RNA–Protein interactions for RNA: YDR299W

BFR2, Transcript of Component of the SSU and 90S preribosomes, yeast

Gene BFR2, Length 1,605 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BFR2	YDR299W	HIR2	P32480	875 aa		0.87	□□□□□ -2.27
BFR2	YDR299W	KAR9	P32526	644 aa		0.87	□□□□□ -2.27
BFR2	YDR299W	LTV1	P34078	463 aa		0.87	□□□□□ -2.27
BFR2	YDR299W	MID2	P36027	376 aa		0.87	□□□□□ -2.27
BFR2	YDR299W	BYE1	P36106	594 aa		0.87	□□□□□ -2.27
BFR2	YDR299W	YBR056W	P38081	501 aa		0.87	□□□□□ -2.27
BFR2	YDR299W	RRP4	P38792	359 aa	Known RBP	0.87	□□□□□ -2.27
BFR2	YDR299W	YMR147W	P40218	223 aa	Known RBP	0.87	□□□□□ -2.27
BFR2	YDR299W	PAN6	P40459	309 aa		0.87	□□□□□ -2.27
BFR2	YDR299W	DFG10	P40526	253 aa		0.87	□□□□□ -2.27
BFR2	YDR299W	YIL029C	P40538	142 aa		0.87	□□□□□ -2.27
BFR2	YDR299W	SAS2	P40963	338 aa		0.87	□□□□□ -2.27
BFR2	YDR299W	OST1	P41543	476 aa	Known RBP	0.87	□□□□□ -2.27
BFR2	YDR299W	VMA13	P41807	478 aa	Known RBP	0.87	□□□□□ -2.27
BFR2	YDR299W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	0.87	□□□□□ -2.27	not detected
BFR2	YDR299W	NCA3	P46955	337 aa		0.87	□□□□□ -2.27
BFR2	YDR299W	MDE1	P47095	244 aa		0.87	□□□□□ -2.27
BFR2	YDR299W	RPT4	P53549	437 aa	Known RBP	0.87	□□□□□ -2.27
BFR2	YDR299W	FRE4	P53746	719 aa		0.87	□□□□□ -2.27
BFR2	YDR299W	YIF1	P53845	314 aa	Known RBP	0.87	□□□□□ -2.27
BFR2	YDR299W	CIK1	Q01649	594 aa		0.87	□□□□□ -2.27
BFR2	YDR299W	RMT2	Q03305	412 aa		0.87	□□□□□ -2.27
BFR2	YDR299W	PRP42	Q03776	544 aa	Known RBP	0.87	□□□□□ -2.27
BFR2	YDR299W	SXM1	Q04175	944 aa	Known RBP	0.87	□□□□□ -2.27
BFR2	YDR299W	URH1	Q04179	340 aa		0.87	□□□□□ -2.27
BFR2	YDR299W	BCH1	Q05029	724 aa		0.87	□□□□□ -2.27
BFR2	YDR299W	DCS1	Q06151	350 aa		0.87	□□□□□ -2.27
BFR2	YDR299W	RRP9	Q06506	573 aa	Known RBP	0.87	□□□□□ -2.27
BFR2	YDR299W	MRPL35	Q06678	367 aa		0.87	□□□□□ -2.27
BFR2	YDR299W	RAX1	Q08760	435 aa		0.87	□□□□□ -2.27
BFR2	YDR299W	SNX3	Q08826	162 aa	Known RBP	0.87	□□□□□ -2.27
BFR2	YDR299W	FDH1	Q08911	376 aa		0.87	□□□□□ -2.27
BFR2	YDR299W	SRL2	Q12020	392 aa		0.87	□□□□□ -2.27
BFR2	YDR299W	AEP3	Q12089	606 aa		0.87	□□□□□ -2.27
BFR2	YDR299W	RKM5	Q12367	367 aa		0.87	□□□□□ -2.27
BFR2	YDR299W	RMD5	Q12508	421 aa		0.87	□□□□□ -2.27
BFR2	YDR299W	ADE4	P04046	510 aa	Known RBP	0.86	□□□□□ -2.27
BFR2	YDR299W	PIS1	P06197	220 aa	Known RBP	0.86	□□□□□ -2.27
BFR2	YDR299W	NAM2	P11325	894 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	SEC63	P14906	663 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	PDX1	P16451	410 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	RAD5	P32849	1169 aa	Predicted RBP	0.86	□□□□□ -2.27
BFR2	YDR299W	SKT5	P34226	696 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	PXA2	P34230	853 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	PEX5	P35056	612 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	MRP21	P38175	177 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	YFR057W	P43625	151 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	PHO86	P46956	311 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	YML6	P51998	286 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	CLD1	P53264	445 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	CWC22	P53333	577 aa	Known RBP	0.86	□□□□□ -2.27
BFR2	YDR299W	GOR1	P53839	350 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	YMR010W	Q03687	405 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	ACL4	Q03771	387 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	MDM36	Q06820	579 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	NSE1	Q07913	336 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	SMC5	Q08204	1093 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	YPR022C	Q12139	1133 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	ORT1	Q12375	292 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	HMS1	Q12398	434 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	ISA2	Q12425	185 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	PGA3	Q12746	312 aa	Known RBP	0.86	□□□□□ -2.27
BFR2	YDR299W	TRP1	P00912	224 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	PAB1	P04147	577 aa	Known RBP RIP-Chip data	0.86	□□□□□ -2.27	not detected
BFR2	YDR299W	STE7	P06784	515 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	ATP1	P07251	545 aa	Known RBP	0.86	□□□□□ -2.27
BFR2	YDR299W	MSI1	P13712	422 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	MDH1	P17505	334 aa	Known RBP RIP-Chip data	0.86	□□□□□ -2.27	not detected
BFR2	YDR299W	SLY1	P22213	666 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	AAT2	P23542	418 aa	Known RBP	0.86	□□□□□ -2.27
BFR2	YDR299W	CLB1	P24868	471 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	YCL068C	P25593	260 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	GEX1	P25596	615 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	ADK2	P26364	225 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	CDC60	P26637	1090 aa	Known RBP	0.86	□□□□□ -2.27
BFR2	YDR299W	DEP1	P31385	405 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	CYS4	P32582	507 aa	Known RBP	0.86	□□□□□ -2.27
BFR2	YDR299W	COX13	P32799	129 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	SAS3	P34218	831 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	SOR1	P35497	357 aa	Known RBP	0.86	□□□□□ -2.27
BFR2	YDR299W	CHK1	P38147	527 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	YBL028C	P38202	106 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	SLM4	P38247	162 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	SRP72	P38688	640 aa	Known RBP	0.86	□□□□□ -2.27
BFR2	YDR299W	LSM12	P38828	187 aa	Known RBP	0.86	□□□□□ -2.27
BFR2	YDR299W	LSM5	P40089	93 aa	Known RBP	0.86	□□□□□ -2.27
BFR2	YDR299W	JLP2	P40206	208 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	GAT2	P40209	560 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	VHS2	P40463	436 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	YPS6	P40583	537 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	PAC11	P40960	533 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	HAC1	P41546	238 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	GAB1	P41733	394 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	GPD2	P41911	440 aa	Known RBP	0.86	□□□□□ -2.27
BFR2	YDR299W	AZR1	P50080	613 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	STD1	Q02794	444 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	OAZ1	Q02803	292 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	YDR541C	Q03049	344 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	YMR102C	Q03177	834 aa		0.86	□□□□□ -2.27
BFR2	YDR299W	ROY1	Q04847	553 aa		0.86	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 21.1 ms