RNA–Protein interactions for RNA: YPL065W

VPS28, Transcript of Component of the ESCRT-I complex, yeastyeast

Gene VPS28, Length 729 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS28YPL065W YOR387CQ08910 206 aa4.17□□□□□ -1.74
VPS28YPL065W TPT1Q12272 230 aaKnown RBP4.17□□□□□ -1.74
VPS28YPL065W ERV2Q12284 196 aa4.17□□□□□ -1.74
VPS28YPL065W TRP1P00912 224 aa4.16□□□□□ -1.74
VPS28YPL065W CYC3P06182 269 aa4.16□□□□□ -1.74
VPS28YPL065W DAP2P18962 818 aa4.16□□□□□ -1.74
VPS28YPL065W OPI1P21957 404 aa4.16□□□□□ -1.74
VPS28YPL065W YCL068CP25593 260 aa4.16□□□□□ -1.74
VPS28YPL065W ATP3P38077 311 aaKnown RBP4.16□□□□□ -1.74
VPS28YPL065W CHK1P38147 527 aa4.16□□□□□ -1.74
VPS28YPL065W NDT80P38830 627 aa4.16□□□□□ -1.74
VPS28YPL065W PMT5P52867 743 aa4.16□□□□□ -1.74
VPS28YPL065W MTM1P53320 366 aa4.16□□□□□ -1.74
VPS28YPL065W EOS1P53938 366 aa4.16□□□□□ -1.74
VPS28YPL065W ELP3Q02908 557 aaKnown RBP4.16□□□□□ -1.74
VPS28YPL065W CCE1Q03702 353 aa4.16□□□□□ -1.74
VPS28YPL065W RRN11Q04712 507 aa4.16□□□□□ -1.74
VPS28YPL065W NCA2Q12374 616 aa4.16□□□□□ -1.74
VPS28YPL065W SKS1Q12505 502 aa4.16□□□□□ -1.74
VPS28YPL065W NAM9P27929 486 aa4.15□□□□□ -1.75
VPS28YPL065W YBL059WP34224 193 aa4.15□□□□□ -1.75
VPS28YPL065W ADH5P38113 351 aaKnown RBP4.15□□□□□ -1.75
VPS28YPL065W TOS3P43637 560 aa4.15□□□□□ -1.75
VPS28YPL065W TOS2P50078 622 aa4.15□□□□□ -1.75
VPS28YPL065W YDR061WQ12298 539 aa4.15□□□□□ -1.75
VPS28YPL065W YRM1Q12340 786 aa4.15□□□□□ -1.75
VPS28YPL065W SLM5P25345 492 aaKnown RBP4.14□□□□□ -1.75
VPS28YPL065W MSP1P28737 362 aa4.14□□□□□ -1.75
VPS28YPL065W DEG1P31115 442 aaKnown RBP4.14□□□□□ -1.75
VPS28YPL065W SDH3P33421 198 aa4.14□□□□□ -1.75
VPS28YPL065W SPP381P38282 291 aaPredicted RBP4.14□□□□□ -1.75
VPS28YPL065W PAC11P40960 533 aa4.14□□□□□ -1.75
VPS28YPL065W ASN2P49090 572 aaKnown RBP4.14□□□□□ -1.75
VPS28YPL065W URC2Q04411 772 aa4.14□□□□□ -1.75
VPS28YPL065W MRPL35Q06678 367 aa4.14□□□□□ -1.75
VPS28YPL065W SMF3Q12078 473 aaPredicted RBP4.14□□□□□ -1.75
VPS28YPL065W HHF1P02309 103 aaKnown RBP4.13□□□□□ -1.75
VPS28YPL065W RPL6BP05739 176 aaKnown RBP4.13□□□□□ -1.75
VPS28YPL065W RPS8AP0CX39 200 aaKnown RBP4.13□□□□□ -1.75
VPS28YPL065W RPS8BP0CX40 200 aaKnown RBP4.13□□□□□ -1.75
VPS28YPL065W RPL12AP0CX53 165 aaKnown RBP4.13□□□□□ -1.75
VPS28YPL065W RPL12BP0CX54 165 aa4.13□□□□□ -1.75
VPS28YPL065W SPT15P13393 240 aaKnown RBP4.13□□□□□ -1.75
VPS28YPL065W EXG1P23776 448 aaKnown RBP4.13□□□□□ -1.75
VPS28YPL065W LAS1P36146 502 aaPredicted RBP4.13□□□□□ -1.75
VPS28YPL065W KAP104P38217 918 aaKnown RBP4.13□□□□□ -1.75
VPS28YPL065W PTH1P38876 190 aaKnown RBP4.13□□□□□ -1.75
VPS28YPL065W RPL6AQ02326 176 aaKnown RBP4.13□□□□□ -1.75
VPS28YPL065W IPK1Q06667 281 aa4.13□□□□□ -1.75
VPS28YPL065W RAX1Q08760 435 aa4.13□□□□□ -1.75
VPS28YPL065W SPT7P35177 1332 aa4.13□□□□□ -1.75
VPS28YPL065W ATP1P07251 545 aaKnown RBP4.12□□□□□ -1.75
VPS28YPL065W CAP2P13517 287 aa4.12□□□□□ -1.75
VPS28YPL065W SBE22P38814 852 aa4.12□□□□□ -1.75
VPS28YPL065W YHR177WP38867 453 aa4.12□□□□□ -1.75
VPS28YPL065W STE24P47154 453 aa4.12□□□□□ -1.75
VPS28YPL065W HER2Q03557 464 aa4.12□□□□□ -1.75
VPS28YPL065W YFH1Q07540 174 aa4.12□□□□□ -1.75
VPS28YPL065W BSC6Q08280 497 aa4.12□□□□□ -1.75
VPS28YPL065W CUE5Q08412 411 aaKnown RBP4.12□□□□□ -1.75
VPS28YPL065W TMS1Q12116 473 aa4.12□□□□□ -1.75
VPS28YPL065W POT1P27796 417 aaKnown RBP RIP-Chip data4.11□□□□□ -1.75not detected
VPS28YPL065W COX13P32799 129 aa4.11□□□□□ -1.75
VPS28YPL065W MNS1P32906 549 aa4.11□□□□□ -1.75
VPS28YPL065W PAD1P33751 242 aaKnown RBP RIP-Chip data4.11□□□□□ -1.75not detected
VPS28YPL065W RRP1P35178 278 aaPredicted RBP4.11□□□□□ -1.75
VPS28YPL065W DAD2P36162 133 aa4.11□□□□□ -1.75
VPS28YPL065W MSG5P38590 489 aa4.11□□□□□ -1.75
VPS28YPL065W ATM1P40416 690 aa4.11□□□□□ -1.75
VPS28YPL065W YGR016WP53209 190 aa4.11□□□□□ -1.75
VPS28YPL065W RTT102P53330 157 aa4.11□□□□□ -1.75
VPS28YPL065W CWC25P53854 179 aaKnown RBP4.11□□□□□ -1.75
VPS28YPL065W NUP116Q02630 1113 aa4.11□□□□□ -1.75
VPS28YPL065W ASA1Q06822 443 aa4.11□□□□□ -1.75
VPS28YPL065W TFB5Q3E7C1 72 aaPredicted RBP4.11□□□□□ -1.75
VPS28YPL065W SSC1P0CS90 654 aaKnown RBP4.1□□□□□ -1.75
VPS28YPL065W SCH9P11792 824 aaKnown RBP4.1□□□□□ -1.75
VPS28YPL065W PHA2P32452 334 aa4.1□□□□□ -1.75
VPS28YPL065W KAR9P32526 644 aa4.1□□□□□ -1.75
VPS28YPL065W YGR117CP53270 476 aa4.1□□□□□ -1.75
VPS28YPL065W COS1P53822 381 aa4.1□□□□□ -1.75
VPS28YPL065W SPR6Q01684 191 aa4.1□□□□□ -1.75
VPS28YPL065W PRP3Q03338 469 aaPredicted RBP4.1□□□□□ -1.75
VPS28YPL065W YDR286CQ05530 114 aa4.1□□□□□ -1.75
VPS28YPL065W SRN2Q99176 213 aa4.1□□□□□ -1.75
VPS28YPL065W POM152P39685 1337 aa4.1□□□□□ -1.75
VPS28YPL065W TPK3P05986 398 aa4.09□□□□□ -1.75
VPS28YPL065W PHO84P25297 587 aaKnown RBP4.09□□□□□ -1.75
VPS28YPL065W FAA1P30624 700 aaKnown RBP4.09□□□□□ -1.75
VPS28YPL065W DOA1P36037 715 aa4.09□□□□□ -1.75
VPS28YPL065W SIF2P38262 535 aa4.09□□□□□ -1.75
VPS28YPL065W CAJ1P39101 391 aa4.09□□□□□ -1.75
VPS28YPL065W YIL029CP40538 142 aa4.09□□□□□ -1.75
VPS28YPL065W REE1P40893 198 aa4.09□□□□□ -1.75
VPS28YPL065W HRI1Q05905 244 aaKnown RBP4.09□□□□□ -1.75
VPS28YPL065W NOP6Q07623 225 aaKnown RBP4.09□□□□□ -1.75
VPS28YPL065W AHC1Q12433 566 aa4.09□□□□□ -1.75
VPS28YPL065W ARF1P11076 181 aaKnown RBP4.08□□□□□ -1.76
VPS28YPL065W DAL2P25335 343 aa4.08□□□□□ -1.76
VPS28YPL065W POP5P28005 173 aa4.08□□□□□ -1.76
Retrieved 100 of 5,963 RNA–protein pairs in 17.1 ms