RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP42	YDR235W	YGK3	Q12222	375 aa	Predicted RBP	0.62	□□□□□ -2.31
PRP42	YDR235W	TPT1	Q12272	230 aa	Known RBP	0.62	□□□□□ -2.31
PRP42	YDR235W	SNU66	Q12420	587 aa	Predicted RBP	0.62	□□□□□ -2.31
PRP42	YDR235W	TY1B-A	O13527	1196 aa	Known RBP	0.61	□□□□□ -2.31
PRP42	YDR235W	IMA3	P0CW40	589 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	IMA4	P0CW41	589 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	URA4	P20051	364 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	GEX1	P25596	615 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	YCR051W	P25631	222 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	CDC50	P25656	391 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	BRF1	P29056	596 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	ERG3	P32353	365 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	PHA2	P32452	334 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	TFB1	P32776	642 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	ATP3	P38077	311 aa	Known RBP	0.61	□□□□□ -2.31
PRP42	YDR235W	OM14	P38325	134 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	MAM33	P40513	266 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	EGT2	P42835	1041 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	YFL012W	P43580	148 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	LCB3	P47013	409 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	YIP5	P53108	310 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	MST27	P53176	234 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	ALF1	P53904	254 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	OCA2	P53949	197 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	KAP120	Q02932	1032 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	YMR155W	Q03795	547 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	YET2	Q04210	160 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	YMR130W	Q04223	302 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	DON1	Q05610	365 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	YLR287C	Q05881	355 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	RRP9	Q06506	573 aa	Known RBP	0.61	□□□□□ -2.31
PRP42	YDR235W	MDM36	Q06820	579 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	SMC5	Q08204	1093 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	IMA2	Q08295	589 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	ATG34	Q12292	412 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	NCA2	Q12374	616 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	EAF3	Q12432	401 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	YRF1-4	O13559	1382 aa		0.61	□□□□□ -2.31
PRP42	YDR235W	PIS1	P06197	220 aa	Known RBP	0.6	□□□□□ -2.31
PRP42	YDR235W	CAP2	P13517	287 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	FUR1	P18562	216 aa	Known RBP	0.6	□□□□□ -2.31
PRP42	YDR235W	RPB5	P20434	215 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	EXG1	P23776	448 aa	Known RBP	0.6	□□□□□ -2.31
PRP42	YDR235W	DPH5	P32469	300 aa	Predicted RBP	0.6	□□□□□ -2.31
PRP42	YDR235W	RPN12	P32496	274 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	MRPL27	P36526	146 aa	Predicted RBP	0.6	□□□□□ -2.31
PRP42	YDR235W	GPI18	P38211	433 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	PFF1	P38244	976 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	YHK8	P38776	514 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	NOC2	P39744	710 aa	Known RBP	0.6	□□□□□ -2.31
PRP42	YDR235W	YER184C	P39961	794 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	YER079W	P40052	210 aa	Known RBP	0.6	□□□□□ -2.31
PRP42	YDR235W	YNL208W	P40159	199 aa	Known RBP	0.6	□□□□□ -2.31
PRP42	YDR235W	ATG18	P43601	500 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	TOS3	P43637	560 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	BNS1	P50084	137 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	KTR6	P54070	446 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	STD1	Q02794	444 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	YMR102C	Q03177	834 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	MMT1	Q03218	510 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	TDA1	Q03533	586 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	URH1	Q04179	340 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	ROY1	Q04847	553 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	SNT309	Q06091	175 aa	Predicted RBP	0.6	□□□□□ -2.31
PRP42	YDR235W	DCS1	Q06151	350 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	CMS1	Q07897	291 aa	Known RBP	0.6	□□□□□ -2.31
PRP42	YDR235W	LOT6	Q07923	191 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	VPS54	Q12071	889 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	RRG1	Q12167	365 aa	Predicted RBP	0.6	□□□□□ -2.31
PRP42	YDR235W	SFI1	Q12369	946 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	FOL3	Q12676	427 aa	Predicted RBP	0.6	□□□□□ -2.31
PRP42	YDR235W	PGA3	Q12746	312 aa	Known RBP	0.6	□□□□□ -2.31
PRP42	YDR235W	NAG1	Q8TGN9	163 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	AFI1	Q99222	893 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	ADE4	P04046	510 aa	Known RBP	0.6	□□□□□ -2.31
PRP42	YDR235W	CDC31	P06704	161 aa	Known RBP	0.6	□□□□□ -2.31
PRP42	YDR235W	ATP1	P07251	545 aa	Known RBP	0.6	□□□□□ -2.31
PRP42	YDR235W	DST1	P07273	309 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	ZUO1	P32527	433 aa	Known RBP	0.6	□□□□□ -2.31
PRP42	YDR235W	COX13	P32799	129 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	CYM1	P32898	989 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	ANR2	P36090	516 aa	Predicted RBP	0.6	□□□□□ -2.31
PRP42	YDR235W	HEL1	P36113	551 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	STP2	P38704	541 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	PFS1	P38872	237 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	PTI1	P39927	425 aa	Predicted RBP	0.6	□□□□□ -2.31
PRP42	YDR235W	IGD1	P43598	195 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	RRP46	P53256	223 aa	Predicted RBP	0.6	□□□□□ -2.31
PRP42	YDR235W	CLD1	P53264	445 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	SPR6	Q01684	191 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	MDM1	Q01846	1127 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	HOT1	Q03213	719 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	ACL4	Q03771	387 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	MFG1	Q07684	458 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	YDR061W	Q12298	539 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	CEX1	Q12453	761 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	HTZ1	Q12692	134 aa	Known RBP	0.6	□□□□□ -2.31
PRP42	YDR235W	YCR024C-B	Q3E7Z8	88 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	MTR10	Q99189	972 aa		0.6	□□□□□ -2.31
PRP42	YDR235W	ISN1	Q99312	450 aa		0.6	□□□□□ -2.31

Retrieved 100 of 5,963 RNA–protein pairs in 132 ms