RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	SLX8	P40072	274 aa		7.7	□□□□□ -1.18
CAF16	YFL028C	VNX1	P42839	908 aa		7.7	□□□□□ -1.18
CAF16	YFL028C	PML39	Q03760	334 aa		7.7	□□□□□ -1.18
CAF16	YFL028C	TTI1	P36097	1038 aa		7.69	□□□□□ -1.18
CAF16	YFL028C	TCB3	Q03640	1545 aa	Known RBP	7.68	□□□□□ -1.18
CAF16	YFL028C	MPC54	Q08550	464 aa		7.68	□□□□□ -1.18
CAF16	YFL028C	SPP1	Q03012	353 aa		7.67	□□□□□ -1.18
CAF16	YFL028C	PEX29	Q03370	554 aa		7.67	□□□□□ -1.18
CAF16	YFL028C	YNL115C	P53925	644 aa		7.66	□□□□□ -1.18
CAF16	YFL028C	TY1B-DR4	Q07793	1604 aa		7.66	□□□□□ -1.18
CAF16	YFL028C	ENO2	P00925	437 aa	Known RBP	7.65	□□□□□ -1.18
CAF16	YFL028C	SUP45	P12385	437 aa	Known RBP	7.65	□□□□□ -1.18
CAF16	YFL028C	YDJ1	P25491	409 aa	Known RBP	7.65	□□□□□ -1.18
CAF16	YFL028C	LAM6	Q08001	693 aa		7.65	□□□□□ -1.18
CAF16	YFL028C	RSC30	P38781	883 aa		7.64	□□□□□ -1.19
CAF16	YFL028C	YNL035C	P53962	389 aa	Known RBP	7.64	□□□□□ -1.19
CAF16	YFL028C	RPL34A	P87262	121 aa	Predicted RBP	7.64	□□□□□ -1.19
CAF16	YFL028C	ISU2	Q12056	156 aa		7.64	□□□□□ -1.19
CAF16	YFL028C	ENO1	P00924	437 aa	Known RBP	7.63	□□□□□ -1.19
CAF16	YFL028C	MAK16	P10962	306 aa	Predicted RBP	7.63	□□□□□ -1.19
CAF16	YFL028C	SPT5	P27692	1063 aa	Known RBP	7.63	□□□□□ -1.19
CAF16	YFL028C	IOC2	Q12072	812 aa		7.63	□□□□□ -1.19
CAF16	YFL028C	KEX2	P13134	814 aa		7.62	□□□□□ -1.19
CAF16	YFL028C	TRM1	P15565	570 aa	Known RBP	7.62	□□□□□ -1.19
CAF16	YFL028C	RTF1	P53064	558 aa		7.62	□□□□□ -1.19
CAF16	YFL028C	NOB1	Q08444	459 aa	Known RBP	7.62	□□□□□ -1.19
CAF16	YFL028C	NMA111	P53920	997 aa		7.61	□□□□□ -1.19
CAF16	YFL028C	NOP8	Q08287	484 aa	Predicted RBP	7.61	□□□□□ -1.19
CAF16	YFL028C	NUD1	P32336	851 aa		7.6	□□□□□ -1.19
CAF16	YFL028C	RTG1	P32607	177 aa		7.6	□□□□□ -1.19
CAF16	YFL028C	SWR1	Q05471	1514 aa		7.6	□□□□□ -1.19
CAF16	YFL028C	ERF2	Q06551	359 aa		7.59	□□□□□ -1.19
CAF16	YFL028C	LDB19	Q12502	818 aa		7.59	□□□□□ -1.19
CAF16	YFL028C	RIM21	P48565	533 aa		7.58	□□□□□ -1.2
CAF16	YFL028C	MRX10	Q05648	414 aa		7.58	□□□□□ -1.2
CAF16	YFL028C	NPL4	P33755	580 aa		7.57	□□□□□ -1.2
CAF16	YFL028C	PUS6	P53294	404 aa		7.57	□□□□□ -1.2
CAF16	YFL028C	TBF1	Q02457	562 aa		7.57	□□□□□ -1.2
CAF16	YFL028C	YML083C	Q04526	418 aa		7.57	□□□□□ -1.2
CAF16	YFL028C	PUP1	P25043	261 aa		7.56	□□□□□ -1.2
CAF16	YFL028C	SIS2	P36024	562 aa		7.56	□□□□□ -1.2
CAF16	YFL028C	UBP9	P39967	754 aa		7.56	□□□□□ -1.2
CAF16	YFL028C	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	7.56	□□□□□ -1.2	not detected
CAF16	YFL028C	PDR1	P12383	1068 aa		7.55	□□□□□ -1.2
CAF16	YFL028C	SEC61	P32915	480 aa		7.55	□□□□□ -1.2
CAF16	YFL028C	TFG1	P41895	735 aa	Predicted RBP	7.54	□□□□□ -1.2
CAF16	YFL028C	CDC3	P32457	520 aa	Known RBP	7.53	□□□□□ -1.2
CAF16	YFL028C	TGL4	P36165	910 aa		7.53	□□□□□ -1.2
CAF16	YFL028C	YPP1	P46951	817 aa		7.53	□□□□□ -1.2
CAF16	YFL028C	NAF1	P53919	492 aa	Known RBP	7.52	□□□□□ -1.21
CAF16	YFL028C	MCM16	Q12262	181 aa		7.52	□□□□□ -1.21
CAF16	YFL028C	KTR7	P40504	517 aa		7.51	□□□□□ -1.21
CAF16	YFL028C	STR2	P47164	639 aa		7.51	□□□□□ -1.21
CAF16	YFL028C	ISM1	P48526	1002 aa		7.51	□□□□□ -1.21
CAF16	YFL028C	YDL206W	Q12424	762 aa		7.51	□□□□□ -1.21
CAF16	YFL028C	ISF1	P32488	338 aa		7.5	□□□□□ -1.21
CAF16	YFL028C	YDL129W	Q07555	291 aa		7.5	□□□□□ -1.21
CAF16	YFL028C	NCR1	Q12200	1170 aa		7.5	□□□□□ -1.21
CAF16	YFL028C	GCD11	P32481	527 aa	Known RBP	7.49	□□□□□ -1.21
CAF16	YFL028C	HAP5	Q02516	242 aa		7.49	□□□□□ -1.21
CAF16	YFL028C	DNA2	P38859	1522 aa		7.48	□□□□□ -1.21
CAF16	YFL028C	RDS2	P19541	446 aa	Known RBP	7.48	□□□□□ -1.21
CAF16	YFL028C	SLD2	P34252	453 aa		7.48	□□□□□ -1.21
CAF16	YFL028C	TUB4	P53378	473 aa		7.48	□□□□□ -1.21
CAF16	YFL028C	ECM23	Q02710	187 aa		7.48	□□□□□ -1.21
CAF16	YFL028C	PEP12	P32854	288 aa		7.47	□□□□□ -1.21
CAF16	YFL028C	ENV9	Q08651	330 aa		7.47	□□□□□ -1.21
CAF16	YFL028C	EMP47	P43555	445 aa		7.46	□□□□□ -1.22
CAF16	YFL028C	AGE1	Q04412	482 aa		7.46	□□□□□ -1.22
CAF16	YFL028C	HAT1	Q12341	374 aa		7.46	□□□□□ -1.22
CAF16	YFL028C	TY1A-DR4	O74302	440 aa		7.45	□□□□□ -1.22
CAF16	YFL028C	TY1A-H	P0C2I4	478 aa	Known RBP	7.45	□□□□□ -1.22
CAF16	YFL028C	TY1A-A	P0CX57	440 aa		7.45	□□□□□ -1.22
CAF16	YFL028C	TY1A-PR1	P0CX58	440 aa		7.45	□□□□□ -1.22
CAF16	YFL028C	TY1A-OR	P0CX59	440 aa		7.45	□□□□□ -1.22
CAF16	YFL028C	TY1A-PR2	P0CX60	440 aa		7.45	□□□□□ -1.22
CAF16	YFL028C	TY1A-DR5	P0CX65	440 aa		7.45	□□□□□ -1.22
CAF16	YFL028C	TY1A-ER2	P0CX66	440 aa		7.45	□□□□□ -1.22
CAF16	YFL028C	TY1A-GR3	P0CX67	440 aa		7.45	□□□□□ -1.22
CAF16	YFL028C	TY1A-LR1	P0CX68	440 aa		7.45	□□□□□ -1.22
CAF16	YFL028C	TY1A-MR2	P0CX69	440 aa		7.45	□□□□□ -1.22
CAF16	YFL028C	RAM1	P22007	431 aa		7.45	□□□□□ -1.22
CAF16	YFL028C	TY1A-JR2	P47099	440 aa		7.45	□□□□□ -1.22
CAF16	YFL028C	TY1A-DR1	Q03856	440 aa		7.45	□□□□□ -1.22
CAF16	YFL028C	TY1A-ML1	Q04706	440 aa	Known RBP	7.45	□□□□□ -1.22
CAF16	YFL028C	TY1A-BR	Q12217	440 aa		7.45	□□□□□ -1.22
CAF16	YFL028C	TY1A-NL2	Q12470	440 aa		7.45	□□□□□ -1.22
CAF16	YFL028C	TY1A-GR2	Q12485	440 aa		7.45	□□□□□ -1.22
CAF16	YFL028C	HSL1	P34244	1518 aa		7.45	□□□□□ -1.22
CAF16	YFL028C	SSF1	P38789	453 aa	Predicted RBP	7.44	□□□□□ -1.22
CAF16	YFL028C	SEC2	P17065	759 aa		7.43	□□□□□ -1.22
CAF16	YFL028C	SAP30	P38429	201 aa		7.43	□□□□□ -1.22
CAF16	YFL028C	RPA14	P50106	137 aa		7.43	□□□□□ -1.22
CAF16	YFL028C	YDR344C	Q05510	147 aa		7.43	□□□□□ -1.22
CAF16	YFL028C	TEC1	P18412	486 aa		7.42	□□□□□ -1.22
CAF16	YFL028C	ARH1	P48360	493 aa		7.42	□□□□□ -1.22
CAF16	YFL028C	SPT6	P23615	1451 aa	Known RBP	7.42	□□□□□ -1.22
CAF16	YFL028C	UBX7	P38349	436 aa		7.41	□□□□□ -1.22
CAF16	YFL028C	MRX12	P47084	519 aa		7.41	□□□□□ -1.22
CAF16	YFL028C	BUD20	Q08004	166 aa	Predicted RBP	7.41	□□□□□ -1.22

Retrieved 100 of 5,963 RNA–protein pairs in 6.6 ms