RNA–Protein interactions for RNA: YKL139W

CTK1, Transcript of Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I), yeast

Gene CTK1, Length 1,587 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CTK1	YKL139W	ADE13	Q05911	482 aa	Known RBP	4.07	□□□□□ -1.76
CTK1	YKL139W	TPO3	Q06451	622 aa		4.07	□□□□□ -1.76
CTK1	YKL139W	CDC45	Q08032	650 aa		4.07	□□□□□ -1.76
CTK1	YKL139W	RPL31B	P0C2H9	113 aa	Known RBP	4.06	□□□□□ -1.76
CTK1	YKL139W	ADY2	P25613	283 aa		4.06	□□□□□ -1.76
CTK1	YKL139W	ANP1	P32629	500 aa		4.06	□□□□□ -1.76
CTK1	YKL139W	MTR2	P34232	184 aa	Known RBP	4.06	□□□□□ -1.76
CTK1	YKL139W	MIA40	P36046	403 aa		4.06	□□□□□ -1.76
CTK1	YKL139W	THI2	P38141	450 aa		4.06	□□□□□ -1.76
CTK1	YKL139W	ARN1	P38731	627 aa		4.06	□□□□□ -1.76
CTK1	YKL139W	AIM22	P47051	409 aa		4.06	□□□□□ -1.76
CTK1	YKL139W	LYS20	P48570	428 aa	Known RBP	4.06	□□□□□ -1.76
CTK1	YKL139W	PEX25	Q02969	394 aa		4.06	□□□□□ -1.76
CTK1	YKL139W	DON1	Q05610	365 aa		4.06	□□□□□ -1.76
CTK1	YKL139W	PIG1	Q06216	648 aa		4.06	□□□□□ -1.76
CTK1	YKL139W	SLK19	Q08581	821 aa	Known RBP	4.06	□□□□□ -1.76
CTK1	YKL139W	FRE3	Q08905	711 aa		4.06	□□□□□ -1.76
CTK1	YKL139W	PUT2	P07275	575 aa		4.06	□□□□□ -1.76
CTK1	YKL139W	GAC1	P28006	793 aa		4.06	□□□□□ -1.76
CTK1	YKL139W	RRT2	P38332	387 aa		4.06	□□□□□ -1.76
CTK1	YKL139W	EFM4	P40516	257 aa		4.06	□□□□□ -1.76
CTK1	YKL139W	YJL107C	P42947	387 aa		4.06	□□□□□ -1.76
CTK1	YKL139W	NET1	P47035	1189 aa		4.06	□□□□□ -1.76
CTK1	YKL139W	YGR126W	P53274	230 aa		4.06	□□□□□ -1.76
CTK1	YKL139W	TOF2	Q02208	771 aa		4.06	□□□□□ -1.76
CTK1	YKL139W	YMR160W	Q03823	816 aa		4.06	□□□□□ -1.76
CTK1	YKL139W	YDR286C	Q05530	114 aa		4.06	□□□□□ -1.76
CTK1	YKL139W	ATG26	Q06321	1198 aa		4.06	□□□□□ -1.76
CTK1	YKL139W	YDL057W	Q07379	328 aa		4.06	□□□□□ -1.76
CTK1	YKL139W	SIL1	Q08199	421 aa		4.06	□□□□□ -1.76
CTK1	YKL139W	PFA4	Q12006	378 aa		4.06	□□□□□ -1.76
CTK1	YKL139W	SPE3	Q12074	293 aa	Known RBP	4.06	□□□□□ -1.76
CTK1	YKL139W	CTF3	Q12748	733 aa		4.06	□□□□□ -1.76
CTK1	YKL139W	TPM1	P17536	199 aa	Known RBP	4.05	□□□□□ -1.76
CTK1	YKL139W	IDH2	P28241	369 aa	Known RBP	4.05	□□□□□ -1.76
CTK1	YKL139W	MGM1	P32266	881 aa		4.05	□□□□□ -1.76
CTK1	YKL139W	TOA1	P32773	286 aa		4.05	□□□□□ -1.76
CTK1	YKL139W	HOT13	P36078	116 aa		4.05	□□□□□ -1.76
CTK1	YKL139W	ATP22	P50273	684 aa	Predicted RBP	4.05	□□□□□ -1.76
CTK1	YKL139W	CUL3	P53202	744 aa		4.05	□□□□□ -1.76
CTK1	YKL139W	SNF3	P10870	884 aa		4.04	□□□□□ -1.76
CTK1	YKL139W	PRP2	P20095	876 aa	Predicted RBP	4.04	□□□□□ -1.76
CTK1	YKL139W	SPB1	P25582	841 aa	Predicted RBP	4.04	□□□□□ -1.76
CTK1	YKL139W	YIM1	P28625	365 aa		4.04	□□□□□ -1.76
CTK1	YKL139W	BTN2	P53286	410 aa		4.04	□□□□□ -1.76
CTK1	YKL139W	EAF7	P53911	425 aa	Known RBP	4.04	□□□□□ -1.76
CTK1	YKL139W	SMF3	Q12078	473 aa	Predicted RBP	4.04	□□□□□ -1.76
CTK1	YKL139W	NCE102	Q12207	173 aa	RIP-Chip data	4.04	□□□□□ -1.76	not detected
CTK1	YKL139W	COR1	P07256	457 aa		4.03	□□□□□ -1.76
CTK1	YKL139W	PEP4	P07267	405 aa	Known RBP	4.03	□□□□□ -1.76
CTK1	YKL139W	SUI2	P20459	304 aa	Known RBP	4.03	□□□□□ -1.76
CTK1	YKL139W	PUP2	P32379	260 aa		4.03	□□□□□ -1.76
CTK1	YKL139W	SLM4	P38247	162 aa		4.03	□□□□□ -1.76
CTK1	YKL139W	UBA4	P38820	440 aa		4.03	□□□□□ -1.76
CTK1	YKL139W	VPS41	P38959	992 aa		4.03	□□□□□ -1.76
CTK1	YKL139W	MBB1	P39534	108 aa		4.03	□□□□□ -1.76
CTK1	YKL139W	YIL060W	P40519	144 aa		4.03	□□□□□ -1.76
CTK1	YKL139W	QRI1	P43123	477 aa	Known RBP	4.03	□□□□□ -1.76
CTK1	YKL139W	IRC7	P43623	340 aa		4.03	□□□□□ -1.76
CTK1	YKL139W	ATG27	P46989	271 aa		4.03	□□□□□ -1.76
CTK1	YKL139W	BPL1	P48445	690 aa	Predicted RBP	4.03	□□□□□ -1.76
CTK1	YKL139W	PYK2	P52489	506 aa	Known RBP	4.03	□□□□□ -1.76
CTK1	YKL139W	YGL138C	P53122	345 aa		4.03	□□□□□ -1.76
CTK1	YKL139W	YGR111W	P53265	400 aa		4.03	□□□□□ -1.76
CTK1	YKL139W	ATP23	P53722	227 aa		4.03	□□□□□ -1.76
CTK1	YKL139W	DUG3	P53871	357 aa		4.03	□□□□□ -1.76
CTK1	YKL139W	YNL144C	P53907	740 aa		4.03	□□□□□ -1.76
CTK1	YKL139W	MEH1	Q02205	184 aa		4.03	□□□□□ -1.76
CTK1	YKL139W	RSF1	Q05043	376 aa		4.03	□□□□□ -1.76
CTK1	YKL139W	HEL2	Q05580	639 aa	Known RBP	4.03	□□□□□ -1.76
CTK1	YKL139W	PGC1	Q08959	321 aa		4.03	□□□□□ -1.76
CTK1	YKL139W	RPN5	Q12250	445 aa	Known RBP	4.03	□□□□□ -1.76
CTK1	YKL139W	RAD14	P28519	371 aa		4.02	□□□□□ -1.77
CTK1	YKL139W	AFG1	P32317	509 aa		4.02	□□□□□ -1.77
CTK1	YKL139W	NTC20	P38302	140 aa	Predicted RBP	4.02	□□□□□ -1.77
CTK1	YKL139W	YHR054C	P38780	354 aa		4.02	□□□□□ -1.77
CTK1	YKL139W	ULP2	P40537	1034 aa	Predicted RBP	4.02	□□□□□ -1.77
CTK1	YKL139W	ALK1	P43633	760 aa	Known RBP	4.02	□□□□□ -1.77
CTK1	YKL139W	SNG1	P46950	547 aa		4.02	□□□□□ -1.77
CTK1	YKL139W	YGR149W	P48236	432 aa		4.02	□□□□□ -1.77
CTK1	YKL139W	UBP8	P50102	471 aa		4.02	□□□□□ -1.77
CTK1	YKL139W	YGL108C	P53139	140 aa		4.02	□□□□□ -1.77
CTK1	YKL139W	SWF1	Q04629	336 aa		4.02	□□□□□ -1.77
CTK1	YKL139W	RRP45	Q05636	305 aa	Known RBP	4.02	□□□□□ -1.77
CTK1	YKL139W	MMR1	Q06324	491 aa		4.02	□□□□□ -1.77
CTK1	YKL139W	THP1	Q08231	455 aa		4.02	□□□□□ -1.77
CTK1	YKL139W	VPS54	Q12071	889 aa		4.02	□□□□□ -1.77
CTK1	YKL139W	FRE6	Q12473	712 aa		4.02	□□□□□ -1.77
CTK1	YKL139W	CBP1	P07252	654 aa		4.02	□□□□□ -1.77
CTK1	YKL139W	PPZ2	P33329	710 aa		4.02	□□□□□ -1.77
CTK1	YKL139W	SHP1	P34223	423 aa		4.02	□□□□□ -1.77
CTK1	YKL139W	STV1	P37296	890 aa		4.02	□□□□□ -1.77
CTK1	YKL139W	ROT2	P38138	954 aa		4.02	□□□□□ -1.77
CTK1	YKL139W	RIX1	P38883	763 aa	Predicted RBP	4.02	□□□□□ -1.77
CTK1	YKL139W	HXT9	P40885	567 aa		4.02	□□□□□ -1.77
CTK1	YKL139W	SKO1	Q02100	647 aa		4.02	□□□□□ -1.77
CTK1	YKL139W	YVH1	Q02256	364 aa	Known RBP	4.02	□□□□□ -1.77
CTK1	YKL139W	DCI1	Q08558	271 aa		4.02	□□□□□ -1.77
CTK1	YKL139W	NFI1	Q12216	726 aa		4.02	□□□□□ -1.77
CTK1	YKL139W	RAV1	P47104	1357 aa		4.01	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 10.3 ms