RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeastyeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS1YKR001C PRX1P34227 261 aaKnown RBP5.24□□□□□ -1.57
VPS1YKR001C YCR087C-AP37263 153 aa5.24□□□□□ -1.57
VPS1YKR001C YBR284WP38150 797 aa5.24□□□□□ -1.57
VPS1YKR001C PRE3P38624 215 aa5.24□□□□□ -1.57
VPS1YKR001C MUP3P38734 546 aa5.24□□□□□ -1.57
VPS1YKR001C FAD1P38913 306 aa5.24□□□□□ -1.57
VPS1YKR001C HRB1P38922 454 aaKnown RBP RIP-Chip data5.24□□□□□ -1.57not detected
VPS1YKR001C SSP120P39931 234 aaKnown RBP5.24□□□□□ -1.57
VPS1YKR001C DPH1P40487 425 aaKnown RBP5.24□□□□□ -1.57
VPS1YKR001C CFD1P40558 293 aa5.24□□□□□ -1.57
VPS1YKR001C MIC19P43594 170 aa5.24□□□□□ -1.57
VPS1YKR001C LSB3P43603 459 aaKnown RBP5.24□□□□□ -1.57
VPS1YKR001C GPI1P53306 609 aa5.24□□□□□ -1.57
VPS1YKR001C TIM44Q01852 431 aa5.24□□□□□ -1.57
VPS1YKR001C DLT1Q04216 342 aa5.24□□□□□ -1.57
VPS1YKR001C YOL075CQ08234 1294 aa5.24□□□□□ -1.57
VPS1YKR001C YLR053CQ12026 108 aa5.24□□□□□ -1.57
VPS1YKR001C CWC2Q12046 339 aaPredicted RBP5.24□□□□□ -1.57
VPS1YKR001C RRP42Q12277 265 aaPredicted RBP5.24□□□□□ -1.57
VPS1YKR001C ATG31Q12421 196 aa5.24□□□□□ -1.57
VPS1YKR001C SNF8Q12483 233 aa5.24□□□□□ -1.57
VPS1YKR001C CCP1P00431 361 aa5.24□□□□□ -1.57
VPS1YKR001C QCR2P07257 368 aa5.24□□□□□ -1.57
VPS1YKR001C GBP2P25555 427 aaKnown RBP RIP-Chip data5.24□□□□□ -1.57not detected
VPS1YKR001C PRP21P32524 280 aaPredicted RBP5.24□□□□□ -1.57
VPS1YKR001C OAR1P35731 278 aa5.24□□□□□ -1.57
VPS1YKR001C FET3P38993 636 aa5.24□□□□□ -1.57
VPS1YKR001C CCT2P39076 527 aaKnown RBP5.24□□□□□ -1.57
VPS1YKR001C RMD6P39975 231 aa5.24□□□□□ -1.57
VPS1YKR001C VRG4P40107 337 aa5.24□□□□□ -1.57
VPS1YKR001C PRM2P40534 656 aa5.24□□□□□ -1.57
VPS1YKR001C YKE4P40544 346 aa5.24□□□□□ -1.57
VPS1YKR001C CIN1P40987 1014 aa5.24□□□□□ -1.57
VPS1YKR001C REF2P42073 533 aaPredicted RBP5.24□□□□□ -1.57
VPS1YKR001C PHO86P46956 311 aa5.24□□□□□ -1.57
VPS1YKR001C SPC98P53540 846 aa5.24□□□□□ -1.57
VPS1YKR001C NUP116Q02630 1113 aa5.24□□□□□ -1.57
VPS1YKR001C PUF2Q12221 1075 aaKnown RBP RIP-Chip data5.24□□□□□ -1.57not detected
VPS1YKR001C YOP1Q12402 180 aa5.24□□□□□ -1.57
VPS1YKR001C TRP4P07285 380 aaPredicted RBP5.23□□□□□ -1.57
VPS1YKR001C EST1P17214 699 aaPredicted RBP5.23□□□□□ -1.57
VPS1YKR001C PEX3P28795 441 aa5.23□□□□□ -1.57
VPS1YKR001C HBS1P32769 611 aaKnown RBP5.23□□□□□ -1.57
VPS1YKR001C UTP30P36144 274 aaKnown RBP5.23□□□□□ -1.57
VPS1YKR001C AGP2P38090 596 aa5.23□□□□□ -1.57
VPS1YKR001C SFB3P38810 929 aa5.23□□□□□ -1.57
VPS1YKR001C SAH1P39954 449 aaKnown RBP5.23□□□□□ -1.57
VPS1YKR001C RFC4P40339 323 aaKnown RBP5.23□□□□□ -1.57
VPS1YKR001C PRM10P42946 383 aa5.23□□□□□ -1.57
VPS1YKR001C QRI7P43122 407 aa5.23□□□□□ -1.57
VPS1YKR001C BIO3P50277 480 aa5.23□□□□□ -1.57
VPS1YKR001C DRN1P53255 507 aaKnown RBP5.23□□□□□ -1.57
VPS1YKR001C YNL040WP53960 456 aaPredicted RBP5.23□□□□□ -1.57
VPS1YKR001C SAE3P89114 91 aa5.23□□□□□ -1.57
VPS1YKR001C MTD1Q02046 320 aaKnown RBP5.23□□□□□ -1.57
VPS1YKR001C YDR222WQ04925 415 aa5.23□□□□□ -1.57
VPS1YKR001C YLR283WQ05867 314 aa5.23□□□□□ -1.57
VPS1YKR001C ADY4Q05955 493 aa5.23□□□□□ -1.57
VPS1YKR001C CDA1Q06702 301 aa5.23□□□□□ -1.57
VPS1YKR001C FEX1Q08913 375 aa5.23□□□□□ -1.57
VPS1YKR001C RTN2Q12443 393 aa5.23□□□□□ -1.57
VPS1YKR001C YHR213W-AQ8TGT4 77 aa5.23□□□□□ -1.57
VPS1YKR001C COX6P00427 148 aa5.23□□□□□ -1.57
VPS1YKR001C ERG20P08524 352 aaKnown RBP5.23□□□□□ -1.57
VPS1YKR001C PET54P10834 293 aa5.23□□□□□ -1.57
VPS1YKR001C PEP5P12868 1029 aa5.23□□□□□ -1.57
VPS1YKR001C ARO3P14843 370 aaKnown RBP5.23□□□□□ -1.57
VPS1YKR001C SRV2P17555 526 aaKnown RBP5.23□□□□□ -1.57
VPS1YKR001C RFA1P22336 621 aaKnown RBP5.23□□□□□ -1.57
VPS1YKR001C SPO11P23179 398 aa5.23□□□□□ -1.57
VPS1YKR001C YCK2P23292 546 aaKnown RBP5.23□□□□□ -1.57
VPS1YKR001C MGR1P25573 417 aa5.23□□□□□ -1.57
VPS1YKR001C CTS1P29029 562 aa5.23□□□□□ -1.57
VPS1YKR001C ECM8P38246 354 aa5.23□□□□□ -1.57
VPS1YKR001C SHG1P38337 142 aa5.23□□□□□ -1.57
VPS1YKR001C HXT13P39924 564 aa5.23□□□□□ -1.57
VPS1YKR001C RPS26AP39938 119 aaKnown RBP5.23□□□□□ -1.57
VPS1YKR001C RPS26BP39939 119 aaKnown RBP5.23□□□□□ -1.57
VPS1YKR001C PIC2P40035 300 aa5.23□□□□□ -1.57
VPS1YKR001C MGS1P40151 587 aa5.23□□□□□ -1.57
VPS1YKR001C YGR210CP42942 411 aa5.23□□□□□ -1.57
VPS1YKR001C ARC1P46672 376 aaKnown RBP5.23□□□□□ -1.57
VPS1YKR001C SNG1P46950 547 aa5.23□□□□□ -1.57
VPS1YKR001C APT1P49435 187 aaKnown RBP5.23□□□□□ -1.57
VPS1YKR001C ACS2P52910 683 aaKnown RBP5.23□□□□□ -1.57
VPS1YKR001C TAF6P53040 516 aa5.23□□□□□ -1.57
VPS1YKR001C OGG1P53397 376 aaPredicted RBP5.23□□□□□ -1.57
VPS1YKR001C YNR062CP53748 327 aa5.23□□□□□ -1.57
VPS1YKR001C GIS1Q03833 894 aa5.23□□□□□ -1.57
VPS1YKR001C CTS2Q06350 511 aa5.23□□□□□ -1.57
VPS1YKR001C YLR036CQ07986 203 aa5.23□□□□□ -1.57
VPS1YKR001C LYS21Q12122 440 aaKnown RBP5.23□□□□□ -1.57
VPS1YKR001C YOR114WQ12219 294 aa5.23□□□□□ -1.57
VPS1YKR001C YOR214CQ12282 236 aa5.23□□□□□ -1.57
VPS1YKR001C RIB2Q12362 591 aaKnown RBP5.23□□□□□ -1.57
VPS1YKR001C AFI1Q99222 893 aa5.23□□□□□ -1.57
VPS1YKR001C AI3P03877 415 aa5.22□□□□□ -1.57
VPS1YKR001C GAL80P04387 435 aa5.22□□□□□ -1.57
VPS1YKR001C SWI5P08153 709 aa5.22□□□□□ -1.57
VPS1YKR001C TUB3P09734 445 aaKnown RBP5.22□□□□□ -1.57
Retrieved 100 of 5,963 RNA–protein pairs in 11.4 ms