RNA–Protein interactions for RNA: YLR268W

SEC22, Transcript of R-SNARE protein, yeastyeast

Gene SEC22, Length 645 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC22YLR268W RIM20Q12033 661 aa2.18□□□□□ -2.06
SEC22YLR268W ATG29Q12092 213 aa2.18□□□□□ -2.06
SEC22YLR268W NCE102Q12207 173 aaRIP-Chip data2.18□□□□□ -2.06not detected
SEC22YLR268W SEC39Q12745 709 aa2.18□□□□□ -2.06
SEC22YLR268W YML133CQ03099 1374 aa2.18□□□□□ -2.06
SEC22YLR268W YLL067CQ07888 1374 aa2.18□□□□□ -2.06
SEC22YLR268W YLL066CQ99208 1374 aa2.18□□□□□ -2.06
SEC22YLR268W PRP2P20095 876 aaPredicted RBP2.17□□□□□ -2.06
SEC22YLR268W ROX1P25042 368 aa2.17□□□□□ -2.06
SEC22YLR268W MRE11P32829 692 aa2.17□□□□□ -2.06
SEC22YLR268W SHP1P34223 423 aa2.17□□□□□ -2.06
SEC22YLR268W RSM22P36056 628 aa2.17□□□□□ -2.06
SEC22YLR268W BNA4P38169 460 aa2.17□□□□□ -2.06
SEC22YLR268W NOC2P39744 710 aaKnown RBP2.17□□□□□ -2.06
SEC22YLR268W MET18P40469 1032 aa2.17□□□□□ -2.06
SEC22YLR268W TWF1P53250 332 aa2.17□□□□□ -2.06
SEC22YLR268W DRN1P53255 507 aaKnown RBP2.17□□□□□ -2.06
SEC22YLR268W JJJ1P53863 590 aa2.17□□□□□ -2.06
SEC22YLR268W HEF3P53978 1044 aaKnown RBP2.17□□□□□ -2.06
SEC22YLR268W PDS5Q04264 1277 aa2.17□□□□□ -2.06
SEC22YLR268W RBD2Q12270 262 aa2.17□□□□□ -2.06
SEC22YLR268W YDL007C-AQ2V2Q0 85 aa2.17□□□□□ -2.06
SEC22YLR268W RAV1P47104 1357 aa2.17□□□□□ -2.06
SEC22YLR268W MET17P06106 444 aa2.16□□□□□ -2.06
SEC22YLR268W RAD52P06778 471 aaKnown RBP2.16□□□□□ -2.06
SEC22YLR268W COR1P07256 457 aa2.16□□□□□ -2.06
SEC22YLR268W CLN3P13365 580 aa2.16□□□□□ -2.06
SEC22YLR268W HEM15P16622 393 aa2.16□□□□□ -2.06
SEC22YLR268W SGV1P23293 657 aaKnown RBP2.16□□□□□ -2.06
SEC22YLR268W ELO2P25358 347 aa2.16□□□□□ -2.06
SEC22YLR268W GPI10P30777 616 aa2.16□□□□□ -2.06
SEC22YLR268W UTR4P32626 227 aa2.16□□□□□ -2.06
SEC22YLR268W SDH3P33421 198 aa2.16□□□□□ -2.06
SEC22YLR268W CMC1P36064 111 aa2.16□□□□□ -2.06
SEC22YLR268W OTU2P38747 307 aaKnown RBP2.16□□□□□ -2.06
SEC22YLR268W TIF4631P39935 952 aaKnown RBP2.16□□□□□ -2.06
SEC22YLR268W HAT2P39984 401 aa2.16□□□□□ -2.06
SEC22YLR268W REE1P40893 198 aa2.16□□□□□ -2.06
SEC22YLR268W HXT14P42833 540 aa2.16□□□□□ -2.06
SEC22YLR268W CAF130P53280 1122 aaPredicted RBP2.16□□□□□ -2.06
SEC22YLR268W YLR287CQ05881 355 aa2.16□□□□□ -2.06
SEC22YLR268W ESA1Q08649 445 aa2.16□□□□□ -2.06
SEC22YLR268W SCM3Q12334 223 aa2.16□□□□□ -2.06
SEC22YLR268W RTN2Q12443 393 aa2.16□□□□□ -2.06
SEC22YLR268W BRR1Q99177 341 aaPredicted RBP2.16□□□□□ -2.06
SEC22YLR268W RPL31BP0C2H9 113 aaKnown RBP2.15□□□□□ -2.07
SEC22YLR268W FUR1P18562 216 aaKnown RBP2.15□□□□□ -2.07
SEC22YLR268W ERG3P32353 365 aa2.15□□□□□ -2.07
SEC22YLR268W SEC66P33754 206 aa2.15□□□□□ -2.07
SEC22YLR268W PMT1P33775 817 aa2.15□□□□□ -2.07
SEC22YLR268W TCM62P38228 572 aaKnown RBP2.15□□□□□ -2.07
SEC22YLR268W SMF1P38925 575 aa2.15□□□□□ -2.07
SEC22YLR268W YIL067CP40514 678 aa2.15□□□□□ -2.07
SEC22YLR268W GWT1P47026 490 aa2.15□□□□□ -2.07
SEC22YLR268W OCA1P50946 238 aaPredicted RBP2.15□□□□□ -2.07
SEC22YLR268W ZPR1P53303 486 aaKnown RBP2.15□□□□□ -2.07
SEC22YLR268W GPI1P53306 609 aa2.15□□□□□ -2.07
SEC22YLR268W PIR3Q03180 325 aa2.15□□□□□ -2.07
SEC22YLR268W SPC19Q03954 165 aa2.15□□□□□ -2.07
SEC22YLR268W SYF1Q04048 859 aaPredicted RBP2.15□□□□□ -2.07
SEC22YLR268W RQC1Q05468 723 aaKnown RBP2.15□□□□□ -2.07
SEC22YLR268W SFI1Q12369 946 aa2.15□□□□□ -2.07
SEC22YLR268W GRX6Q12438 231 aa2.15□□□□□ -2.07
SEC22YLR268W HIP1P06775 603 aa2.14□□□□□ -2.07
SEC22YLR268W RVS161P25343 265 aaKnown RBP2.14□□□□□ -2.07
SEC22YLR268W CRM1P30822 1084 aaKnown RBP2.14□□□□□ -2.07
SEC22YLR268W NFU1P32860 256 aa2.14□□□□□ -2.07
SEC22YLR268W DUG2P38149 878 aa2.14□□□□□ -2.07
SEC22YLR268W MBB1P39534 108 aa2.14□□□□□ -2.07
SEC22YLR268W YGL108CP53139 140 aa2.14□□□□□ -2.07
SEC22YLR268W SHY1P53266 389 aa2.14□□□□□ -2.07
SEC22YLR268W MDG1P53885 366 aa2.14□□□□□ -2.07
SEC22YLR268W YMR027WQ04371 470 aa2.14□□□□□ -2.07
SEC22YLR268W PHO92Q06390 306 aa2.14□□□□□ -2.07
SEC22YLR268W SUC2P00724 532 aa2.13□□□□□ -2.07
SEC22YLR268W MES1P00958 751 aaKnown RBP2.13□□□□□ -2.07
SEC22YLR268W CLB3P24870 427 aa2.13□□□□□ -2.07
SEC22YLR268W NPL6P32832 435 aa2.13□□□□□ -2.07
SEC22YLR268W CBP4P37267 147 aa2.13□□□□□ -2.07
SEC22YLR268W POP1P41812 875 aa2.13□□□□□ -2.07
SEC22YLR268W GPD2P41911 440 aaKnown RBP2.13□□□□□ -2.07
SEC22YLR268W MNP1P53163 194 aaPredicted RBP2.13□□□□□ -2.07
SEC22YLR268W SLG1P54867 378 aa2.13□□□□□ -2.07
SEC22YLR268W TSA2Q04120 196 aa2.13□□□□□ -2.07
SEC22YLR268W RBS1Q05672 457 aaKnown RBP2.13□□□□□ -2.07
SEC22YLR268W CFT2Q12102 859 aaPredicted RBP2.13□□□□□ -2.07
SEC22YLR268W PGA3Q12746 312 aaKnown RBP2.13□□□□□ -2.07
SEC22YLR268W RHO2P06781 192 aa2.12□□□□□ -2.07
SEC22YLR268W SPS4P09937 338 aa2.12□□□□□ -2.07
SEC22YLR268W RPL3P14126 387 aaKnown RBP2.12□□□□□ -2.07
SEC22YLR268W GLK1P17709 500 aaKnown RBP2.12□□□□□ -2.07
SEC22YLR268W CPR4P25334 318 aa2.12□□□□□ -2.07
SEC22YLR268W SPB1P25582 841 aaPredicted RBP2.12□□□□□ -2.07
SEC22YLR268W RAD14P28519 371 aa2.12□□□□□ -2.07
SEC22YLR268W AFG1P32317 509 aa2.12□□□□□ -2.07
SEC22YLR268W ATP11P32453 318 aa2.12□□□□□ -2.07
SEC22YLR268W SAS3P34218 831 aa2.12□□□□□ -2.07
SEC22YLR268W MPE1P35728 441 aaKnown RBP2.12□□□□□ -2.07
SEC22YLR268W NAT2P37293 288 aa2.12□□□□□ -2.07
SEC22YLR268W MRP21P38175 177 aa2.12□□□□□ -2.07
Retrieved 100 of 5,963 RNA–protein pairs in 29.2 ms