RNA–Protein interactions for RNA: YMR200W

ROT1, Transcript of Molecular chaperone involved in protein folding in ER, yeast

Gene ROT1, Length 771 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ROT1	YMR200W	YBL055C	P34220	418 aa	Predicted RBP	4.87	□□□□□ -1.63
ROT1	YMR200W	TCD2	P36101	447 aa	Known RBP	4.87	□□□□□ -1.63
ROT1	YMR200W	YBL028C	P38202	106 aa		4.87	□□□□□ -1.63
ROT1	YMR200W	SEC31	P38968	1273 aa	Known RBP	4.87	□□□□□ -1.63
ROT1	YMR200W	YMR124W	P39523	943 aa	Known RBP	4.87	□□□□□ -1.63
ROT1	YMR200W	YFR018C	P43599	363 aa		4.87	□□□□□ -1.63
ROT1	YMR200W	SMC3	P47037	1230 aa		4.87	□□□□□ -1.63
ROT1	YMR200W	COS12	P53053	380 aa		4.87	□□□□□ -1.63
ROT1	YMR200W	GIM3	P53900	129 aa		4.87	□□□□□ -1.63
ROT1	YMR200W	RPN9	Q04062	393 aa	Known RBP	4.87	□□□□□ -1.63
ROT1	YMR200W	HOF1	Q05080	669 aa		4.87	□□□□□ -1.63
ROT1	YMR200W	ADF1	Q2V2Q1	113 aa		4.87	□□□□□ -1.63
ROT1	YMR200W	CBP2	P03874	630 aa	Predicted RBP	4.86	□□□□□ -1.63
ROT1	YMR200W	SNT1	P25357	1226 aa		4.86	□□□□□ -1.63
ROT1	YMR200W	SPS22	P25380	463 aa		4.86	□□□□□ -1.63
ROT1	YMR200W	CDC15	P27636	974 aa		4.86	□□□□□ -1.63
ROT1	YMR200W	DOA4	P32571	926 aa		4.86	□□□□□ -1.63
ROT1	YMR200W	SRB5	P32585	307 aa		4.86	□□□□□ -1.63
ROT1	YMR200W	RML2	P32611	393 aa		4.86	□□□□□ -1.63
ROT1	YMR200W	MRE11	P32829	692 aa		4.86	□□□□□ -1.63
ROT1	YMR200W	SEC66	P33754	206 aa		4.86	□□□□□ -1.63
ROT1	YMR200W	WBP1	P33767	430 aa	Known RBP	4.86	□□□□□ -1.63
ROT1	YMR200W	GEX2	P36173	615 aa		4.86	□□□□□ -1.63
ROT1	YMR200W	MRPL4	P36517	319 aa		4.86	□□□□□ -1.63
ROT1	YMR200W	PFF1	P38244	976 aa		4.86	□□□□□ -1.63
ROT1	YMR200W	PEX32	P38292	413 aa		4.86	□□□□□ -1.63
ROT1	YMR200W	SER3	P40054	469 aa		4.86	□□□□□ -1.63
ROT1	YMR200W	ELP2	P42935	788 aa		4.86	□□□□□ -1.63
ROT1	YMR200W	STR3	P53101	465 aa	Known RBP	4.86	□□□□□ -1.63
ROT1	YMR200W	BOP3	P53958	396 aa		4.86	□□□□□ -1.63
ROT1	YMR200W	VPS20	Q04272	221 aa		4.86	□□□□□ -1.63
ROT1	YMR200W	CRF1	Q04930	467 aa		4.86	□□□□□ -1.63
ROT1	YMR200W	YPL272C	Q08984	517 aa		4.86	□□□□□ -1.63
ROT1	YMR200W	UNG1	P12887	359 aa		4.85	□□□□□ -1.63
ROT1	YMR200W	PDA1	P16387	420 aa	Known RBP	4.85	□□□□□ -1.63
ROT1	YMR200W	CDC42	P19073	191 aa		4.85	□□□□□ -1.63
ROT1	YMR200W	VPS33	P20795	691 aa		4.85	□□□□□ -1.63
ROT1	YMR200W	VPS3	P23643	1011 aa		4.85	□□□□□ -1.63
ROT1	YMR200W	COT1	P32798	439 aa		4.85	□□□□□ -1.63
ROT1	YMR200W	MMS4	P38257	691 aa		4.85	□□□□□ -1.63
ROT1	YMR200W	KSP1	P38691	1029 aa	Known RBP	4.85	□□□□□ -1.63
ROT1	YMR200W	LIN1	P38852	340 aa	Predicted RBP	4.85	□□□□□ -1.63
ROT1	YMR200W	MNN9	P39107	395 aa	Known RBP	4.85	□□□□□ -1.63
ROT1	YMR200W	YJL193W	P39542	402 aa		4.85	□□□□□ -1.63
ROT1	YMR200W	YEL020C	P39994	560 aa		4.85	□□□□□ -1.63
ROT1	YMR200W	IRC8	P47046	822 aa		4.85	□□□□□ -1.63
ROT1	YMR200W	IMD4	P50094	524 aa	Known RBP	4.85	□□□□□ -1.63
ROT1	YMR200W	RMD9	P53140	646 aa	Known RBP	4.85	□□□□□ -1.63
ROT1	YMR200W	YGR054W	P53235	642 aa	Known RBP	4.85	□□□□□ -1.63
ROT1	YMR200W	RSM28	Q03430	361 aa		4.85	□□□□□ -1.63
ROT1	YMR200W	RPC11	Q04307	110 aa	Predicted RBP	4.85	□□□□□ -1.63
ROT1	YMR200W	FMP40	Q08968	688 aa	Predicted RBP	4.85	□□□□□ -1.63
ROT1	YMR200W	RLM1	Q12224	676 aa		4.85	□□□□□ -1.63
ROT1	YMR200W	STE2	D6VTK4	431 aa		4.84	□□□□□ -1.63
ROT1	YMR200W	SUP35	P05453	685 aa	Known RBP	4.84	□□□□□ -1.63
ROT1	YMR200W	MDM10	P18409	493 aa		4.84	□□□□□ -1.63
ROT1	YMR200W	UBA1	P22515	1024 aa	Known RBP	4.84	□□□□□ -1.63
ROT1	YMR200W	SPO11	P23179	398 aa		4.84	□□□□□ -1.63
ROT1	YMR200W	PPH22	P23595	377 aa		4.84	□□□□□ -1.63
ROT1	YMR200W	VMA16	P23968	213 aa		4.84	□□□□□ -1.63
ROT1	YMR200W	LRE1	P25579	583 aa	Known RBP	4.84	□□□□□ -1.63
ROT1	YMR200W	ILV6	P25605	309 aa	Known RBP	4.84	□□□□□ -1.63
ROT1	YMR200W	FAA1	P30624	700 aa	Known RBP	4.84	□□□□□ -1.63
ROT1	YMR200W	DSS4	P32601	143 aa		4.84	□□□□□ -1.63
ROT1	YMR200W	BCS1	P32839	456 aa		4.84	□□□□□ -1.63
ROT1	YMR200W	RRP1	P35178	278 aa	Predicted RBP	4.84	□□□□□ -1.63
ROT1	YMR200W	RPC37	P36121	282 aa		4.84	□□□□□ -1.63
ROT1	YMR200W	MRPL37	P36532	105 aa		4.84	□□□□□ -1.63
ROT1	YMR200W	PIM1	P36775	1133 aa		4.84	□□□□□ -1.63
ROT1	YMR200W	NTC20	P38302	140 aa	Predicted RBP	4.84	□□□□□ -1.63
ROT1	YMR200W	SSO2	P39926	295 aa		4.84	□□□□□ -1.63
ROT1	YMR200W	ALG5	P40350	334 aa		4.84	□□□□□ -1.63
ROT1	YMR200W	ULP2	P40537	1034 aa	Predicted RBP	4.84	□□□□□ -1.63
ROT1	YMR200W	YJL107C	P42947	387 aa		4.84	□□□□□ -1.63
ROT1	YMR200W	YJL132W	P47014	750 aa		4.84	□□□□□ -1.63
ROT1	YMR200W	YGR149W	P48236	432 aa		4.84	□□□□□ -1.63
ROT1	YMR200W	YGL242C	P53066	181 aa		4.84	□□□□□ -1.63
ROT1	YMR200W	MPP6	P53725	186 aa	Predicted RBP	4.84	□□□□□ -1.63
ROT1	YMR200W	PRM1	P53835	661 aa		4.84	□□□□□ -1.63
ROT1	YMR200W	APM1	Q00776	475 aa	Predicted RBP	4.84	□□□□□ -1.63
ROT1	YMR200W	GSH2	Q08220	491 aa		4.84	□□□□□ -1.63
ROT1	YMR200W	DIA2	Q08496	732 aa	Predicted RBP	4.84	□□□□□ -1.63
ROT1	YMR200W	FRE3	Q08905	711 aa		4.84	□□□□□ -1.63
ROT1	YMR200W	RBD2	Q12270	262 aa		4.84	□□□□□ -1.63
ROT1	YMR200W	VPS63	O13549	108 aa		4.83	□□□□□ -1.64
ROT1	YMR200W	STE3	P06783	470 aa		4.83	□□□□□ -1.64
ROT1	YMR200W	CBP1	P07252	654 aa		4.83	□□□□□ -1.64
ROT1	YMR200W	CAR2	P07991	424 aa	Known RBP	4.83	□□□□□ -1.64
ROT1	YMR200W	YML003W	P0CF16	290 aa		4.83	□□□□□ -1.64
ROT1	YMR200W	PRD1	P25375	712 aa		4.83	□□□□□ -1.64
ROT1	YMR200W	IDH2	P28241	369 aa	Known RBP	4.83	□□□□□ -1.64
ROT1	YMR200W	PDB1	P32473	366 aa	Known RBP	4.83	□□□□□ -1.64
ROT1	YMR200W	RPT5	P33297	434 aa	Known RBP	4.83	□□□□□ -1.64
ROT1	YMR200W	TUL1	P36096	758 aa		4.83	□□□□□ -1.64
ROT1	YMR200W	MLH1	P38920	769 aa		4.83	□□□□□ -1.64
ROT1	YMR200W	YJL070C	P40361	888 aa		4.83	□□□□□ -1.64
ROT1	YMR200W	INA22	P40576	216 aa		4.83	□□□□□ -1.64
ROT1	YMR200W	EFM3	P47163	339 aa		4.83	□□□□□ -1.64
ROT1	YMR200W	RPS7B	P48164	190 aa	Known RBP	4.83	□□□□□ -1.64
ROT1	YMR200W	FMS1	P50264	508 aa		4.83	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 13.9 ms