RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C CLD1P53264 445 aa1.57□□□□□ -2.16
PCF11YDR228C SKO1Q02100 647 aa1.57□□□□□ -2.16
PCF11YDR228C SKI8Q02793 397 aaPredicted RBP1.57□□□□□ -2.16
PCF11YDR228C RTN2Q12443 393 aa1.57□□□□□ -2.16
PCF11YDR228C COX3P00420 269 aa1.56□□□□□ -2.16
PCF11YDR228C ADE4P04046 510 aaKnown RBP1.56□□□□□ -2.16
PCF11YDR228C IMA3P0CW40 589 aa1.56□□□□□ -2.16
PCF11YDR228C IMA4P0CW41 589 aa1.56□□□□□ -2.16
PCF11YDR228C ZRC1P20107 442 aa1.56□□□□□ -2.16
PCF11YDR228C NTC20P38302 140 aaPredicted RBP1.56□□□□□ -2.16
PCF11YDR228C PFS2P42841 465 aaKnown RBP1.56□□□□□ -2.16
PCF11YDR228C YGL262WP53054 175 aa1.56□□□□□ -2.16
PCF11YDR228C YGL138CP53122 345 aa1.56□□□□□ -2.16
PCF11YDR228C ARX1Q03862 593 aaKnown RBP1.56□□□□□ -2.16
PCF11YDR228C TAF11Q04226 346 aa1.56□□□□□ -2.16
PCF11YDR228C LOT6Q07923 191 aa1.56□□□□□ -2.16
PCF11YDR228C IMA2Q08295 589 aa1.56□□□□□ -2.16
PCF11YDR228C TFB1P32776 642 aa1.56□□□□□ -2.16
PCF11YDR228C MAM33P40513 266 aa1.56□□□□□ -2.16
PCF11YDR228C HAC1P41546 238 aa1.56□□□□□ -2.16
PCF11YDR228C TOS3P43637 560 aa1.56□□□□□ -2.16
PCF11YDR228C YGR250CP53316 781 aaKnown RBP1.56□□□□□ -2.16
PCF11YDR228C COG4Q06096 861 aa1.56□□□□□ -2.16
PCF11YDR228C TPI1P00942 248 aaKnown RBP1.55□□□□□ -2.16
PCF11YDR228C YIP5P53108 310 aa1.55□□□□□ -2.16
PCF11YDR228C MRPL19P53875 158 aa1.55□□□□□ -2.16
PCF11YDR228C EAF3Q12432 401 aa1.55□□□□□ -2.16
PCF11YDR228C CLB3P24870 427 aa1.54□□□□□ -2.16
PCF11YDR228C DEP1P31385 405 aa1.54□□□□□ -2.16
PCF11YDR228C ZUO1P32527 433 aaKnown RBP1.54□□□□□ -2.16
PCF11YDR228C FMT1P32785 401 aa1.54□□□□□ -2.16
PCF11YDR228C CYM1P32898 989 aa1.54□□□□□ -2.16
PCF11YDR228C YBR056WP38081 501 aa1.54□□□□□ -2.16
PCF11YDR228C CHL4P38907 458 aa1.54□□□□□ -2.16
PCF11YDR228C VHT1P53241 593 aa1.54□□□□□ -2.16
PCF11YDR228C HST1P53685 503 aa1.54□□□□□ -2.16
PCF11YDR228C STD1Q02794 444 aa1.54□□□□□ -2.16
PCF11YDR228C KAP120Q02932 1032 aa1.54□□□□□ -2.16
PCF11YDR228C RPN9Q04062 393 aaKnown RBP1.54□□□□□ -2.16
PCF11YDR228C YDL114WQ07530 308 aa1.54□□□□□ -2.16
PCF11YDR228C NCA2Q12374 616 aa1.54□□□□□ -2.16
PCF11YDR228C FOL3Q12676 427 aaPredicted RBP1.54□□□□□ -2.16
PCF11YDR228C PIS1P06197 220 aaKnown RBP1.54□□□□□ -2.16
PCF11YDR228C PFF1P38244 976 aa1.54□□□□□ -2.16
PCF11YDR228C SEC9P40357 651 aa1.54□□□□□ -2.16
PCF11YDR228C IGD1P43598 195 aa1.54□□□□□ -2.16
PCF11YDR228C TOM22P49334 152 aa1.54□□□□□ -2.16
PCF11YDR228C KTR6P54070 446 aa1.54□□□□□ -2.16
PCF11YDR228C MMT1Q03218 510 aa1.54□□□□□ -2.16
PCF11YDR228C YDL121CQ07541 149 aa1.54□□□□□ -2.16
PCF11YDR228C DIS3Q08162 1001 aaKnown RBP1.54□□□□□ -2.16
PCF11YDR228C CEX1Q12453 761 aa1.54□□□□□ -2.16
PCF11YDR228C FUN26P31381 517 aa1.53□□□□□ -2.16
PCF11YDR228C YEF1P32622 495 aa1.53□□□□□ -2.16
PCF11YDR228C ATP3P38077 311 aaKnown RBP1.53□□□□□ -2.16
PCF11YDR228C STP2P38704 541 aa1.53□□□□□ -2.16
PCF11YDR228C YFL012WP43580 148 aa1.53□□□□□ -2.16
PCF11YDR228C PRM6Q04705 352 aa1.53□□□□□ -2.16
PCF11YDR228C DON1Q05610 365 aa1.53□□□□□ -2.16
PCF11YDR228C TY1B-AO13527 1196 aaKnown RBP1.52□□□□□ -2.17
PCF11YDR228C TPS2P31688 896 aaKnown RBP1.52□□□□□ -2.17
PCF11YDR228C IME2P32581 645 aa1.52□□□□□ -2.17
PCF11YDR228C MMS4P38257 691 aa1.52□□□□□ -2.17
PCF11YDR228C YNL208WP40159 199 aaKnown RBP1.52□□□□□ -2.17
PCF11YDR228C GAT2P40209 560 aa1.52□□□□□ -2.17
PCF11YDR228C KEG1P43614 200 aa1.52□□□□□ -2.17
PCF11YDR228C RPT4P53549 437 aaKnown RBP1.52□□□□□ -2.17
PCF11YDR228C HOT1Q03213 719 aa1.52□□□□□ -2.17
PCF11YDR228C MCT1Q12283 360 aa1.52□□□□□ -2.17
PCF11YDR228C HOM3P10869 527 aa1.52□□□□□ -2.17
PCF11YDR228C MAS2P11914 482 aa1.52□□□□□ -2.17
PCF11YDR228C RED1P14291 827 aa1.52□□□□□ -2.17
PCF11YDR228C RCK2P38623 610 aa1.52□□□□□ -2.17
PCF11YDR228C WSS1P38838 269 aa1.52□□□□□ -2.17
PCF11YDR228C YGR067CP53243 804 aa1.52□□□□□ -2.17
PCF11YDR228C ACL4Q03771 387 aa1.52□□□□□ -2.17
PCF11YDR228C DCS1Q06151 350 aa1.52□□□□□ -2.17
PCF11YDR228C FCY22Q12119 530 aa1.52□□□□□ -2.17
PCF11YDR228C YCR024C-BQ3E7Z8 88 aa1.52□□□□□ -2.17
PCF11YDR228C PAB1P04147 577 aaKnown RBP RIP-Chip data1.51□□□□□ -2.17not detected
PCF11YDR228C SSC1P0CS90 654 aaKnown RBP1.51□□□□□ -2.17
PCF11YDR228C COX13P32799 129 aa1.51□□□□□ -2.17
PCF11YDR228C PRY2P36110 329 aa1.51□□□□□ -2.17
PCF11YDR228C PFS1P38872 237 aa1.51□□□□□ -2.17
PCF11YDR228C OCA2P53949 197 aa1.51□□□□□ -2.17
PCF11YDR228C RPL21AQ02753 160 aaKnown RBP1.51□□□□□ -2.17
PCF11YDR228C PRP42Q03776 544 aaKnown RBP1.51□□□□□ -2.17
PCF11YDR228C SLF1Q12034 447 aaKnown RBP1.51□□□□□ -2.17
PCF11YDR228C RPL21BQ12672 160 aaKnown RBP1.51□□□□□ -2.17
PCF11YDR228C ARO3P14843 370 aaKnown RBP1.5□□□□□ -2.17
PCF11YDR228C ALG1P16661 449 aa1.5□□□□□ -2.17
PCF11YDR228C SRV2P17555 526 aaKnown RBP1.5□□□□□ -2.17
PCF11YDR228C URA4P20051 364 aa1.5□□□□□ -2.17
PCF11YDR228C BRF1P29056 596 aa1.5□□□□□ -2.17
PCF11YDR228C NFU1P32860 256 aa1.5□□□□□ -2.17
PCF11YDR228C ASC1P38011 319 aaKnown RBP1.5□□□□□ -2.17
PCF11YDR228C LSM5P40089 93 aaKnown RBP1.5□□□□□ -2.17
PCF11YDR228C SEH1P53011 349 aaKnown RBP1.5□□□□□ -2.17
PCF11YDR228C YPL107WQ02873 248 aa1.5□□□□□ -2.17
PCF11YDR228C YMR130WQ04223 302 aa1.5□□□□□ -2.17
Retrieved 100 of 5,963 RNA–protein pairs in 36.3 ms