RNA–Protein interactions for RNA: YDR007W

TRP1, Transcript of Phosphoribosylanthranilate isomerase, yeast

Gene TRP1, Length 675 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRP1	YDR007W	COR1	P07256	457 aa		5.74	□□□□□ -1.49
TRP1	YDR007W	PEP4	P07267	405 aa	Known RBP	5.74	□□□□□ -1.49
TRP1	YDR007W	TPM1	P17536	199 aa	Known RBP	5.74	□□□□□ -1.49
TRP1	YDR007W	COQ3	P27680	312 aa		5.74	□□□□□ -1.49
TRP1	YDR007W	YIM1	P28625	365 aa		5.74	□□□□□ -1.49
TRP1	YDR007W	AFG1	P32317	509 aa		5.74	□□□□□ -1.49
TRP1	YDR007W	YKL023W	P36103	277 aa	Known RBP	5.74	□□□□□ -1.49
TRP1	YDR007W	GVP36	P40531	326 aa	Known RBP	5.74	□□□□□ -1.49
TRP1	YDR007W	ULP2	P40537	1034 aa	Predicted RBP	5.74	□□□□□ -1.49
TRP1	YDR007W	COS5	P47187	383 aa		5.74	□□□□□ -1.49
TRP1	YDR007W	YGL242C	P53066	181 aa		5.74	□□□□□ -1.49
TRP1	YDR007W	COP1	P53622	1201 aa	Known RBP	5.74	□□□□□ -1.49
TRP1	YDR007W	HEF3	P53978	1044 aa	Known RBP	5.74	□□□□□ -1.49
TRP1	YDR007W	SKO1	Q02100	647 aa		5.74	□□□□□ -1.49
TRP1	YDR007W	FUS2	Q05670	677 aa		5.74	□□□□□ -1.49
TRP1	YDR007W	COS7	Q07788	383 aa		5.74	□□□□□ -1.49
TRP1	YDR007W	THP1	Q08231	455 aa		5.74	□□□□□ -1.49
TRP1	YDR007W	DNL4	Q08387	944 aa	Predicted RBP	5.74	□□□□□ -1.49
TRP1	YDR007W	DCI1	Q08558	271 aa		5.74	□□□□□ -1.49
TRP1	YDR007W	VPS54	Q12071	889 aa		5.74	□□□□□ -1.49
TRP1	YDR007W	NCE102	Q12207	173 aa	RIP-Chip data	5.74	□□□□□ -1.49	not detected
TRP1	YDR007W	RRI1	Q12468	440 aa		5.74	□□□□□ -1.49
TRP1	YDR007W	DDP1	Q99321	188 aa	Known RBP	5.74	□□□□□ -1.49
TRP1	YDR007W	TUB1	P09733	447 aa	Known RBP	5.73	□□□□□ -1.49
TRP1	YDR007W	CSE1	P33307	960 aa		5.73	□□□□□ -1.49
TRP1	YDR007W	COY1	P34237	679 aa		5.73	□□□□□ -1.49
TRP1	YDR007W	SLM4	P38247	162 aa		5.73	□□□□□ -1.49
TRP1	YDR007W	OSH3	P38713	996 aa	Known RBP	5.73	□□□□□ -1.49
TRP1	YDR007W	YHR054C	P38780	354 aa		5.73	□□□□□ -1.49
TRP1	YDR007W	VRG4	P40107	337 aa		5.73	□□□□□ -1.49
TRP1	YDR007W	EFM4	P40516	257 aa		5.73	□□□□□ -1.49
TRP1	YDR007W	HXT9	P40885	567 aa		5.73	□□□□□ -1.49
TRP1	YDR007W	YJR079W	P47126	109 aa		5.73	□□□□□ -1.49
TRP1	YDR007W	YGL108C	P53139	140 aa		5.73	□□□□□ -1.49
TRP1	YDR007W	SMM1	P53720	384 aa	Known RBP	5.73	□□□□□ -1.49
TRP1	YDR007W	HEL2	Q05580	639 aa	Known RBP	5.73	□□□□□ -1.49
TRP1	YDR007W	MCP2	Q06567	569 aa		5.73	□□□□□ -1.49
TRP1	YDR007W	RDR1	Q08904	546 aa		5.73	□□□□□ -1.49
TRP1	YDR007W	SGT2	Q12118	346 aa	Known RBP	5.73	□□□□□ -1.49
TRP1	YDR007W	HIP1	P06775	603 aa		5.72	□□□□□ -1.49
TRP1	YDR007W	RHO2	P06781	192 aa		5.72	□□□□□ -1.49
TRP1	YDR007W	PET494	P07390	489 aa	Predicted RBP	5.72	□□□□□ -1.49
TRP1	YDR007W	FRS2	P15625	503 aa	Known RBP	5.72	□□□□□ -1.49
TRP1	YDR007W	CNA1	P23287	553 aa		5.72	□□□□□ -1.49
TRP1	YDR007W	PRX1	P34227	261 aa	Known RBP	5.72	□□□□□ -1.49
TRP1	YDR007W	THI2	P38141	450 aa		5.72	□□□□□ -1.49
TRP1	YDR007W	YHR210C	P38893	341 aa		5.72	□□□□□ -1.49
TRP1	YDR007W	STB1	P42845	420 aa		5.72	□□□□□ -1.49
TRP1	YDR007W	LAM5	P43560	674 aa		5.72	□□□□□ -1.49
TRP1	YDR007W	NMD5	P46970	1048 aa		5.72	□□□□□ -1.49
TRP1	YDR007W	HOP2	P53187	214 aa		5.72	□□□□□ -1.49
TRP1	YDR007W	IDP3	P53982	420 aa	Known RBP	5.72	□□□□□ -1.49
TRP1	YDR007W	SHR3	Q02774	210 aa		5.72	□□□□□ -1.49
TRP1	YDR007W	PLP1	Q04004	230 aa		5.72	□□□□□ -1.49
TRP1	YDR007W	YDR286C	Q05530	114 aa		5.72	□□□□□ -1.49
TRP1	YDR007W	YPR172W	Q06608	200 aa		5.72	□□□□□ -1.49
TRP1	YDR007W	OSW1	Q08692	278 aa		5.72	□□□□□ -1.49
TRP1	YDR007W	SMF3	Q12078	473 aa	Predicted RBP	5.72	□□□□□ -1.49
TRP1	YDR007W	RPN5	Q12250	445 aa	Known RBP	5.72	□□□□□ -1.49
TRP1	YDR007W	NUP188	P52593	1655 aa	Known RBP	5.72	□□□□□ -1.49
TRP1	YDR007W	ADE6	P38972	1358 aa	Known RBP	5.71	□□□□□ -1.5
TRP1	YDR007W	USO1	P25386	1790 aa		5.71	□□□□□ -1.5
TRP1	YDR007W	ARA1	P38115	344 aa		5.71	□□□□□ -1.5
TRP1	YDR007W	BNA4	P38169	460 aa		5.71	□□□□□ -1.5
TRP1	YDR007W	FES1	P38260	290 aa		5.71	□□□□□ -1.5
TRP1	YDR007W	INA22	P40576	216 aa		5.71	□□□□□ -1.5
TRP1	YDR007W	RBL2	P48606	106 aa	Known RBP	5.71	□□□□□ -1.5
TRP1	YDR007W	ALF1	P53904	254 aa		5.71	□□□□□ -1.5
TRP1	YDR007W	YKR005C	Q02203	525 aa		5.71	□□□□□ -1.5
TRP1	YDR007W	MGR3	Q04472	501 aa		5.71	□□□□□ -1.5
TRP1	YDR007W	SPC24	Q04477	213 aa		5.71	□□□□□ -1.5
TRP1	YDR007W	SFH1	Q06168	426 aa		5.71	□□□□□ -1.5
TRP1	YDR007W	YDL218W	Q07629	317 aa		5.71	□□□□□ -1.5
TRP1	YDR007W	FRE7	Q12333	620 aa		5.71	□□□□□ -1.5
TRP1	YDR007W	IML1	P47170	1584 aa		5.71	□□□□□ -1.5
TRP1	YDR007W	REP1	P03871	373 aa		5.7	□□□□□ -1.5
TRP1	YDR007W	RAD1	P06777	1100 aa		5.7	□□□□□ -1.5
TRP1	YDR007W	ERG11	P10614	530 aa		5.7	□□□□□ -1.5
TRP1	YDR007W	PEP5	P12868	1029 aa		5.7	□□□□□ -1.5
TRP1	YDR007W	HOM2	P13663	365 aa	Known RBP	5.7	□□□□□ -1.5
TRP1	YDR007W	ITR2	P30606	609 aa		5.7	□□□□□ -1.5
TRP1	YDR007W	SSO1	P32867	290 aa		5.7	□□□□□ -1.5
TRP1	YDR007W	TCM62	P38228	572 aa	Known RBP	5.7	□□□□□ -1.5
TRP1	YDR007W	LAG1	P38703	411 aa		5.7	□□□□□ -1.5
TRP1	YDR007W	TDA11	P38854	504 aa		5.7	□□□□□ -1.5
TRP1	YDR007W	SNO3	P43544	222 aa		5.7	□□□□□ -1.5
TRP1	YDR007W	VPS25	P47142	202 aa		5.7	□□□□□ -1.5
TRP1	YDR007W	RRP46	P53256	223 aa	Predicted RBP	5.7	□□□□□ -1.5
TRP1	YDR007W	ZPR1	P53303	486 aa	Known RBP	5.7	□□□□□ -1.5
TRP1	YDR007W	EOS1	P53938	366 aa		5.7	□□□□□ -1.5
TRP1	YDR007W	SLG1	P54867	378 aa		5.7	□□□□□ -1.5
TRP1	YDR007W	ACL4	Q03771	387 aa		5.7	□□□□□ -1.5
TRP1	YDR007W	YMR130W	Q04223	302 aa		5.7	□□□□□ -1.5
TRP1	YDR007W	RSF1	Q05043	376 aa		5.7	□□□□□ -1.5
TRP1	YDR007W	POS5	Q06892	414 aa		5.7	□□□□□ -1.5
TRP1	YDR007W	YOR365C	Q08844	703 aa		5.7	□□□□□ -1.5
TRP1	YDR007W	VIK1	Q12045	647 aa		5.7	□□□□□ -1.5
TRP1	YDR007W	MSH5	Q12175	901 aa		5.7	□□□□□ -1.5
TRP1	YDR007W	DNF3	Q12674	1656 aa		5.69	□□□□□ -1.5
TRP1	YDR007W	VMR1	P38735	1592 aa		5.69	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 14.3 ms