RNA–Protein interactions for RNA: YLR430W

SEN1, Transcript of Presumed helicase and subunit of the Nrd1 complex (Nrd1p-Nab3p-Sen1p), yeast

Gene SEN1, Length 6,696 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEN1	YLR430W	UTP13	Q05946	817 aa	Known RBP	4.9	□□□□□ -1.62
SEN1	YLR430W	PBY1	P38254	753 aa		4.9	□□□□□ -1.63
SEN1	YLR430W	PXR1	P53335	271 aa	Predicted RBP	4.9	□□□□□ -1.63
SEN1	YLR430W	KAR3	P17119	729 aa		4.9	□□□□□ -1.63
SEN1	YLR430W	SPB4	P25808	606 aa	Predicted RBP	4.9	□□□□□ -1.63
SEN1	YLR430W	YOL087C	Q99247	1116 aa		4.9	□□□□□ -1.63
SEN1	YLR430W	NUP159	P40477	1460 aa		4.9	□□□□□ -1.63
SEN1	YLR430W	ITC1	P53125	1264 aa		4.9	□□□□□ -1.63
SEN1	YLR430W	PUS1	Q12211	544 aa	Known RBP	4.9	□□□□□ -1.63
SEN1	YLR430W	SFI1	Q12369	946 aa		4.9	□□□□□ -1.63
SEN1	YLR430W	RRP14	P36080	434 aa	Known RBP	4.89	□□□□□ -1.63
SEN1	YLR430W	CEP3	P40969	608 aa		4.89	□□□□□ -1.63
SEN1	YLR430W	RAD3	P06839	778 aa		4.89	□□□□□ -1.63
SEN1	YLR430W	SNU71	P53207	620 aa	Known RBP	4.89	□□□□□ -1.63
SEN1	YLR430W	MCM2	P29469	868 aa		4.89	□□□□□ -1.63
SEN1	YLR430W	IFH1	P39520	1085 aa		4.89	□□□□□ -1.63
SEN1	YLR430W	RTT107	P38850	1070 aa		4.89	□□□□□ -1.63
SEN1	YLR430W	RSC1	P53236	928 aa		4.89	□□□□□ -1.63
SEN1	YLR430W	SWH1	P35845	1188 aa		4.88	□□□□□ -1.63
SEN1	YLR430W	MIC60	P36112	540 aa		4.88	□□□□□ -1.63
SEN1	YLR430W	TLG1	Q03322	224 aa		4.88	□□□□□ -1.63
SEN1	YLR430W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.88	□□□□□ -1.63	not detected
SEN1	YLR430W	NDC80	P40460	691 aa		4.88	□□□□□ -1.63
SEN1	YLR430W	NAB3	P38996	802 aa	Known RBP RIP-Chip data	4.88	□□□□□ -1.63	not detected
SEN1	YLR430W	HIF1	Q12373	385 aa		4.88	□□□□□ -1.63
SEN1	YLR430W	CDC11	P32458	415 aa		4.87	□□□□□ -1.63
SEN1	YLR430W	HAP5	Q02516	242 aa		4.87	□□□□□ -1.63
SEN1	YLR430W	SML1	Q04964	104 aa		4.87	□□□□□ -1.63
SEN1	YLR430W	BDP1	P46678	594 aa		4.87	□□□□□ -1.63
SEN1	YLR430W	UBP10	P53874	792 aa	Predicted RBP	4.87	□□□□□ -1.63
SEN1	YLR430W	DNA2	P38859	1522 aa		4.87	□□□□□ -1.63
SEN1	YLR430W	YKR023W	P36119	530 aa	Known RBP	4.87	□□□□□ -1.63
SEN1	YLR430W	MDG1	P53885	366 aa		4.87	□□□□□ -1.63
SEN1	YLR430W	SRS2	P12954	1174 aa		4.87	□□□□□ -1.63
SEN1	YLR430W	HSC82	P15108	705 aa	Known RBP	4.87	□□□□□ -1.63
SEN1	YLR430W	TOA1	P32773	286 aa		4.87	□□□□□ -1.63
SEN1	YLR430W	YGL140C	P53120	1219 aa		4.87	□□□□□ -1.63
SEN1	YLR430W	ALD3	P54114	506 aa		4.86	□□□□□ -1.63
SEN1	YLR430W	YDL144C	Q07589	356 aa		4.86	□□□□□ -1.63
SEN1	YLR430W	REV3	P14284	1504 aa		4.86	□□□□□ -1.63
SEN1	YLR430W	HOS4	P40480	1083 aa		4.86	□□□□□ -1.63
SEN1	YLR430W	YLL054C	Q12244	843 aa		4.86	□□□□□ -1.63
SEN1	YLR430W	NUP157	P40064	1391 aa	Known RBP	4.85	□□□□□ -1.63
SEN1	YLR430W	PET123	P17558	318 aa		4.85	□□□□□ -1.63
SEN1	YLR430W	CYC8	P14922	966 aa		4.85	□□□□□ -1.63
SEN1	YLR430W	RPC82	P32349	654 aa		4.85	□□□□□ -1.63
SEN1	YLR430W	VID30	P53076	958 aa		4.85	□□□□□ -1.63
SEN1	YLR430W	PSO2	P30620	661 aa		4.85	□□□□□ -1.63
SEN1	YLR430W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	4.84	□□□□□ -1.63	not detected
SEN1	YLR430W	TY4B-P	A0A0B7P3V8	1104 aa		4.84	□□□□□ -1.63
SEN1	YLR430W	PSE1	P32337	1089 aa	Known RBP	4.84	□□□□□ -1.63
SEN1	YLR430W	RPN12	P32496	274 aa		4.84	□□□□□ -1.63
SEN1	YLR430W	MRC1	P25588	1096 aa		4.84	□□□□□ -1.63
SEN1	YLR430W	HSL1	P34244	1518 aa		4.84	□□□□□ -1.64
SEN1	YLR430W	ARD1	P07347	238 aa	Predicted RBP	4.84	□□□□□ -1.64
SEN1	YLR430W	TIF4632	P39936	914 aa	Known RBP	4.84	□□□□□ -1.64
SEN1	YLR430W	RPG1	P38249	964 aa	Known RBP	4.83	□□□□□ -1.64
SEN1	YLR430W	VPS41	P38959	992 aa		4.83	□□□□□ -1.64
SEN1	YLR430W	SAP1	P39955	897 aa	Known RBP	4.83	□□□□□ -1.64
SEN1	YLR430W	MSH1	P25846	959 aa		4.83	□□□□□ -1.64
SEN1	YLR430W	RSC8	P43609	557 aa	Known RBP	4.83	□□□□□ -1.64
SEN1	YLR430W	MPP10	P47083	593 aa	Known RBP	4.83	□□□□□ -1.64
SEN1	YLR430W	SEC14	P24280	304 aa	Known RBP	4.83	□□□□□ -1.64
SEN1	YLR430W	NHA1	Q99271	985 aa		4.83	□□□□□ -1.64
SEN1	YLR430W	EFB1	P32471	206 aa	Known RBP	4.82	□□□□□ -1.64
SEN1	YLR430W	YMR102C	Q03177	834 aa		4.82	□□□□□ -1.64
SEN1	YLR430W	NDL1	Q06568	189 aa		4.82	□□□□□ -1.64
SEN1	YLR430W	SNQ2	P32568	1501 aa	Known RBP	4.82	□□□□□ -1.64
SEN1	YLR430W	SPT5	P27692	1063 aa	Known RBP	4.82	□□□□□ -1.64
SEN1	YLR430W	IAH1	P41734	238 aa		4.82	□□□□□ -1.64
SEN1	YLR430W	RAD50	P12753	1312 aa		4.82	□□□□□ -1.64
SEN1	YLR430W	ORC1	P54784	914 aa	Predicted RBP	4.82	□□□□□ -1.64
SEN1	YLR430W	YOR389W	Q08912	624 aa		4.82	□□□□□ -1.64
SEN1	YLR430W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	4.82	□□□□□ -1.64	not detected
SEN1	YLR430W	GLE1	Q12315	538 aa		4.82	□□□□□ -1.64
SEN1	YLR430W	RIM101	P33400	625 aa		4.82	□□□□□ -1.64
SEN1	YLR430W	RVS167	P39743	482 aa	Known RBP	4.82	□□□□□ -1.64
SEN1	YLR430W	MGA2	P40578	1113 aa		4.82	□□□□□ -1.64
SEN1	YLR430W	GIN4	Q12263	1142 aa		4.82	□□□□□ -1.64
SEN1	YLR430W	BPT1	P14772	1559 aa		4.82	□□□□□ -1.64
SEN1	YLR430W	SPT16	P32558	1035 aa	Known RBP	4.82	□□□□□ -1.64
SEN1	YLR430W	SIN3	P22579	1536 aa		4.81	□□□□□ -1.64
SEN1	YLR430W	MET5	P47169	1442 aa		4.81	□□□□□ -1.64
SEN1	YLR430W	HSP104	P31539	908 aa	Known RBP	4.81	□□□□□ -1.64
SEN1	YLR430W	RSM25	P40496	264 aa		4.81	□□□□□ -1.64
SEN1	YLR430W	PUP2	P32379	260 aa		4.81	□□□□□ -1.64
SEN1	YLR430W	MRPS28	P21771	286 aa		4.81	□□□□□ -1.64
SEN1	YLR430W	PET100	P38958	111 aa		4.81	□□□□□ -1.64
SEN1	YLR430W	SUI2	P20459	304 aa	Known RBP	4.8	□□□□□ -1.64
SEN1	YLR430W	BDH2	P39713	417 aa		4.8	□□□□□ -1.64
SEN1	YLR430W	TAF13	P11747	167 aa		4.8	□□□□□ -1.64
SEN1	YLR430W	HST1	P53685	503 aa		4.8	□□□□□ -1.64
SEN1	YLR430W	PUF6	Q04373	656 aa	Known RBP	4.8	□□□□□ -1.64
SEN1	YLR430W	PEA2	P40091	420 aa		4.8	□□□□□ -1.64
SEN1	YLR430W	KEX1	P09620	729 aa		4.79	□□□□□ -1.64
SEN1	YLR430W	JJJ1	P53863	590 aa		4.79	□□□□□ -1.64
SEN1	YLR430W	ARR1	Q06596	294 aa		4.79	□□□□□ -1.64
SEN1	YLR430W	RFC1	P38630	861 aa	Known RBP	4.79	□□□□□ -1.64
SEN1	YLR430W	SPO19	Q03029	223 aa		4.79	□□□□□ -1.64
SEN1	YLR430W	EXO84	P38261	753 aa		4.79	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 15.1 ms