	P40077	573 aa		5.1	□□□□□ -1.59
NUP1	YOR098C	HXT9	P40885	567 aa		5.1	□□□□□ -1.59
NUP1	YOR098C	ILM1	P47155	203 aa		5.1	□□□□□ -1.59
NUP1	YOR098C	PMT5	P52867	743 aa		5.1	□□□□□ -1.59
NUP1	YOR098C	HXT11	P54862	567 aa		5.1	□□□□□ -1.59
NUP1	YOR098C	ARO10	Q06408	635 aa		5.1	□□□□□ -1.59
NUP1	YOR098C	LOT6	Q07923	191 aa		5.1	□□□□□ -1.59
NUP1	YOR098C	YPR022C	Q12139	1133 aa		5.1	□□□□□ -1.59
NUP1	YOR098C	NUF2	P33895	451 aa		5.1	□□□□□ -1.59
NUP1	YOR098C	SHP1	P34223	423 aa		5.1	□□□□□ -1.59
NUP1	YOR098C	LAS21	P40367	830 aa		5.1	□□□□□ -1.59
NUP1	YOR098C	ZPR1	P53303	486 aa	Known RBP	5.1	□□□□□ -1.59
NUP1	YOR098C	NOP13	P53883	403 aa	Known RBP RIP-Chip data	5.1	□□□□□ -1.59	not detected
NUP1	YOR098C	APM1	Q00776	475 aa	Predicted RBP	5.1	□□□□□ -1.59
NUP1	YOR098C	YLR283W	Q05867	314 aa		5.1	□□□□□ -1.59
NUP1	YOR098C	PIG1	Q06216	648 aa		5.1	□□□□□ -1.59
NUP1	YOR098C	YDL177C	Q12257	170 aa		5.1	□□□□□ -1.59
NUP1	YOR098C	YLL053C	P0CD98	152 aa		5.09	□□□□□ -1.59
NUP1	YOR098C	MET16	P18408	261 aa	Predicted RBP	5.09	□□□□□ -1.59
NUP1	YOR098C	HIS7	P33734	552 aa	Known RBP	5.09	□□□□□ -1.59
NUP1	YOR098C	AIM29	P36154	155 aa		5.09	□□□□□ -1.59
NUP1	YOR098C	YMR262W	P38430	313 aa		5.09	□□□□□ -1.59
NUP1	YOR098C	ARP1	P38696	384 aa		5.09	□□□□□ -1.59
NUP1	YOR098C	SAS2	P40963	338 aa		5.09	□□□□□ -1.59
NUP1	YOR098C	HIT1	P46973	164 aa		5.09	□□□□□ -1.59
NUP1	YOR098C	ATG4	P53867	494 aa		5.09	□□□□□ -1.59
NUP1	YOR098C	MRP51	Q02950	344 aa		5.09	□□□□□ -1.59
NUP1	YOR098C	SNT309	Q06091	175 aa	Predicted RBP	5.09	□□□□□ -1.59
NUP1	YOR098C	SSK22	P25390	1331 aa	Predicted RBP	5.09	□□□□□ -1.59
NUP1	YOR098C	CDC8	P00572	216 aa		5.09	□□□□□ -1.59
NUP1	YOR098C	RPS16A	P0CX51	143 aa	Known RBP	5.09	□□□□□ -1.59
NUP1	YOR098C	RPS16B	P0CX52	143 aa	Known RBP	5.09	□□□□□ -1.59
NUP1	YOR098C	COS9	P36034	407 aa		5.09	□□□□□ -1.59
NUP1	YOR098C	YPS6	P40583	537 aa		5.09	□□□□□ -1.59
NUP1	YOR098C	HRD3	Q05787	833 aa		5.09	□□□□□ -1.59
NUP1	YOR098C	ARR2	Q06597	130 aa		5.09	□□□□□ -1.59
NUP1	YOR098C	ALE1	Q08548	619 aa		5.09	□□□□□ -1.59
NUP1	YOR098C	OPI3	P05375	206 aa		5.08	□□□□□ -1.6
NUP1	YOR098C	COQ1	P18900	473 aa		5.08	□□□□□ -1.6
NUP1	YOR098C	RNR3	P21672	869 aa	Known RBP	5.08	□□□□□ -1.6
NUP1	YOR098C	PRR1	P28708	518 aa		5.08	□□□□□ -1.6
NUP1	YOR098C	MSK1	P32048	576 aa		5.08	□□□□□ -1.6
NUP1	YOR098C	SKG6	P32900	734 aa	Predicted RBP	5.08	□□□□□ -1.6
NUP1	YOR098C	AIM33	Q04516	312 aa		5.08	□□□□□ -1.6
NUP1	YOR098C	RUP1	Q12242	671 aa		5.08	□□□□□ -1.6
NUP1	YOR098C	PBN1	P25580	416 aa		5.08	□□□□□ -1.6
NUP1	YOR098C	RPS5	P26783	225 aa	Known RBP	5.08	□□□□□ -1.6
NUP1	YOR098C	ACH1	P32316	526 aa		5.08	□□□□□ -1.6
NUP1	YOR098C	PTR2	P32901	601 aa		5.08	□□□□□ -1.6
NUP1	YOR098C	YEL020C	P39994	560 aa		5.08	□□□□□ -1.6
NUP1	YOR098C	SYG1	P40528	902 aa		5.08	□□□□□ -1.6
NUP1	YOR098C	RIM8	P53179	542 aa		5.08	□□□□□ -1.6
NUP1	YOR098C	DLT1	Q04216	342 aa		5.08	□□□□□ -1.6
NUP1	YOR098C	COQ11	Q05892	277 aa		5.08	□□□□□ -1.6

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