RNA–Protein interactions for RNA: YDR077W

SED1, Transcript of Major stress-induced structural GPI-cell wall glycoprotein, yeastyeast

Gene SED1, Length 1,017 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SED1YDR077W YNR029CP53729 429 aaKnown RBP12.59□□□□□ -0.39
SED1YDR077W YMR196WQ04336 1088 aa12.57□□□□□ -0.4
SED1YDR077W PSD2P53037 1138 aaKnown RBP12.56□□□□□ -0.4
SED1YDR077W PSK1P31374 1356 aa12.56□□□□□ -0.4
SED1YDR077W RCM1P53972 490 aa12.55□□□□□ -0.4
SED1YDR077W ISW2Q08773 1120 aa12.55□□□□□ -0.4
SED1YDR077W LEU3P08638 886 aa12.52□□□□□ -0.41
SED1YDR077W FKH1P40466 484 aa12.51□□□□□ -0.41
SED1YDR077W YML133CQ03099 1374 aa12.49□□□□□ -0.41
SED1YDR077W YLL067CQ07888 1374 aa12.49□□□□□ -0.41
SED1YDR077W YLL066CQ99208 1374 aa12.49□□□□□ -0.41
SED1YDR077W CPS1P27614 576 aa12.49□□□□□ -0.41
SED1YDR077W RTG3P38165 486 aa12.49□□□□□ -0.41
SED1YDR077W NSR1P27476 414 aaKnown RBP RIP-Chip data12.48□□□□□ -0.41not detected
SED1YDR077W PPH3P32345 308 aa12.48□□□□□ -0.41
SED1YDR077W THI12P42883 340 aa12.46□□□□□ -0.41
SED1YDR077W THI5P43534 340 aa12.46□□□□□ -0.41
SED1YDR077W THI11P47183 340 aa12.46□□□□□ -0.41
SED1YDR077W THI13Q07748 340 aa12.46□□□□□ -0.41
SED1YDR077W YCK3P39962 524 aa12.45□□□□□ -0.42
SED1YDR077W NST1P53935 1240 aa12.43□□□□□ -0.42
SED1YDR077W RPG1P38249 964 aaKnown RBP12.42□□□□□ -0.42
SED1YDR077W LEU2P04173 364 aaPredicted RBP12.4□□□□□ -0.42
SED1YDR077W MTR4P47047 1073 aaKnown RBP12.4□□□□□ -0.42
SED1YDR077W ADE6P38972 1358 aaKnown RBP12.39□□□□□ -0.43
SED1YDR077W PDI1P17967 522 aaKnown RBP12.37□□□□□ -0.43
SED1YDR077W TY4B-HP0C2J7 1802 aa12.37□□□□□ -0.43
SED1YDR077W TY4B-JP47024 1803 aa12.37□□□□□ -0.43
SED1YDR077W RTF1P53064 558 aa12.34□□□□□ -0.43
SED1YDR077W TAP42Q04372 366 aa12.33□□□□□ -0.44
SED1YDR077W SNF2P22082 1703 aa12.33□□□□□ -0.44
SED1YDR077W YEF3P16521 1044 aaKnown RBP12.32□□□□□ -0.44
SED1YDR077W HAA1Q12753 694 aaKnown RBP12.32□□□□□ -0.44
SED1YDR077W KAR2P16474 682 aaKnown RBP12.31□□□□□ -0.44
SED1YDR077W TRK1P12685 1235 aa12.3□□□□□ -0.44
SED1YDR077W CSE4P36012 229 aa12.3□□□□□ -0.44
SED1YDR077W GRX4P32642 244 aa12.29□□□□□ -0.44
SED1YDR077W PRP43P53131 767 aaKnown RBP12.29□□□□□ -0.44
SED1YDR077W IOC4Q04213 475 aa12.28□□□□□ -0.44
SED1YDR077W RPS24AP0CX31 135 aaKnown RBP12.27□□□□□ -0.45
SED1YDR077W RPS24BP0CX32 135 aaKnown RBP12.27□□□□□ -0.45
SED1YDR077W YFR006WP43590 535 aa12.27□□□□□ -0.45
SED1YDR077W AUS1Q08409 1394 aa12.27□□□□□ -0.45
SED1YDR077W PRS1P32895 427 aaKnown RBP12.26□□□□□ -0.45
SED1YDR077W RRP5Q05022 1729 aaKnown RBP12.24□□□□□ -0.45
SED1YDR077W YRF1-2P40105 1681 aa12.23□□□□□ -0.45
SED1YDR077W RPP0P05317 312 aaKnown RBP12.22□□□□□ -0.45
SED1YDR077W HIM1Q06674 414 aa12.22□□□□□ -0.45
SED1YDR077W DPS1P04802 557 aaKnown RBP12.21□□□□□ -0.45
SED1YDR077W PTP3P40048 928 aa12.21□□□□□ -0.45
SED1YDR077W PAP2P53632 584 aaKnown RBP12.21□□□□□ -0.45
SED1YDR077W RPO41P13433 1351 aaKnown RBP12.2□□□□□ -0.46
SED1YDR077W GAS4Q08271 471 aa12.2□□□□□ -0.46
SED1YDR077W YDL144CQ07589 356 aa12.19□□□□□ -0.46
SED1YDR077W YIL177CP40434 1758 aa12.19□□□□□ -0.46
SED1YDR077W YJL225CP40889 1758 aa12.19□□□□□ -0.46
SED1YDR077W FKS3Q04952 1785 aa12.18□□□□□ -0.46
SED1YDR077W RTR1P40084 226 aaPredicted RBP12.17□□□□□ -0.46
SED1YDR077W TSR3Q12094 313 aaKnown RBP12.17□□□□□ -0.46
SED1YDR077W PRP5P21372 849 aaPredicted RBP12.16□□□□□ -0.46
SED1YDR077W PRP45P28004 379 aaPredicted RBP12.16□□□□□ -0.46
SED1YDR077W VPS27P40343 622 aaKnown RBP12.16□□□□□ -0.46
SED1YDR077W CDC45Q08032 650 aa12.16□□□□□ -0.46
SED1YDR077W RRP46P53256 223 aaPredicted RBP12.15□□□□□ -0.46
SED1YDR077W APC1P53886 1748 aa12.14□□□□□ -0.47
SED1YDR077W URB1P34241 1764 aaKnown RBP12.13□□□□□ -0.47
SED1YDR077W MPP10P47083 593 aaKnown RBP12.12□□□□□ -0.47
SED1YDR077W MSB3P48566 633 aaPredicted RBP12.1□□□□□ -0.47
SED1YDR077W SLM3Q12093 417 aa12.1□□□□□ -0.47
SED1YDR077W DIP2Q12220 943 aaPredicted RBP12.1□□□□□ -0.47
SED1YDR077W PRD1P25375 712 aa12.08□□□□□ -0.48
SED1YDR077W BUB1P41695 1021 aaKnown RBP RIP-Chip data12.07□□□□□ -0.48not detected
SED1YDR077W REB1P21538 810 aa12.06□□□□□ -0.48
SED1YDR077W AKL1P38080 1108 aaKnown RBP12.06□□□□□ -0.48
SED1YDR077W YRB30P53107 440 aaPredicted RBP12.06□□□□□ -0.48
SED1YDR077W TCB1Q12466 1186 aa12.06□□□□□ -0.48
SED1YDR077W SUI2P20459 304 aaKnown RBP12.05□□□□□ -0.48
SED1YDR077W RVB2Q12464 471 aaKnown RBP12.05□□□□□ -0.48
SED1YDR077W YRF1-4O13559 1382 aa12.05□□□□□ -0.48
SED1YDR077W RSF2P46974 1380 aa12.05□□□□□ -0.48
SED1YDR077W THI22Q06490 572 aa12.03□□□□□ -0.48
SED1YDR077W DSD1P53095 428 aa12.02□□□□□ -0.49
SED1YDR077W ENT1Q12518 454 aa12.02□□□□□ -0.49
SED1YDR077W SIR4P11978 1358 aa12.02□□□□□ -0.49
SED1YDR077W NOP2P40991 618 aaKnown RBP12.01□□□□□ -0.49
SED1YDR077W XKS1P42826 600 aa12.01□□□□□ -0.49
SED1YDR077W SAP155P43612 1002 aa12.01□□□□□ -0.49
SED1YDR077W YAH1Q12184 172 aaKnown RBP12.01□□□□□ -0.49
SED1YDR077W TPD3P31383 635 aa12□□□□□ -0.49
SED1YDR077W HEF3P53978 1044 aaKnown RBP11.98□□□□□ -0.49
SED1YDR077W HSP104P31539 908 aaKnown RBP11.97□□□□□ -0.49
SED1YDR077W APP1P53933 587 aa11.97□□□□□ -0.49
SED1YDR077W CTF4Q01454 927 aa11.97□□□□□ -0.49
SED1YDR077W RTT109Q07794 436 aa11.97□□□□□ -0.49
SED1YDR077W ENV9Q08651 330 aa11.97□□□□□ -0.49
SED1YDR077W YNL050CP53952 270 aa11.95□□□□□ -0.5
SED1YDR077W AOS1Q06624 347 aa11.95□□□□□ -0.5
SED1YDR077W NTH2P35172 780 aa11.94□□□□□ -0.5
SED1YDR077W RCR1P38212 213 aa11.94□□□□□ -0.5
SED1YDR077W NAB6Q03735 1134 aaKnown RBP RIP-Chip data11.94□□□□□ -0.5 RIP-Chip
Retrieved 100 of 5,963 RNA–protein pairs in 17.7 ms