RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W GTO1P48239 356 aa3.15□□□□□ -1.91
USE1YGL098W LYS20P48570 428 aaKnown RBP3.15□□□□□ -1.91
USE1YGL098W AZR1P50080 613 aa3.15□□□□□ -1.91
USE1YGL098W DIA3P52290 468 aa3.15□□□□□ -1.91
USE1YGL098W SEH1P53011 349 aaKnown RBP3.15□□□□□ -1.91
USE1YGL098W GUP1P53154 560 aa3.15□□□□□ -1.91
USE1YGL098W SWC4P53201 476 aa3.15□□□□□ -1.91
USE1YGL098W YNR029CP53729 429 aaKnown RBP3.15□□□□□ -1.91
USE1YGL098W HCH1P53834 153 aa3.15□□□□□ -1.91
USE1YGL098W RPL34AP87262 121 aaPredicted RBP3.15□□□□□ -1.91
USE1YGL098W STP1Q00947 519 aa3.15□□□□□ -1.91
USE1YGL098W ELP3Q02908 557 aaKnown RBP3.15□□□□□ -1.91
USE1YGL098W MAK3Q03503 176 aa3.15□□□□□ -1.91
USE1YGL098W YMR209CQ03648 457 aa3.15□□□□□ -1.91
USE1YGL098W YMD8Q03697 442 aa3.15□□□□□ -1.91
USE1YGL098W YDR387CQ04162 555 aa3.15□□□□□ -1.91
USE1YGL098W YDR222WQ04925 415 aa3.15□□□□□ -1.91
USE1YGL098W YFT2Q06676 274 aa3.15□□□□□ -1.91
USE1YGL098W INP54Q08227 384 aaKnown RBP3.15□□□□□ -1.91
USE1YGL098W UAF30Q08747 228 aa3.15□□□□□ -1.91
USE1YGL098W DIN7Q12086 430 aa3.15□□□□□ -1.91
USE1YGL098W SPC3Q12133 184 aa3.15□□□□□ -1.91
USE1YGL098W LCB4Q12246 624 aa3.15□□□□□ -1.91
USE1YGL098W FYV7Q12247 151 aa3.15□□□□□ -1.91
USE1YGL098W YLR046CQ12253 270 aa3.15□□□□□ -1.91
USE1YGL098W SVS1Q12254 260 aa3.15□□□□□ -1.91
USE1YGL098W YLR108CQ12259 485 aa3.15□□□□□ -1.91
USE1YGL098W PFK27Q12471 397 aaPredicted RBP3.15□□□□□ -1.91
USE1YGL098W SUS1Q6WNK7 96 aa3.15□□□□□ -1.91
USE1YGL098W MTR10Q99189 972 aa3.15□□□□□ -1.91
USE1YGL098W RIB3Q99258 208 aa3.15□□□□□ -1.91
USE1YGL098W ISN1Q99312 450 aa3.15□□□□□ -1.91
USE1YGL098W TY1B-NL2Q99337 1749 aaKnown RBP3.14□□□□□ -1.91
USE1YGL098W BI4P03879 638 aa3.14□□□□□ -1.91
USE1YGL098W ATP4P05626 244 aa3.14□□□□□ -1.91
USE1YGL098W SPT3P06844 337 aa3.14□□□□□ -1.91
USE1YGL098W CAR2P07991 424 aaKnown RBP3.14□□□□□ -1.91
USE1YGL098W SPS2P08459 502 aa3.14□□□□□ -1.91
USE1YGL098W SPS4P09937 338 aa3.14□□□□□ -1.91
USE1YGL098W YEL076C-AP0CX16 216 aa3.14□□□□□ -1.91
USE1YGL098W YLR464WP0CX17 216 aa3.14□□□□□ -1.91
USE1YGL098W MRP1P10662 321 aaKnown RBP3.14□□□□□ -1.91
USE1YGL098W TCP1P12612 559 aaKnown RBP3.14□□□□□ -1.91
USE1YGL098W IFM1P25038 676 aa3.14□□□□□ -1.91
USE1YGL098W CDC50P25656 391 aa3.14□□□□□ -1.91
USE1YGL098W ATP11P32453 318 aa3.14□□□□□ -1.91
USE1YGL098W DPH2P32461 534 aa3.14□□□□□ -1.91
USE1YGL098W MRPL6P32904 214 aa3.14□□□□□ -1.91
USE1YGL098W SER1P33330 395 aaKnown RBP3.14□□□□□ -1.91
USE1YGL098W SEF1P34228 1148 aa3.14□□□□□ -1.91
USE1YGL098W ZRT3P34240 503 aa3.14□□□□□ -1.91
USE1YGL098W SCD5P34758 872 aa3.14□□□□□ -1.91
USE1YGL098W SSS1P35179 80 aa3.14□□□□□ -1.91
USE1YGL098W PTC1P35182 281 aa3.14□□□□□ -1.91
USE1YGL098W TFA2P36145 328 aa3.14□□□□□ -1.91
USE1YGL098W SCO2P38072 301 aa3.14□□□□□ -1.91
USE1YGL098W CHK1P38147 527 aa3.14□□□□□ -1.91
USE1YGL098W APN2P38207 520 aa3.14□□□□□ -1.91
USE1YGL098W MMS4P38257 691 aa3.14□□□□□ -1.91
USE1YGL098W BMT2P38278 337 aa3.14□□□□□ -1.91
USE1YGL098W TOS1P38288 455 aa3.14□□□□□ -1.91
USE1YGL098W APM2P38700 605 aa3.14□□□□□ -1.91
USE1YGL098W NVJ1P38881 321 aa3.14□□□□□ -1.91
USE1YGL098W UIP3P39547 235 aa3.14□□□□□ -1.91
USE1YGL098W YAR028WP39548 234 aa3.14□□□□□ -1.91
USE1YGL098W YEL076CP39971 216 aa3.14□□□□□ -1.91
USE1YGL098W GIM4P40005 111 aaKnown RBP3.14□□□□□ -1.91
USE1YGL098W YER010CP40011 234 aa3.14□□□□□ -1.91
USE1YGL098W RPN3P40016 523 aaKnown RBP3.14□□□□□ -1.91
USE1YGL098W PCL6P40038 420 aa3.14□□□□□ -1.91
USE1YGL098W ARG2P40360 574 aa3.14□□□□□ -1.91
USE1YGL098W MAD2P40958 196 aa3.14□□□□□ -1.91
USE1YGL098W SSY5P47002 699 aa3.14□□□□□ -1.91
USE1YGL098W YJL045WP47052 634 aa3.14□□□□□ -1.91
USE1YGL098W SNN1P48232 102 aa3.14□□□□□ -1.91
USE1YGL098W PUS4P48567 403 aaKnown RBP3.14□□□□□ -1.91
USE1YGL098W COS12P53053 380 aa3.14□□□□□ -1.91
USE1YGL098W YGR168CP53293 376 aa3.14□□□□□ -1.91
USE1YGL098W MRPL22P53881 309 aa3.14□□□□□ -1.91
USE1YGL098W LSM7P53905 115 aaKnown RBP3.14□□□□□ -1.91
USE1YGL098W OCA2P53949 197 aa3.14□□□□□ -1.91
USE1YGL098W SLM2P53955 656 aa3.14□□□□□ -1.91
USE1YGL098W IDP3P53982 420 aaKnown RBP3.14□□□□□ -1.91
USE1YGL098W ARP4P80428 489 aa3.14□□□□□ -1.91
USE1YGL098W YPL108WQ02872 168 aaPredicted RBP3.14□□□□□ -1.91
USE1YGL098W YPL113CQ02961 396 aa3.14□□□□□ -1.91
USE1YGL098W MRPS17Q03246 237 aaPredicted RBP3.14□□□□□ -1.91
USE1YGL098W SLD5Q03406 294 aa3.14□□□□□ -1.91
USE1YGL098W BUL2Q03758 920 aaKnown RBP3.14□□□□□ -1.91
USE1YGL098W CDA2Q06703 312 aa3.14□□□□□ -1.91
USE1YGL098W ESA1Q08649 445 aa3.14□□□□□ -1.91
USE1YGL098W MRN1Q08925 612 aaKnown RBP RIP-Chip data3.14□□□□□ -1.91not detected
USE1YGL098W DDC1Q08949 612 aa3.14□□□□□ -1.91
USE1YGL098W YPL272CQ08984 517 aa3.14□□□□□ -1.91
USE1YGL098W PSF3Q12146 194 aa3.14□□□□□ -1.91
USE1YGL098W YOR114WQ12219 294 aa3.14□□□□□ -1.91
USE1YGL098W YGK3Q12222 375 aaPredicted RBP3.14□□□□□ -1.91
USE1YGL098W PST2Q12335 198 aaKnown RBP3.14□□□□□ -1.91
USE1YGL098W PNS1Q12412 539 aa3.14□□□□□ -1.91
USE1YGL098W RTN2Q12443 393 aa3.14□□□□□ -1.91
Retrieved 100 of 5,963 RNA–protein pairs in 17.8 ms