RNA–Protein interactions for RNA: YHL006C

SHU1, Transcript of Component of Shu complex (aka PCSS complex), yeastyeast

Gene SHU1, Length 453 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHU1YHL006C RMI1Q02685 241 aa12.79□□□□□ -0.36
SHU1YHL006C RIF2Q06208 395 aa12.79□□□□□ -0.36
SHU1YHL006C YPR011CQ12251 326 aa12.79□□□□□ -0.36
SHU1YHL006C CRM1P30822 1084 aaKnown RBP12.78□□□□□ -0.36
SHU1YHL006C HXT4P32467 576 aa12.78□□□□□ -0.36
SHU1YHL006C KKQ8P36004 724 aa12.78□□□□□ -0.36
SHU1YHL006C MRPL15P36523 253 aa12.78□□□□□ -0.36
SHU1YHL006C RRN10P38204 145 aa12.78□□□□□ -0.36
SHU1YHL006C YHR210CP38893 341 aa12.78□□□□□ -0.36
SHU1YHL006C AXL2P38928 823 aa12.78□□□□□ -0.36
SHU1YHL006C HXT6P39003 570 aaKnown RBP12.78□□□□□ -0.36
SHU1YHL006C HXT7P39004 570 aa12.78□□□□□ -0.36
SHU1YHL006C YER034WP40022 185 aaKnown RBP12.78□□□□□ -0.36
SHU1YHL006C YNL260CP53846 198 aa12.78□□□□□ -0.36
SHU1YHL006C PRO2P54885 456 aaKnown RBP12.78□□□□□ -0.36
SHU1YHL006C SED5Q01590 340 aa12.78□□□□□ -0.36
SHU1YHL006C USA1Q03714 838 aa12.78□□□□□ -0.36
SHU1YHL006C VID22Q05934 901 aa12.78□□□□□ -0.36
SHU1YHL006C ARG4P04076 463 aaPredicted RBP12.77□□□□□ -0.37
SHU1YHL006C PRP6P19735 899 aaPredicted RBP12.77□□□□□ -0.37
SHU1YHL006C ADE1P27616 306 aa12.77□□□□□ -0.37
SHU1YHL006C YRO2P38079 344 aa12.77□□□□□ -0.37
SHU1YHL006C PHO89P38361 574 aa12.77□□□□□ -0.37
SHU1YHL006C MNL1P38888 796 aa12.77□□□□□ -0.37
SHU1YHL006C CEP3P40969 608 aa12.77□□□□□ -0.37
SHU1YHL006C ASK10P48361 1146 aa12.77□□□□□ -0.37
SHU1YHL006C IBD2P53892 351 aa12.77□□□□□ -0.37
SHU1YHL006C RSF1Q05043 376 aa12.77□□□□□ -0.37
SHU1YHL006C YLR053CQ12026 108 aa12.77□□□□□ -0.37
SHU1YHL006C IOC2Q12072 812 aa12.77□□□□□ -0.37
SHU1YHL006C HEM2P05373 342 aa12.76□□□□□ -0.37
SHU1YHL006C RPS21AP0C0V8 87 aaKnown RBP12.76□□□□□ -0.37
SHU1YHL006C YCR090CP25654 182 aaKnown RBP12.76□□□□□ -0.37
SHU1YHL006C MNT3P40549 630 aa12.76□□□□□ -0.37
SHU1YHL006C SEC27P41811 889 aaKnown RBP12.76□□□□□ -0.37
SHU1YHL006C AIF1P52923 378 aa12.76□□□□□ -0.37
SHU1YHL006C YNR021WP53723 404 aaKnown RBP12.76□□□□□ -0.37
SHU1YHL006C GIC2Q06648 383 aa12.76□□□□□ -0.37
SHU1YHL006C APC9Q12107 265 aa12.76□□□□□ -0.37
SHU1YHL006C YPL245WQ12179 454 aaKnown RBP12.76□□□□□ -0.37
SHU1YHL006C CYR1P08678 2026 aaKnown RBP12.76□□□□□ -0.37
SHU1YHL006C RPL17AP05740 184 aaKnown RBP12.75□□□□□ -0.37
SHU1YHL006C LDB16P25587 256 aa12.75□□□□□ -0.37
SHU1YHL006C VAC17P25591 423 aa12.75□□□□□ -0.37
SHU1YHL006C NFU1P32860 256 aa12.75□□□□□ -0.37
SHU1YHL006C AXL1P40851 1208 aa12.75□□□□□ -0.37
SHU1YHL006C RPL17BP46990 184 aaKnown RBP12.75□□□□□ -0.37
SHU1YHL006C MRS2Q01926 470 aa12.75□□□□□ -0.37
SHU1YHL006C ELP4Q02884 456 aaKnown RBP12.75□□□□□ -0.37
SHU1YHL006C PEX25Q02969 394 aa12.75□□□□□ -0.37
SHU1YHL006C ENT2Q05785 613 aa12.75□□□□□ -0.37
SHU1YHL006C RUD3Q12234 484 aaKnown RBP12.75□□□□□ -0.37
SHU1YHL006C BRR1Q99177 341 aaPredicted RBP12.75□□□□□ -0.37
SHU1YHL006C URA4P20051 364 aa12.74□□□□□ -0.37
SHU1YHL006C ILV6P25605 309 aaKnown RBP12.74□□□□□ -0.37
SHU1YHL006C SET3P36124 751 aa12.74□□□□□ -0.37
SHU1YHL006C COA1P40452 197 aa12.74□□□□□ -0.37
SHU1YHL006C EFM5P53200 248 aaKnown RBP12.74□□□□□ -0.37
SHU1YHL006C TEN1Q07921 160 aa12.74□□□□□ -0.37
SHU1YHL006C TRA1P38811 3744 aa12.73□□□□□ -0.37
SHU1YHL006C SPT3P06844 337 aa12.73□□□□□ -0.37
SHU1YHL006C MCM5P29496 775 aaKnown RBP12.73□□□□□ -0.37
SHU1YHL006C LYP1P32487 611 aa12.73□□□□□ -0.37
SHU1YHL006C SRB5P32585 307 aa12.73□□□□□ -0.37
SHU1YHL006C PRM2P40534 656 aa12.73□□□□□ -0.37
SHU1YHL006C YGR250CP53316 781 aaKnown RBP12.73□□□□□ -0.37
SHU1YHL006C HOS3Q02959 697 aaKnown RBP12.73□□□□□ -0.37
SHU1YHL006C SEC10Q06245 871 aa12.73□□□□□ -0.37
SHU1YHL006C CBF5P33322 483 aaKnown RBP RIP-Chip data12.72□□□□□ -0.37not detected
SHU1YHL006C RMA1P36001 430 aaKnown RBP12.72□□□□□ -0.37
SHU1YHL006C APQ12P40532 138 aa12.72□□□□□ -0.37
SHU1YHL006C VMA13P41807 478 aaKnown RBP12.72□□□□□ -0.37
SHU1YHL006C YNL058CP53947 316 aa12.72□□□□□ -0.37
SHU1YHL006C YPL066WQ12194 479 aa12.72□□□□□ -0.37
SHU1YHL006C AI3P03877 415 aa12.71□□□□□ -0.37
SHU1YHL006C CHA1P25379 360 aaKnown RBP12.71□□□□□ -0.37
SHU1YHL006C PTH2P34222 208 aa12.71□□□□□ -0.37
SHU1YHL006C CTP1P38152 299 aa12.71□□□□□ -0.37
SHU1YHL006C IKS1P47042 667 aa12.71□□□□□ -0.37
SHU1YHL006C IST1P53843 298 aaPredicted RBP12.71□□□□□ -0.37
SHU1YHL006C TDA5Q06417 326 aaKnown RBP12.71□□□□□ -0.37
SHU1YHL006C VHS3Q08438 674 aa12.71□□□□□ -0.37
SHU1YHL006C HSP42Q12329 375 aa12.71□□□□□ -0.37
SHU1YHL006C ART10P18634 518 aaKnown RBP12.7□□□□□ -0.38
SHU1YHL006C TRX3P25372 127 aa12.7□□□□□ -0.38
SHU1YHL006C APT2P36973 181 aa12.7□□□□□ -0.38
SHU1YHL006C YHB1P39676 399 aaKnown RBP12.7□□□□□ -0.38
SHU1YHL006C CAB2P40506 365 aa12.7□□□□□ -0.38
SHU1YHL006C YGL176CP46945 554 aa12.7□□□□□ -0.38
SHU1YHL006C PAN2P53010 1115 aaPredicted RBP12.7□□□□□ -0.38
SHU1YHL006C SUR7P54003 302 aa12.7□□□□□ -0.38
SHU1YHL006C MCA1Q08601 432 aa12.7□□□□□ -0.38
SHU1YHL006C MSL5Q12186 476 aaKnown RBP RIP-Chip data12.7□□□□□ -0.38not detected
SHU1YHL006C AHA1Q12449 350 aaKnown RBP12.7□□□□□ -0.38
SHU1YHL006C MHT1Q12525 324 aa12.7□□□□□ -0.38
SHU1YHL006C MLS1P30952 554 aa12.69□□□□□ -0.38
SHU1YHL006C RIM2P38127 377 aa12.69□□□□□ -0.38
SHU1YHL006C YHR112CP38716 378 aa12.69□□□□□ -0.38
SHU1YHL006C PTI1P39927 425 aaPredicted RBP12.69□□□□□ -0.38
SHU1YHL006C MMT2Q08970 484 aa12.69□□□□□ -0.38
Retrieved 100 of 5,963 RNA–protein pairs in 31.5 ms