RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	BCP1	Q06338	283 aa		3.67	□□□□□ -1.82
NUP85	YJR042W	ARR2	Q06597	130 aa		3.67	□□□□□ -1.82
NUP85	YJR042W	TY1A-NL1	Q12391	440 aa	Known RBP	3.67	□□□□□ -1.82
NUP85	YJR042W	APC2	Q12440	853 aa		3.67	□□□□□ -1.82
NUP85	YJR042W	RRP12	Q12754	1228 aa	Known RBP	3.67	□□□□□ -1.82
NUP85	YJR042W	YDR461C-A	Q2V2P7	80 aa		3.67	□□□□□ -1.82
NUP85	YJR042W	YPR089W	O13585	888 aa		3.67	□□□□□ -1.82
NUP85	YJR042W	AAC1	P04710	309 aa		3.67	□□□□□ -1.82
NUP85	YJR042W	RPL22A	P05749	121 aa	Known RBP	3.67	□□□□□ -1.82
NUP85	YJR042W	PDC5	P16467	563 aa	Known RBP	3.67	□□□□□ -1.82
NUP85	YJR042W	PEX1	P24004	1043 aa		3.67	□□□□□ -1.82
NUP85	YJR042W	PTC6	P25646	442 aa		3.67	□□□□□ -1.82
NUP85	YJR042W	ITR1	P30605	584 aa		3.67	□□□□□ -1.82
NUP85	YJR042W	KKQ8	P36004	724 aa		3.67	□□□□□ -1.82
NUP85	YJR042W	RFC5	P38251	354 aa		3.67	□□□□□ -1.82
NUP85	YJR042W	CDC40	P40968	455 aa	Predicted RBP	3.67	□□□□□ -1.82
NUP85	YJR042W	YJL107C	P42947	387 aa		3.67	□□□□□ -1.82
NUP85	YJR042W	NMD5	P46970	1048 aa		3.67	□□□□□ -1.82
NUP85	YJR042W	COS5	P47187	383 aa		3.67	□□□□□ -1.82
NUP85	YJR042W	IPI3	P53877	555 aa		3.67	□□□□□ -1.82
NUP85	YJR042W	SLG1	P54867	378 aa		3.67	□□□□□ -1.82
NUP85	YJR042W	SKO1	Q02100	647 aa		3.67	□□□□□ -1.82
NUP85	YJR042W	COS7	Q07788	383 aa		3.67	□□□□□ -1.82
NUP85	YJR042W	YOL107W	Q12239	342 aa		3.67	□□□□□ -1.82
NUP85	YJR042W	STE2	D6VTK4	431 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	YLR415C	O13578	112 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	MSF1	P08425	469 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	PET111	P08468	800 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	KRS1	P15180	591 aa	Known RBP	3.66	□□□□□ -1.82
NUP85	YJR042W	SIP1	P32578	815 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	TRM2	P33753	639 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	IML3	P38265	245 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	YHR045W	P38775	560 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	TOM71	P38825	639 aa	Known RBP	3.66	□□□□□ -1.82
NUP85	YJR042W	CIN4	P39110	191 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	YER130C	P39959	443 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	URM1	P40554	99 aa	Predicted RBP	3.66	□□□□□ -1.82
NUP85	YJR042W	FMP33	P46998	180 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	AIM22	P47051	409 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	HAM1	P47119	197 aa	Known RBP	3.66	□□□□□ -1.82
NUP85	YJR042W	DIA3	P52290	468 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	YGR117C	P53270	476 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	YGR126W	P53274	230 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	PET117	Q02771	107 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	YLR455W	Q06188	304 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	YFT2	Q06676	274 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	FMP40	Q08968	688 aa	Predicted RBP	3.66	□□□□□ -1.82
NUP85	YJR042W	ATG31	Q12421	196 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	YLR278C	Q05854	1341 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	POL30	P15873	258 aa	Known RBP	3.66	□□□□□ -1.82
NUP85	YJR042W	FUS3	P16892	353 aa	Known RBP	3.66	□□□□□ -1.82
NUP85	YJR042W	RVS161	P25343	265 aa	Known RBP	3.66	□□□□□ -1.82
NUP85	YJR042W	BOS1	P25385	244 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	PUP3	P25451	205 aa	Known RBP	3.66	□□□□□ -1.82
NUP85	YJR042W	GSY2	P27472	705 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	KDX1	P36005	433 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	SWC5	P38326	303 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	YHL012W	P38709	493 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	YHR177W	P38867	453 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	GPI16	P38875	610 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	YHB1	P39676	399 aa	Known RBP	3.66	□□□□□ -1.82
NUP85	YJR042W	UTP18	P40362	594 aa	Predicted RBP	3.66	□□□□□ -1.82
NUP85	YJR042W	YGR079W	P53249	370 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	EKI1	Q03764	534 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	TLG2	Q08144	397 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	SLK19	Q08581	821 aa	Known RBP	3.66	□□□□□ -1.82
NUP85	YJR042W	PUS9	Q12069	462 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	LAM4	P38800	1345 aa		3.66	□□□□□ -1.82
NUP85	YJR042W	CAR1	P00812	333 aa	Known RBP	3.65	□□□□□ -1.83
NUP85	YJR042W	SPE1	P08432	466 aa		3.65	□□□□□ -1.83
NUP85	YJR042W	RPI1	P23250	407 aa	Known RBP	3.65	□□□□□ -1.83
NUP85	YJR042W	DSS4	P32601	143 aa		3.65	□□□□□ -1.83
NUP85	YJR042W	SLX1	P38324	304 aa		3.65	□□□□□ -1.83
NUP85	YJR042W	ERG7	P38604	731 aa		3.65	□□□□□ -1.83
NUP85	YJR042W	IMD2	P38697	523 aa	Known RBP	3.65	□□□□□ -1.83
NUP85	YJR042W	SKN7	P38889	622 aa		3.65	□□□□□ -1.83
NUP85	YJR042W	YJL193W	P39542	402 aa		3.65	□□□□□ -1.83
NUP85	YJR042W	ECM1	P39715	212 aa		3.65	□□□□□ -1.83
NUP85	YJR042W	TMN3	P40071	706 aa		3.65	□□□□□ -1.83
NUP85	YJR042W	OPT1	P40897	799 aa		3.65	□□□□□ -1.83
NUP85	YJR042W	OYE3	P41816	400 aa	Predicted RBP	3.65	□□□□□ -1.83
NUP85	YJR042W	YFL066C	P43538	392 aa		3.65	□□□□□ -1.83
NUP85	YJR042W	SNG1	P46950	547 aa		3.65	□□□□□ -1.83
NUP85	YJR042W	IRC8	P47046	822 aa		3.65	□□□□□ -1.83
NUP85	YJR042W	MTL1	P53214	551 aa		3.65	□□□□□ -1.83
NUP85	YJR042W	SPC98	P53540	846 aa		3.65	□□□□□ -1.83
NUP85	YJR042W	PRM1	P53835	661 aa		3.65	□□□□□ -1.83
NUP85	YJR042W	UBP16	Q02863	499 aa		3.65	□□□□□ -1.83
NUP85	YJR042W	VPS60	Q03390	229 aa		3.65	□□□□□ -1.83
NUP85	YJR042W	URH1	Q04179	340 aa		3.65	□□□□□ -1.83
NUP85	YJR042W	BUD22	Q04347	519 aa	Known RBP	3.65	□□□□□ -1.83
NUP85	YJR042W	ATG23	Q06671	453 aa		3.65	□□□□□ -1.83
NUP85	YJR042W	RDR1	Q08904	546 aa		3.65	□□□□□ -1.83
NUP85	YJR042W	TY1A-BL	Q12266	440 aa		3.65	□□□□□ -1.83
NUP85	YJR042W	FMP16	Q12497	93 aa		3.65	□□□□□ -1.83
NUP85	YJR042W	POM152	P39685	1337 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	AI1	P03875	834 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	SEC63	P14906	663 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	PRP16	P15938	1071 aa	Predicted RBP	3.64	□□□□□ -1.83
NUP85	YJR042W	DAL2	P25335	343 aa		3.64	□□□□□ -1.83

Retrieved 100 of 5,963 RNA–protein pairs in 24.6 ms