RNA–Protein interactions for RNA: YLR430W

SEN1, Transcript of Presumed helicase and subunit of the Nrd1 complex (Nrd1p-Nab3p-Sen1p), yeast

Gene SEN1, Length 6,696 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEN1	YLR430W	BFR2	Q06631	534 aa	Known RBP	6.49	□□□□□ -1.37
SEN1	YLR430W	RQC2	Q12532	1038 aa	Known RBP	6.42	□□□□□ -1.38
SEN1	YLR430W	NOP2	P40991	618 aa	Known RBP	6.14	□□□□□ -1.43
SEN1	YLR430W	CAB3	P36076	571 aa		6	□□□□□ -1.45
SEN1	YLR430W	EBP2	P36049	427 aa	Known RBP	5.92	□□□□□ -1.46
SEN1	YLR430W	SKI3	P17883	1432 aa	Known RBP	5.85	□□□□□ -1.47
SEN1	YLR430W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	5.83	□□□□□ -1.48	not detected
SEN1	YLR430W	SPA2	P23201	1466 aa	Known RBP	5.79	□□□□□ -1.48
SEN1	YLR430W	URN1	Q06525	465 aa	Known RBP	5.76	□□□□□ -1.49
SEN1	YLR430W	SIS2	P36024	562 aa		5.74	□□□□□ -1.49
SEN1	YLR430W	SSN2	P38931	1420 aa		5.67	□□□□□ -1.5
SEN1	YLR430W	DRS1	P32892	752 aa	Known RBP	5.66	□□□□□ -1.5
SEN1	YLR430W	SGS1	P35187	1447 aa		5.64	□□□□□ -1.51
SEN1	YLR430W	ENP1	P38333	483 aa	Known RBP	5.64	□□□□□ -1.51
SEN1	YLR430W	MNN4	P36044	1178 aa		5.61	□□□□□ -1.51
SEN1	YLR430W	YPR148C	Q06523	435 aa		5.61	□□□□□ -1.51
SEN1	YLR430W	TAF7	Q05021	590 aa		5.59	□□□□□ -1.51
SEN1	YLR430W	TCB2	P48231	1178 aa		5.59	□□□□□ -1.52
SEN1	YLR430W	TFA1	P36100	482 aa		5.56	□□□□□ -1.52
SEN1	YLR430W	RPS0B	P46654	252 aa	Known RBP	5.51	□□□□□ -1.53
SEN1	YLR430W	QCR6	P00127	147 aa		5.51	□□□□□ -1.53
SEN1	YLR430W	TCB3	Q03640	1545 aa	Known RBP	5.5	□□□□□ -1.53
SEN1	YLR430W	YFR016C	P43597	1233 aa	Known RBP	5.5	□□□□□ -1.53
SEN1	YLR430W	SEC3	P33332	1336 aa	Known RBP	5.45	□□□□□ -1.54
SEN1	YLR430W	AIM44	Q99299	758 aa		5.43	□□□□□ -1.54
SEN1	YLR430W	LEO1	P38439	464 aa		5.43	□□□□□ -1.54
SEN1	YLR430W	POL5	P39985	1022 aa	Known RBP	5.43	□□□□□ -1.54
SEN1	YLR430W	CLC1	P17891	233 aa		5.42	□□□□□ -1.54
SEN1	YLR430W	STH1	P32597	1359 aa		5.42	□□□□□ -1.54
SEN1	YLR430W	AVT3	P36062	692 aa		5.42	□□□□□ -1.54
SEN1	YLR430W	YRB30	P53107	440 aa	Predicted RBP	5.41	□□□□□ -1.54
SEN1	YLR430W	RLF2	Q12495	606 aa		5.41	□□□□□ -1.54
SEN1	YLR430W	RIX1	P38883	763 aa	Predicted RBP	5.4	□□□□□ -1.55
SEN1	YLR430W	EAF7	P53911	425 aa	Known RBP	5.4	□□□□□ -1.55
SEN1	YLR430W	SPP41	P38904	1435 aa		5.4	□□□□□ -1.55
SEN1	YLR430W	INO80	P53115	1489 aa		5.38	□□□□□ -1.55
SEN1	YLR430W	MMS22	Q06164	1454 aa		5.38	□□□□□ -1.55
SEN1	YLR430W	NOP53	Q12080	455 aa	Known RBP	5.37	□□□□□ -1.55
SEN1	YLR430W	CHD1	P32657	1468 aa		5.37	□□□□□ -1.55
SEN1	YLR430W	FPR3	P38911	411 aa	Known RBP	5.37	□□□□□ -1.55
SEN1	YLR430W	DEF1	P35732	738 aa	Known RBP	5.34	□□□□□ -1.55
SEN1	YLR430W	IME2	P32581	645 aa		5.33	□□□□□ -1.56
SEN1	YLR430W	PRS1	P32895	427 aa	Known RBP	5.33	□□□□□ -1.56
SEN1	YLR430W	CWC22	P53333	577 aa	Known RBP	5.33	□□□□□ -1.56
SEN1	YLR430W	RNA1	P11745	407 aa	Known RBP	5.33	□□□□□ -1.56
SEN1	YLR430W	SPT7	P35177	1332 aa		5.32	□□□□□ -1.56
SEN1	YLR430W	DIP2	Q12220	943 aa	Predicted RBP	5.31	□□□□□ -1.56
SEN1	YLR430W	YGR130C	P53278	816 aa		5.3	□□□□□ -1.56
SEN1	YLR430W	IKI3	Q06706	1349 aa	Known RBP	5.3	□□□□□ -1.56
SEN1	YLR430W	UFD4	P33202	1483 aa		5.3	□□□□□ -1.56
SEN1	YLR430W	FUN12	P39730	1002 aa	Known RBP	5.29	□□□□□ -1.56
SEN1	YLR430W	KRI1	P42846	591 aa	Known RBP	5.29	□□□□□ -1.56
SEN1	YLR430W	NUG1	P40010	520 aa	Known RBP	5.28	□□□□□ -1.56
SEN1	YLR430W	ECM5	Q03214	1411 aa		5.28	□□□□□ -1.56
SEN1	YLR430W	HSP82	P02829	709 aa	Known RBP	5.28	□□□□□ -1.56
SEN1	YLR430W	RSE1	Q04693	1361 aa	Known RBP	5.27	□□□□□ -1.57
SEN1	YLR430W	FPR4	Q06205	392 aa	Predicted RBP	5.27	□□□□□ -1.57
SEN1	YLR430W	SNF7	P39929	240 aa	Known RBP	5.25	□□□□□ -1.57
SEN1	YLR430W	RPC31	P17890	251 aa		5.25	□□□□□ -1.57
SEN1	YLR430W	OPY1	P38271	328 aa		5.24	□□□□□ -1.57
SEN1	YLR430W	PAF1	P38351	445 aa		5.23	□□□□□ -1.57
SEN1	YLR430W	ENV11	P53246	860 aa		5.23	□□□□□ -1.57
SEN1	YLR430W	NOP58	Q12499	511 aa	Known RBP	5.22	□□□□□ -1.57
SEN1	YLR430W	XRN1	P22147	1528 aa	Known RBP	5.22	□□□□□ -1.57
SEN1	YLR430W	SPT2	P06843	333 aa	Predicted RBP	5.22	□□□□□ -1.57
SEN1	YLR430W	SAS10	Q12136	610 aa	Predicted RBP	5.21	□□□□□ -1.57
SEN1	YLR430W	PLP2	Q12017	286 aa		5.21	□□□□□ -1.58
SEN1	YLR430W	NMD2	P38798	1089 aa	Known RBP	5.19	□□□□□ -1.58
SEN1	YLR430W	TRM732	Q03496	1420 aa		5.19	□□□□□ -1.58
SEN1	YLR430W	MTC1	P47018	478 aa	Known RBP	5.19	□□□□□ -1.58
SEN1	YLR430W	ROX1	P25042	368 aa		5.19	□□□□□ -1.58
SEN1	YLR430W	BUD4	P47136	1447 aa		5.18	□□□□□ -1.58
SEN1	YLR430W	SPT21	P35209	758 aa		5.18	□□□□□ -1.58
SEN1	YLR430W	SPC110	P32380	944 aa		5.18	□□□□□ -1.58
SEN1	YLR430W	SRB8	P25648	1427 aa		5.18	□□□□□ -1.58
SEN1	YLR430W	YTA7	P40340	1379 aa		5.17	□□□□□ -1.58
SEN1	YLR430W	TOP2	P06786	1428 aa	Known RBP	5.16	□□□□□ -1.58
SEN1	YLR430W	RTT106	P40161	455 aa		5.16	□□□□□ -1.58
SEN1	YLR430W	CFT1	Q06632	1357 aa	Known RBP	5.16	□□□□□ -1.58
SEN1	YLR430W	SMC3	P47037	1230 aa		5.16	□□□□□ -1.58
SEN1	YLR430W	PSH1	Q12161	406 aa		5.15	□□□□□ -1.59
SEN1	YLR430W	MSH4	P40965	878 aa	Predicted RBP	5.14	□□□□□ -1.59
SEN1	YLR430W	LEU3	P08638	886 aa		5.13	□□□□□ -1.59
SEN1	YLR430W	SMC4	Q12267	1418 aa		5.13	□□□□□ -1.59
SEN1	YLR430W	NAP1	P25293	417 aa	Known RBP	5.12	□□□□□ -1.59
SEN1	YLR430W	ABP1	P15891	592 aa	Known RBP	5.12	□□□□□ -1.59
SEN1	YLR430W	YIR014W	P40570	242 aa		5.12	□□□□□ -1.59
SEN1	YLR430W	SSM4	P40318	1319 aa		5.11	□□□□□ -1.59
SEN1	YLR430W	PIL1	P53252	339 aa	Known RBP	5.11	□□□□□ -1.59
SEN1	YLR430W	CBF5	P33322	483 aa	Known RBP RIP-Chip data	5.1	□□□□□ -1.59	not detected
SEN1	YLR430W	MMS1	Q06211	1407 aa		5.1	□□□□□ -1.59
SEN1	YLR430W	YLR419W	Q06698	1435 aa	Known RBP	5.1	□□□□□ -1.59
SEN1	YLR430W	EDE1	P34216	1381 aa		5.1	□□□□□ -1.59
SEN1	YLR430W	CTR9	P89105	1077 aa		5.1	□□□□□ -1.59
SEN1	YLR430W	SLN1	P39928	1220 aa	Predicted RBP	5.1	□□□□□ -1.59
SEN1	YLR430W	NOT3	P06102	836 aa	Known RBP	5.09	□□□□□ -1.59
SEN1	YLR430W	YNL011C	P53980	444 aa		5.09	□□□□□ -1.59
SEN1	YLR430W	DSN1	P40568	576 aa		5.08	□□□□□ -1.6
SEN1	YLR430W	VPS24	P36095	224 aa	Known RBP	5.08	□□□□□ -1.6
SEN1	YLR430W	PRP3	Q03338	469 aa	Predicted RBP	5.08	□□□□□ -1.6

Retrieved 100 of 5,963 RNA–protein pairs in 31.3 ms