RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEP1	YAL013W	AAR2	P32357	355 aa	Predicted RBP	13.63	□□□□□ -0.23
DEP1	YAL013W	DED81	P38707	554 aa	Known RBP	13.63	□□□□□ -0.23
DEP1	YAL013W	RRP3	P38712	501 aa	Known RBP	13.63	□□□□□ -0.23
DEP1	YAL013W	PFS1	P38872	237 aa		13.63	□□□□□ -0.23
DEP1	YAL013W	AIM22	P47051	409 aa		13.63	□□□□□ -0.23
DEP1	YAL013W	COS6	P53344	381 aa		13.63	□□□□□ -0.23
DEP1	YAL013W	NIS1	P53939	407 aa		13.63	□□□□□ -0.23
DEP1	YAL013W	RPM2	Q02773	1202 aa		13.63	□□□□□ -0.23
DEP1	YAL013W	BSC2	Q05611	235 aa		13.63	□□□□□ -0.23
DEP1	YAL013W	HCM1	P25364	564 aa		13.62	□□□□□ -0.23
DEP1	YAL013W	NOP9	P47077	666 aa	Known RBP	13.62	□□□□□ -0.23
DEP1	YAL013W	GET1	P53192	235 aa		13.62	□□□□□ -0.23
DEP1	YAL013W	CTK1	Q03957	528 aa	Known RBP	13.62	□□□□□ -0.23
DEP1	YAL013W	SPC2	Q04969	178 aa		13.62	□□□□□ -0.23
DEP1	YAL013W	YHC1	Q05900	231 aa	Known RBP	13.62	□□□□□ -0.23
DEP1	YAL013W	MSB2	P32334	1306 aa		13.62	□□□□□ -0.23
DEP1	YAL013W	MSS116	P15424	664 aa	Known RBP	13.61	□□□□□ -0.23
DEP1	YAL013W	SLM5	P25345	492 aa	Known RBP	13.61	□□□□□ -0.23
DEP1	YAL013W	DPH5	P32469	300 aa	Predicted RBP	13.61	□□□□□ -0.23
DEP1	YAL013W	GAB1	P41733	394 aa		13.61	□□□□□ -0.23
DEP1	YAL013W	MET31	Q03081	177 aa		13.61	□□□□□ -0.23
DEP1	YAL013W	RTT10	Q08924	1013 aa		13.61	□□□□□ -0.23
DEP1	YAL013W	PFA4	Q12006	378 aa		13.61	□□□□□ -0.23
DEP1	YAL013W	NMD4	Q12129	218 aa		13.61	□□□□□ -0.23
DEP1	YAL013W	ADF1	Q2V2Q1	113 aa		13.61	□□□□□ -0.23
DEP1	YAL013W	BRR1	Q99177	341 aa	Predicted RBP	13.61	□□□□□ -0.23
DEP1	YAL013W	LEU4	P06208	619 aa	Known RBP	13.6	□□□□□ -0.23
DEP1	YAL013W	TRX3	P25372	127 aa		13.6	□□□□□ -0.23
DEP1	YAL013W	ATO2	P32907	282 aa		13.6	□□□□□ -0.23
DEP1	YAL013W	KKQ8	P36004	724 aa		13.6	□□□□□ -0.23
DEP1	YAL013W	SRX1	P36077	127 aa		13.6	□□□□□ -0.23
DEP1	YAL013W	YKR078W	P36158	585 aa	Known RBP	13.6	□□□□□ -0.23
DEP1	YAL013W	PDX3	P38075	228 aa	Known RBP	13.6	□□□□□ -0.23
DEP1	YAL013W	SSU1	P41930	458 aa		13.6	□□□□□ -0.23
DEP1	YAL013W	TY4A-J	P47023	414 aa		13.6	□□□□□ -0.23
DEP1	YAL013W	YNL033W	P53964	284 aa		13.6	□□□□□ -0.23
DEP1	YAL013W	YNL019C	P53975	284 aa		13.6	□□□□□ -0.23
DEP1	YAL013W	YOL159C	Q08300	171 aa		13.6	□□□□□ -0.23
DEP1	YAL013W	ARG81	P05085	880 aa		13.59	□□□□□ -0.23
DEP1	YAL013W	RPS21A	P0C0V8	87 aa	Known RBP	13.59	□□□□□ -0.23
DEP1	YAL013W	ERG6	P25087	383 aa	Known RBP	13.59	□□□□□ -0.23
DEP1	YAL013W	ATG7	P38862	630 aa		13.59	□□□□□ -0.23
DEP1	YAL013W	DSS1	P39112	969 aa		13.59	□□□□□ -0.23
DEP1	YAL013W	TIF34	P40217	347 aa	Known RBP	13.59	□□□□□ -0.23
DEP1	YAL013W	SGF73	P53165	657 aa		13.59	□□□□□ -0.23
DEP1	YAL013W	YLL054C	Q12244	843 aa		13.59	□□□□□ -0.23
DEP1	YAL013W	MDM35	O60200	86 aa		13.58	□□□□□ -0.24
DEP1	YAL013W	RAS2	P01120	322 aa	Known RBP	13.58	□□□□□ -0.24
DEP1	YAL013W	ARG3	P05150	338 aa		13.58	□□□□□ -0.24
DEP1	YAL013W	YAK1	P14680	807 aa		13.58	□□□□□ -0.24
DEP1	YAL013W	AST1	P35183	429 aa		13.58	□□□□□ -0.24
DEP1	YAL013W	DSF2	P38213	736 aa		13.58	□□□□□ -0.24
DEP1	YAL013W	FAD1	P38913	306 aa		13.58	□□□□□ -0.24
DEP1	YAL013W	ECM10	P39987	644 aa		13.58	□□□□□ -0.24
DEP1	YAL013W	CAB2	P40506	365 aa		13.58	□□□□□ -0.24
DEP1	YAL013W	SEC26	P41810	973 aa	Known RBP	13.58	□□□□□ -0.24
DEP1	YAL013W	FMP33	P46998	180 aa		13.58	□□□□□ -0.24
DEP1	YAL013W	NAN1	Q02931	896 aa	Known RBP	13.58	□□□□□ -0.24
DEP1	YAL013W	MUS81	Q04149	632 aa	Predicted RBP	13.58	□□□□□ -0.24
DEP1	YAL013W	RAD33	Q04231	177 aa		13.58	□□□□□ -0.24
DEP1	YAL013W	MSS18	P08593	268 aa		13.57	□□□□□ -0.24
DEP1	YAL013W	PRI2	P20457	528 aa		13.57	□□□□□ -0.24
DEP1	YAL013W	RPT5	P33297	434 aa	Known RBP	13.57	□□□□□ -0.24
DEP1	YAL013W	MRP8	P35719	219 aa		13.57	□□□□□ -0.24
DEP1	YAL013W	UPF3	P48412	387 aa	Known RBP	13.57	□□□□□ -0.24
DEP1	YAL013W	YNL140C	P53910	189 aa		13.57	□□□□□ -0.24
DEP1	YAL013W	SVL3	Q03088	825 aa	Known RBP	13.57	□□□□□ -0.24
DEP1	YAL013W	GMC2	Q06201	188 aa		13.57	□□□□□ -0.24
DEP1	YAL013W	YOL131W	Q08270	108 aa		13.57	□□□□□ -0.24
DEP1	YAL013W	MLH3	Q12083	715 aa		13.57	□□□□□ -0.24
DEP1	YAL013W	HAL9	Q12180	1030 aa		13.57	□□□□□ -0.24
DEP1	YAL013W	YPR096C	O13587	100 aa		13.56	□□□□□ -0.24
DEP1	YAL013W	COX3	P00420	269 aa		13.56	□□□□□ -0.24
DEP1	YAL013W	KAR1	P11927	433 aa		13.56	□□□□□ -0.24
DEP1	YAL013W	RVS161	P25343	265 aa	Known RBP	13.56	□□□□□ -0.24
DEP1	YAL013W	UBP14	P38237	781 aa	Known RBP	13.56	□□□□□ -0.24
DEP1	YAL013W	TRM7	P38238	310 aa	Known RBP	13.56	□□□□□ -0.24
DEP1	YAL013W	RGI1	P40043	161 aa	Predicted RBP	13.56	□□□□□ -0.24
DEP1	YAL013W	YIL108W	P40483	696 aa	Known RBP	13.56	□□□□□ -0.24
DEP1	YAL013W	YJR142W	P47173	342 aa		13.56	□□□□□ -0.24
DEP1	YAL013W	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	13.56	□□□□□ -0.24	not detected
DEP1	YAL013W	TFB1	P32776	642 aa		13.55	□□□□□ -0.24
DEP1	YAL013W	SPO23	P33757	523 aa		13.55	□□□□□ -0.24
DEP1	YAL013W	SKG1	P36169	355 aa		13.55	□□□□□ -0.24
DEP1	YAL013W	COS111	P38308	924 aa		13.55	□□□□□ -0.24
DEP1	YAL013W	TDP1	P38319	544 aa		13.55	□□□□□ -0.24
DEP1	YAL013W	PCF11	P39081	626 aa	Predicted RBP	13.55	□□□□□ -0.24
DEP1	YAL013W	AZF1	P41696	914 aa		13.55	□□□□□ -0.24
DEP1	YAL013W	FMP32	P43557	207 aa		13.55	□□□□□ -0.24
DEP1	YAL013W	MNN10	P50108	393 aa	Known RBP	13.55	□□□□□ -0.24
DEP1	YAL013W	KXD1	P53158	218 aa		13.55	□□□□□ -0.24
DEP1	YAL013W	GPI1	P53306	609 aa		13.55	□□□□□ -0.24
DEP1	YAL013W	HOT1	Q03213	719 aa		13.55	□□□□□ -0.24
DEP1	YAL013W	VPS74	Q06385	345 aa		13.55	□□□□□ -0.24
DEP1	YAL013W	TFB4	Q12004	338 aa		13.55	□□□□□ -0.24
DEP1	YAL013W	RPN6	Q12377	434 aa		13.55	□□□□□ -0.24
DEP1	YAL013W	THP2	O13539	261 aa	Known RBP	13.54	□□□□□ -0.24
DEP1	YAL013W	TY2A-LR1	P0C2J4	438 aa		13.54	□□□□□ -0.24
DEP1	YAL013W	TY2A-F	P0CX61	438 aa		13.54	□□□□□ -0.24
DEP1	YAL013W	TY2A-GR2	P0CX62	438 aa		13.54	□□□□□ -0.24

Retrieved 100 of 5,963 RNA–protein pairs in 55.8 ms