RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	EPL1	P43572	832 aa		4.9	□□□□□ -1.63
RRP40	YOL142W	SMC3	P47037	1230 aa		4.9	□□□□□ -1.63
RRP40	YOL142W	INN1	P53901	409 aa		4.9	□□□□□ -1.63
RRP40	YOL142W	MDM1	Q01846	1127 aa		4.9	□□□□□ -1.63
RRP40	YOL142W	EKI1	Q03764	534 aa		4.9	□□□□□ -1.63
RRP40	YOL142W	TMA64	Q04600	565 aa	Known RBP	4.9	□□□□□ -1.63
RRP40	YOL142W	FMP42	Q04991	504 aa		4.9	□□□□□ -1.63
RRP40	YOL142W	GRS2	Q06817	618 aa		4.9	□□□□□ -1.63
RRP40	YOL142W	MGR1	P25573	417 aa		4.89	□□□□□ -1.63
RRP40	YOL142W	BMH2	P34730	273 aa	Known RBP	4.89	□□□□□ -1.63
RRP40	YOL142W	MIA40	P36046	403 aa		4.89	□□□□□ -1.63
RRP40	YOL142W	RKM3	P38222	552 aa		4.89	□□□□□ -1.63
RRP40	YOL142W	OPY1	P38271	328 aa		4.89	□□□□□ -1.63
RRP40	YOL142W	NDT80	P38830	627 aa		4.89	□□□□□ -1.63
RRP40	YOL142W	YAT2	P40017	923 aa		4.89	□□□□□ -1.63
RRP40	YOL142W	INA17	Q02888	182 aa		4.89	□□□□□ -1.63
RRP40	YOL142W	VPS20	Q04272	221 aa		4.89	□□□□□ -1.63
RRP40	YOL142W	YDL218W	Q07629	317 aa		4.89	□□□□□ -1.63
RRP40	YOL142W	NDD1	Q08887	554 aa		4.89	□□□□□ -1.63
RRP40	YOL142W	NBP2	Q12163	236 aa		4.89	□□□□□ -1.63
RRP40	YOL142W	INP53	Q12271	1107 aa		4.89	□□□□□ -1.63
RRP40	YOL142W	SAM1	P10659	382 aa	Known RBP	4.88	□□□□□ -1.63
RRP40	YOL142W	GAC1	P28006	793 aa		4.88	□□□□□ -1.63
RRP40	YOL142W	SNU114	P36048	1008 aa	Known RBP	4.88	□□□□□ -1.63
RRP40	YOL142W	RXT2	P38255	430 aa		4.88	□□□□□ -1.63
RRP40	YOL142W	UIP3	P39547	235 aa		4.88	□□□□□ -1.63
RRP40	YOL142W	YIL060W	P40519	144 aa		4.88	□□□□□ -1.63
RRP40	YOL142W	SAD1	P43589	448 aa		4.88	□□□□□ -1.63
RRP40	YOL142W	YGL138C	P53122	345 aa		4.88	□□□□□ -1.63
RRP40	YOL142W	CBK1	P53894	756 aa		4.88	□□□□□ -1.63
RRP40	YOL142W	ARP5	P53946	755 aa		4.88	□□□□□ -1.63
RRP40	YOL142W	SPH1	Q06160	661 aa		4.88	□□□□□ -1.63
RRP40	YOL142W	YPL150W	Q12152	901 aa		4.88	□□□□□ -1.63
RRP40	YOL142W	TY3A-G	Q12173	290 aa		4.88	□□□□□ -1.63
RRP40	YOL142W	TY3A-I	Q99219	290 aa		4.88	□□□□□ -1.63
RRP40	YOL142W	RPL19A	P0CX82	189 aa	Known RBP	4.87	□□□□□ -1.63
RRP40	YOL142W	RPL19B	P0CX83	189 aa	Predicted RBP	4.87	□□□□□ -1.63
RRP40	YOL142W	VMA2	P16140	517 aa	Known RBP	4.87	□□□□□ -1.63
RRP40	YOL142W	HNM1	P19807	563 aa		4.87	□□□□□ -1.63
RRP40	YOL142W	UTR4	P32626	227 aa		4.87	□□□□□ -1.63
RRP40	YOL142W	ARP1	P38696	384 aa		4.87	□□□□□ -1.63
RRP40	YOL142W	YJR061W	P40355	935 aa		4.87	□□□□□ -1.63
RRP40	YOL142W	RTS2	P40962	232 aa		4.87	□□□□□ -1.63
RRP40	YOL142W	IAH1	P41734	238 aa		4.87	□□□□□ -1.63
RRP40	YOL142W	AAD10	P47182	288 aa		4.87	□□□□□ -1.63
RRP40	YOL142W	SMA1	Q02651	245 aa		4.87	□□□□□ -1.63
RRP40	YOL142W	YDR341C	Q05506	607 aa	Known RBP	4.87	□□□□□ -1.63
RRP40	YOL142W	VIP1	Q06685	1146 aa	Known RBP	4.87	□□□□□ -1.63
RRP40	YOL142W	NRT1	Q08485	598 aa		4.87	□□□□□ -1.63
RRP40	YOL142W	APL4	Q12028	832 aa		4.87	□□□□□ -1.63
RRP40	YOL142W	VPS1	P21576	704 aa	Known RBP	4.86	□□□□□ -1.63
RRP40	YOL142W	SHP1	P34223	423 aa		4.86	□□□□□ -1.63
RRP40	YOL142W	YKL050C	P35736	922 aa		4.86	□□□□□ -1.63
RRP40	YOL142W	DIA4	P38705	446 aa	Predicted RBP	4.86	□□□□□ -1.63
RRP40	YOL142W	BUR6	P40096	142 aa		4.86	□□□□□ -1.63
RRP40	YOL142W	FMS1	P50264	508 aa		4.86	□□□□□ -1.63
RRP40	YOL142W	LSB1	P53281	241 aa		4.86	□□□□□ -1.63
RRP40	YOL142W	RSF1	Q05043	376 aa		4.86	□□□□□ -1.63
RRP40	YOL142W	ADE13	Q05911	482 aa	Known RBP	4.86	□□□□□ -1.63
RRP40	YOL142W	ATG26	Q06321	1198 aa		4.86	□□□□□ -1.63
RRP40	YOL142W	LAA1	P39526	2014 aa		4.85	□□□□□ -1.63
RRP40	YOL142W	RER1	P25560	188 aa		4.85	□□□□□ -1.63
RRP40	YOL142W	PGS1	P25578	521 aa		4.85	□□□□□ -1.63
RRP40	YOL142W	PDB1	P32473	366 aa	Known RBP	4.85	□□□□□ -1.63
RRP40	YOL142W	MCR1	P36060	302 aa	Known RBP	4.85	□□□□□ -1.63
RRP40	YOL142W	PHO90	P39535	881 aa		4.85	□□□□□ -1.63
RRP40	YOL142W	MAF1	P41910	395 aa		4.85	□□□□□ -1.63
RRP40	YOL142W	FET5	P43561	622 aa		4.85	□□□□□ -1.63
RRP40	YOL142W	SIP4	P46954	829 aa		4.85	□□□□□ -1.63
RRP40	YOL142W	STR3	P53101	465 aa	Known RBP	4.85	□□□□□ -1.63
RRP40	YOL142W	RET3	P53600	189 aa		4.85	□□□□□ -1.63
RRP40	YOL142W	PSR1	Q07800	427 aa		4.85	□□□□□ -1.63
RRP40	YOL142W	ENT4	Q07872	247 aa		4.85	□□□□□ -1.63
RRP40	YOL142W	ERP3	Q12403	225 aa		4.85	□□□□□ -1.63
RRP40	YOL142W	FUM1	P08417	488 aa	Known RBP	4.84	□□□□□ -1.63
RRP40	YOL142W	CDC23	P16522	626 aa		4.84	□□□□□ -1.63
RRP40	YOL142W	GID7	P25569	745 aa		4.84	□□□□□ -1.63
RRP40	YOL142W	PRX1	P34227	261 aa	Known RBP	4.84	□□□□□ -1.63
RRP40	YOL142W	DBP7	P36120	742 aa	Known RBP	4.84	□□□□□ -1.63
RRP40	YOL142W	BZZ1	P38822	633 aa		4.84	□□□□□ -1.63
RRP40	YOL142W	DPH1	P40487	425 aa	Known RBP	4.84	□□□□□ -1.63
RRP40	YOL142W	RPS7B	P48164	190 aa	Known RBP	4.84	□□□□□ -1.63
RRP40	YOL142W	LIF1	P53150	421 aa		4.84	□□□□□ -1.63
RRP40	YOL142W	PKP2	P53170	491 aa		4.84	□□□□□ -1.63
RRP40	YOL142W	NUP100	Q02629	959 aa		4.84	□□□□□ -1.63
RRP40	YOL142W	YMR321C	Q04898	105 aa		4.84	□□□□□ -1.63
RRP40	YOL142W	YLR352W	Q06479	807 aa		4.84	□□□□□ -1.63
RRP40	YOL142W	BSC1	Q12140	328 aa		4.84	□□□□□ -1.63
RRP40	YOL142W	HSP82	P02829	709 aa	Known RBP	4.83	□□□□□ -1.64
RRP40	YOL142W	PWP1	P21304	576 aa	Known RBP	4.83	□□□□□ -1.64
RRP40	YOL142W	PPZ1	P26570	692 aa		4.83	□□□□□ -1.64
RRP40	YOL142W	DPB3	P27344	201 aa		4.83	□□□□□ -1.64
RRP40	YOL142W	RGT1	P32862	1170 aa		4.83	□□□□□ -1.64
RRP40	YOL142W	MAL33	P38157	468 aa		4.83	□□□□□ -1.64
RRP40	YOL142W	ANS1	P38832	159 aa		4.83	□□□□□ -1.64
RRP40	YOL142W	RTT107	P38850	1070 aa		4.83	□□□□□ -1.64
RRP40	YOL142W	ATG27	P46989	271 aa		4.83	□□□□□ -1.64
RRP40	YOL142W	YGL039W	P53183	348 aa	Known RBP	4.83	□□□□□ -1.64
RRP40	YOL142W	LSP1	Q12230	341 aa	Known RBP	4.83	□□□□□ -1.64
RRP40	YOL142W	CEX1	Q12453	761 aa		4.83	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 13.6 ms