RNA–Protein interactions for RNA: YPL016W

SWI1, Transcript of Subunit of the SWI/SNF chromatin remodeling complex, yeast

Gene SWI1, Length 3,945 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SWI1	YPL016W	SPT21	P35209	758 aa		5.15	□□□□□ -1.58
SWI1	YPL016W	AUS1	Q08409	1394 aa		5.14	□□□□□ -1.59
SWI1	YPL016W	PSK1	P31374	1356 aa		5.13	□□□□□ -1.59
SWI1	YPL016W	RTC1	Q08281	1341 aa		5.12	□□□□□ -1.59
SWI1	YPL016W	MOT1	P32333	1867 aa		5.12	□□□□□ -1.59
SWI1	YPL016W	OPY1	P38271	328 aa		5.1	□□□□□ -1.59
SWI1	YPL016W	ENV11	P53246	860 aa		5.08	□□□□□ -1.6
SWI1	YPL016W	IME2	P32581	645 aa		5.07	□□□□□ -1.6
SWI1	YPL016W	DRS2	P39524	1355 aa		5.03	□□□□□ -1.6
SWI1	YPL016W	PRY3	P47033	881 aa		5.03	□□□□□ -1.6
SWI1	YPL016W	UBR2	Q07963	1872 aa		5.02	□□□□□ -1.61
SWI1	YPL016W	SPT7	P35177	1332 aa		5.02	□□□□□ -1.61
SWI1	YPL016W	RIF1	P29539	1916 aa		5.02	□□□□□ -1.61
SWI1	YPL016W	ECM29	P38737	1868 aa		5.01	□□□□□ -1.61
SWI1	YPL016W	SEC3	P33332	1336 aa	Known RBP	5	□□□□□ -1.61
SWI1	YPL016W	MHP1	P43638	1398 aa		4.99	□□□□□ -1.61
SWI1	YPL016W	DIP2	Q12220	943 aa	Predicted RBP	4.99	□□□□□ -1.61
SWI1	YPL016W	KRI1	P42846	591 aa	Known RBP	4.99	□□□□□ -1.61
SWI1	YPL016W	NST1	P53935	1240 aa		4.98	□□□□□ -1.61
SWI1	YPL016W	ADE6	P38972	1358 aa	Known RBP	4.98	□□□□□ -1.61
SWI1	YPL016W	LAA1	P39526	2014 aa		4.97	□□□□□ -1.61
SWI1	YPL016W	FUN12	P39730	1002 aa	Known RBP	4.96	□□□□□ -1.62
SWI1	YPL016W	TFA1	P36100	482 aa		4.95	□□□□□ -1.62
SWI1	YPL016W	YEF3	P16521	1044 aa	Known RBP	4.95	□□□□□ -1.62
SWI1	YPL016W	SIR4	P11978	1358 aa		4.95	□□□□□ -1.62
SWI1	YPL016W	EDE1	P34216	1381 aa		4.93	□□□□□ -1.62
SWI1	YPL016W	TCB2	P48231	1178 aa		4.93	□□□□□ -1.62
SWI1	YPL016W	KRE33	P53914	1056 aa	Known RBP	4.92	□□□□□ -1.62
SWI1	YPL016W	MTC1	P47018	478 aa	Known RBP	4.91	□□□□□ -1.62
SWI1	YPL016W	ABP1	P15891	592 aa	Known RBP	4.9	□□□□□ -1.62
SWI1	YPL016W	YGR130C	P53278	816 aa		4.9	□□□□□ -1.62
SWI1	YPL016W	LEO1	P38439	464 aa		4.9	□□□□□ -1.63
SWI1	YPL016W	ENP1	P38333	483 aa	Known RBP	4.89	□□□□□ -1.63
SWI1	YPL016W	RRP46	P53256	223 aa	Predicted RBP	4.89	□□□□□ -1.63
SWI1	YPL016W	RPS0B	P46654	252 aa	Known RBP	4.89	□□□□□ -1.63
SWI1	YPL016W	SWE1	P32944	819 aa		4.87	□□□□□ -1.63
SWI1	YPL016W	PXL1	P36166	706 aa		4.86	□□□□□ -1.63
SWI1	YPL016W	CLC1	P17891	233 aa		4.86	□□□□□ -1.63
SWI1	YPL016W	IFH1	P39520	1085 aa		4.83	□□□□□ -1.64
SWI1	YPL016W	TIF4632	P39936	914 aa	Known RBP	4.82	□□□□□ -1.64
SWI1	YPL016W	NUG1	P40010	520 aa	Known RBP	4.81	□□□□□ -1.64
SWI1	YPL016W	SIC1	P38634	284 aa		4.81	□□□□□ -1.64
SWI1	YPL016W	RAD26	P40352	1085 aa		4.79	□□□□□ -1.64
SWI1	YPL016W	CTR9	P89105	1077 aa		4.79	□□□□□ -1.64
SWI1	YPL016W	LEU3	P08638	886 aa		4.78	□□□□□ -1.64
SWI1	YPL016W	KNS1	P32350	737 aa	Predicted RBP	4.78	□□□□□ -1.64
SWI1	YPL016W	HEF3	P53978	1044 aa	Known RBP	4.78	□□□□□ -1.65
SWI1	YPL016W	BMS1	Q08965	1183 aa	Known RBP	4.78	□□□□□ -1.65
SWI1	YPL016W	NOP53	Q12080	455 aa	Known RBP	4.78	□□□□□ -1.65
SWI1	YPL016W	YAP3	P38749	330 aa		4.77	□□□□□ -1.65
SWI1	YPL016W	ECM23	Q02710	187 aa		4.77	□□□□□ -1.65
SWI1	YPL016W	NAP1	P25293	417 aa	Known RBP	4.77	□□□□□ -1.65
SWI1	YPL016W	GRX3	Q03835	250 aa		4.77	□□□□□ -1.65
SWI1	YPL016W	ROM2	P51862	1356 aa	Known RBP	4.77	□□□□□ -1.65
SWI1	YPL016W	BNR1	P40450	1375 aa		4.76	□□□□□ -1.65
SWI1	YPL016W	PSD2	P53037	1138 aa	Known RBP	4.76	□□□□□ -1.65
SWI1	YPL016W	PRP43	P53131	767 aa	Known RBP	4.76	□□□□□ -1.65
SWI1	YPL016W	SLN1	P39928	1220 aa	Predicted RBP	4.75	□□□□□ -1.65
SWI1	YPL016W	DYN1	P36022	4092 aa		4.74	□□□□□ -1.65
SWI1	YPL016W	DJP1	P40564	432 aa		4.74	□□□□□ -1.65
SWI1	YPL016W	RSF2	P46974	1380 aa		4.74	□□□□□ -1.65
SWI1	YPL016W	FPR3	P38911	411 aa	Known RBP	4.74	□□□□□ -1.65
SWI1	YPL016W	ETT1	Q08421	412 aa	Known RBP	4.72	□□□□□ -1.65
SWI1	YPL016W	SNF7	P39929	240 aa	Known RBP	4.72	□□□□□ -1.65
SWI1	YPL016W	PSH1	Q12161	406 aa		4.72	□□□□□ -1.65
SWI1	YPL016W	ECM16	Q04217	1267 aa	Known RBP	4.71	□□□□□ -1.66
SWI1	YPL016W	RPC31	P17890	251 aa		4.7	□□□□□ -1.66
SWI1	YPL016W	MSH3	P25336	1018 aa		4.7	□□□□□ -1.66
SWI1	YPL016W	VPS4	P52917	437 aa		4.7	□□□□□ -1.66
SWI1	YPL016W	ROX1	P25042	368 aa		4.7	□□□□□ -1.66
SWI1	YPL016W	RPP0	P05317	312 aa	Known RBP	4.69	□□□□□ -1.66
SWI1	YPL016W	SPC110	P32380	944 aa		4.69	□□□□□ -1.66
SWI1	YPL016W	LYS2	P07702	1392 aa		4.69	□□□□□ -1.66
SWI1	YPL016W	MED8	P38304	223 aa		4.69	□□□□□ -1.66
SWI1	YPL016W	YNL035C	P53962	389 aa	Known RBP	4.69	□□□□□ -1.66
SWI1	YPL016W	FKH1	P40466	484 aa		4.69	□□□□□ -1.66
SWI1	YPL016W	SAS10	Q12136	610 aa	Predicted RBP	4.69	□□□□□ -1.66
SWI1	YPL016W	AIM44	Q99299	758 aa		4.69	□□□□□ -1.66
SWI1	YPL016W	KRE5	P22023	1365 aa		4.67	□□□□□ -1.66
SWI1	YPL016W	KIP3	P53086	805 aa	Known RBP	4.67	□□□□□ -1.66
SWI1	YPL016W	CCC2	P38995	1004 aa		4.67	□□□□□ -1.66
SWI1	YPL016W	MBR1	P23493	339 aa		4.66	□□□□□ -1.66
SWI1	YPL016W	CLB5	P30283	435 aa		4.66	□□□□□ -1.66
SWI1	YPL016W	TY1B-A	O13527	1196 aa	Known RBP	4.65	□□□□□ -1.66
SWI1	YPL016W	YPP1	P46951	817 aa		4.65	□□□□□ -1.66
SWI1	YPL016W	DSF2	P38213	736 aa		4.65	□□□□□ -1.66
SWI1	YPL016W	ECM1	P39715	212 aa		4.65	□□□□□ -1.67
SWI1	YPL016W	RTT106	P40161	455 aa		4.65	□□□□□ -1.67
SWI1	YPL016W	APL6	P46682	809 aa		4.65	□□□□□ -1.67
SWI1	YPL016W	YNL011C	P53980	444 aa		4.65	□□□□□ -1.67
SWI1	YPL016W	HRQ1	Q05549	1077 aa		4.65	□□□□□ -1.67
SWI1	YPL016W	TRL1	P09880	827 aa	Known RBP	4.64	□□□□□ -1.67
SWI1	YPL016W	RIM101	P33400	625 aa		4.64	□□□□□ -1.67
SWI1	YPL016W	POL5	P39985	1022 aa	Known RBP	4.64	□□□□□ -1.67
SWI1	YPL016W	NPL4	P33755	580 aa		4.63	□□□□□ -1.67
SWI1	YPL016W	RRT14	P40470	206 aa		4.63	□□□□□ -1.67
SWI1	YPL016W	RLF2	Q12495	606 aa		4.63	□□□□□ -1.67
SWI1	YPL016W	DEF1	P35732	738 aa	Known RBP	4.63	□□□□□ -1.67
SWI1	YPL016W	RAD9	P14737	1309 aa		4.62	□□□□□ -1.67
SWI1	YPL016W	PAF1	P38351	445 aa		4.62	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 14.4 ms