RNA–Protein interactions for RNA: YFR050C

PRE4, Transcript of Beta 7 subunit of the 20S proteasome, yeast

Gene PRE4, Length 801 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRE4	YFR050C	ULI1	P43604	169 aa		4.77	□□□□□ -1.65
PRE4	YFR050C	TOP2	P06786	1428 aa	Known RBP	4.77	□□□□□ -1.65
PRE4	YFR050C	RCR1	P38212	213 aa		4.76	□□□□□ -1.65
PRE4	YFR050C	YMR1	P47147	688 aa	Known RBP RIP-Chip data	4.76	□□□□□ -1.65	not detected
PRE4	YFR050C	GTT3	P39996	337 aa		4.75	□□□□□ -1.65
PRE4	YFR050C	PIB1	Q06651	286 aa		4.75	□□□□□ -1.65
PRE4	YFR050C	ENV9	Q08651	330 aa		4.75	□□□□□ -1.65
PRE4	YFR050C	BUD3	P25558	1636 aa		4.75	□□□□□ -1.65
PRE4	YFR050C	YAP3	P38749	330 aa		4.74	□□□□□ -1.65
PRE4	YFR050C	SNT2	P53127	1403 aa		4.73	□□□□□ -1.65
PRE4	YFR050C	SDH2	P21801	266 aa		4.73	□□□□□ -1.65
PRE4	YFR050C	DBP1	P24784	617 aa	Known RBP	4.73	□□□□□ -1.65
PRE4	YFR050C	VPS29	P38759	282 aa		4.73	□□□□□ -1.65
PRE4	YFR050C	YMR196W	Q04336	1088 aa		4.72	□□□□□ -1.65
PRE4	YFR050C	TY3B-G	Q99315	1547 aa		4.7	□□□□□ -1.66
PRE4	YFR050C	RAM2	P29703	316 aa		4.69	□□□□□ -1.66
PRE4	YFR050C	STS1	P38637	319 aa		4.69	□□□□□ -1.66
PRE4	YFR050C	MET10	P39692	1035 aa		4.69	□□□□□ -1.66
PRE4	YFR050C	YBL086C	P38177	466 aa		4.68	□□□□□ -1.66
PRE4	YFR050C	IQG1	Q12280	1495 aa		4.68	□□□□□ -1.66
PRE4	YFR050C	MAK11	P20484	414 aa	Known RBP	4.67	□□□□□ -1.66
PRE4	YFR050C	SSA4	P22202	642 aa	Known RBP	4.67	□□□□□ -1.66
PRE4	YFR050C	MYO4	P32492	1471 aa		4.67	□□□□□ -1.66
PRE4	YFR050C	RTG1	P32607	177 aa		4.66	□□□□□ -1.66
PRE4	YFR050C	RGA2	Q06407	1009 aa		4.66	□□□□□ -1.66
PRE4	YFR050C	YOR1	P53049	1477 aa		4.64	□□□□□ -1.67
PRE4	YFR050C	BCK1	Q01389	1478 aa		4.64	□□□□□ -1.67
PRE4	YFR050C	STU1	P38198	1513 aa		4.64	□□□□□ -1.67
PRE4	YFR050C	VMA1	P17255	1071 aa	Known RBP	4.64	□□□□□ -1.67
PRE4	YFR050C	MSB4	Q12317	492 aa		4.63	□□□□□ -1.67
PRE4	YFR050C	CHC1	P22137	1653 aa	Known RBP	4.63	□□□□□ -1.67
PRE4	YFR050C	TSC11	P40061	1430 aa		4.63	□□□□□ -1.67
PRE4	YFR050C	TRP5	P00931	707 aa	Known RBP	4.62	□□□□□ -1.67
PRE4	YFR050C	DMA1	P38823	416 aa		4.62	□□□□□ -1.67
PRE4	YFR050C	DUS1	P53759	423 aa	Known RBP	4.62	□□□□□ -1.67
PRE4	YFR050C	NCR1	Q12200	1170 aa		4.62	□□□□□ -1.67
PRE4	YFR050C	HAP1	P0CE41	1502 aa		4.62	□□□□□ -1.67
PRE4	YFR050C	VTH1	P40438	1549 aa		4.61	□□□□□ -1.67
PRE4	YFR050C	VTH2	P40890	1549 aa		4.61	□□□□□ -1.67
PRE4	YFR050C	COQ8	P27697	501 aa		4.6	□□□□□ -1.67
PRE4	YFR050C	SET4	P42948	560 aa		4.6	□□□□□ -1.67
PRE4	YFR050C	CTH1	P47976	325 aa		4.6	□□□□□ -1.67
PRE4	YFR050C	YOL036W	Q08206	761 aa		4.6	□□□□□ -1.67
PRE4	YFR050C	SSN2	P38931	1420 aa		4.6	□□□□□ -1.67
PRE4	YFR050C	YBT1	P32386	1661 aa		4.59	□□□□□ -1.67
PRE4	YFR050C	TEL1	P38110	2787 aa		4.59	□□□□□ -1.67
PRE4	YFR050C	PUS5	Q06244	254 aa		4.59	□□□□□ -1.67
PRE4	YFR050C	TY1B-NL2	Q99337	1749 aa	Known RBP	4.59	□□□□□ -1.67
PRE4	YFR050C	EAP1	P36041	632 aa	Known RBP	4.58	□□□□□ -1.68
PRE4	YFR050C	UGA2	P38067	497 aa		4.58	□□□□□ -1.68
PRE4	YFR050C	MLP2	P40457	1679 aa		4.57	□□□□□ -1.68
PRE4	YFR050C	YTA7	P40340	1379 aa		4.57	□□□□□ -1.68
PRE4	YFR050C	SEC61	P32915	480 aa		4.57	□□□□□ -1.68
PRE4	YFR050C	BCK2	P33306	851 aa		4.57	□□□□□ -1.68
PRE4	YFR050C	SET1	P38827	1080 aa	Known RBP	4.57	□□□□□ -1.68
PRE4	YFR050C	YNL035C	P53962	389 aa	Known RBP	4.57	□□□□□ -1.68
PRE4	YFR050C	SAM3	Q08986	587 aa		4.57	□□□□□ -1.68
PRE4	YFR050C	GYP5	Q12344	894 aa		4.57	□□□□□ -1.68
PRE4	YFR050C	PDR12	Q02785	1511 aa		4.56	□□□□□ -1.68
PRE4	YFR050C	ATH1	P48016	1211 aa		4.56	□□□□□ -1.68
PRE4	YFR050C	GRE2	Q12068	342 aa	Known RBP	4.56	□□□□□ -1.68
PRE4	YFR050C	PTC3	P34221	468 aa	Known RBP	4.55	□□□□□ -1.68
PRE4	YFR050C	EDS1	P38073	919 aa		4.55	□□□□□ -1.68
PRE4	YFR050C	DCW1	P36091	449 aa		4.54	□□□□□ -1.68
PRE4	YFR050C	HTA1	P04911	132 aa	Known RBP	4.53	□□□□□ -1.68
PRE4	YFR050C	HTA2	P04912	132 aa		4.53	□□□□□ -1.68
PRE4	YFR050C	PEX21	P50091	288 aa		4.53	□□□□□ -1.68
PRE4	YFR050C	TAO3	P40468	2376 aa		4.53	□□□□□ -1.68
PRE4	YFR050C	GCN2	P15442	1659 aa		4.52	□□□□□ -1.69
PRE4	YFR050C	YVH1	Q02256	364 aa	Known RBP	4.52	□□□□□ -1.69
PRE4	YFR050C	NOP53	Q12080	455 aa	Known RBP	4.52	□□□□□ -1.69
PRE4	YFR050C	ENT1	Q12518	454 aa		4.52	□□□□□ -1.69
PRE4	YFR050C	PDR11	P40550	1411 aa		4.52	□□□□□ -1.69
PRE4	YFR050C	NUP157	P40064	1391 aa	Known RBP	4.52	□□□□□ -1.69
PRE4	YFR050C	YRF1-2	P40105	1681 aa		4.51	□□□□□ -1.69
PRE4	YFR050C	GUT1	P32190	709 aa		4.51	□□□□□ -1.69
PRE4	YFR050C	DAN4	P47179	1161 aa		4.51	□□□□□ -1.69
PRE4	YFR050C	MAL31	P38156	614 aa		4.5	□□□□□ -1.69
PRE4	YFR050C	SAP30	P38429	201 aa		4.5	□□□□□ -1.69
PRE4	YFR050C	IFH1	P39520	1085 aa		4.5	□□□□□ -1.69
PRE4	YFR050C	CHL1	P22516	861 aa	Predicted RBP	4.49	□□□□□ -1.69
PRE4	YFR050C	UBP1	P25037	809 aa		4.49	□□□□□ -1.69
PRE4	YFR050C	IMH1	Q06704	911 aa	Known RBP	4.49	□□□□□ -1.69
PRE4	YFR050C	TOR2	P32600	2474 aa	Known RBP	4.49	□□□□□ -1.69
PRE4	YFR050C	VMR1	P38735	1592 aa		4.48	□□□□□ -1.69
PRE4	YFR050C	SSA2	P10592	639 aa	Known RBP	4.48	□□□□□ -1.69
PRE4	YFR050C	YEL023C	P39992	682 aa		4.48	□□□□□ -1.69
PRE4	YFR050C	SNQ2	P32568	1501 aa	Known RBP	4.47	□□□□□ -1.69
PRE4	YFR050C	PRE3	P38624	215 aa		4.47	□□□□□ -1.69
PRE4	YFR050C	LYS4	P49367	693 aa	Predicted RBP	4.47	□□□□□ -1.69
PRE4	YFR050C	NUP188	P52593	1655 aa	Known RBP	4.47	□□□□□ -1.69
PRE4	YFR050C	TFG1	P41895	735 aa	Predicted RBP	4.46	□□□□□ -1.7
PRE4	YFR050C	JIP4	Q03361	876 aa		4.46	□□□□□ -1.7
PRE4	YFR050C	YDR344C	Q05510	147 aa		4.46	□□□□□ -1.7
PRE4	YFR050C	VPS70	P47161	811 aa		4.45	□□□□□ -1.7
PRE4	YFR050C	POM152	P39685	1337 aa		4.45	□□□□□ -1.7
PRE4	YFR050C	PTC4	P38089	393 aa		4.44	□□□□□ -1.7
PRE4	YFR050C	RGA1	P39083	1007 aa		4.44	□□□□□ -1.7
PRE4	YFR050C	YDL129W	Q07555	291 aa		4.44	□□□□□ -1.7
PRE4	YFR050C	IML1	P47170	1584 aa		4.44	□□□□□ -1.7

Retrieved 100 of 5,963 RNA–protein pairs in 24.4 ms