RNA–Protein interactions for RNA: YDR393W

SHE9, Transcript of Protein required for normal mitochondrial morphology, yeast

Gene SHE9, Length 1,371 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHE9	YDR393W	YDL012C	Q12489	107 aa		3.1	□□□□□ -1.91
SHE9	YDR393W	PHO81	P17442	1178 aa		3.09	□□□□□ -1.92
SHE9	YDR393W	FRE1	P32791	686 aa		3.09	□□□□□ -1.92
SHE9	YDR393W	PAD1	P33751	242 aa	Known RBP RIP-Chip data	3.09	□□□□□ -1.92	not detected
SHE9	YDR393W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	3.09	□□□□□ -1.92	RIP-Chip
SHE9	YDR393W	RPS7B	P48164	190 aa	Known RBP	3.09	□□□□□ -1.92
SHE9	YDR393W	SDH5	Q08230	162 aa		3.09	□□□□□ -1.92
SHE9	YDR393W	CLN3	P13365	580 aa		3.08	□□□□□ -1.92
SHE9	YDR393W	FMP10	P40098	244 aa		3.08	□□□□□ -1.92
SHE9	YDR393W	RRT6	P53117	311 aa	Predicted RBP	3.08	□□□□□ -1.92
SHE9	YDR393W	MRPL51	Q06090	140 aa	Predicted RBP	3.08	□□□□□ -1.92
SHE9	YDR393W	TEN1	Q07921	160 aa		3.08	□□□□□ -1.92
SHE9	YDR393W	NUS1	Q12063	375 aa		3.08	□□□□□ -1.92
SHE9	YDR393W	LPD1	P09624	499 aa	Known RBP	3.07	□□□□□ -1.92
SHE9	YDR393W	CPR1	P14832	162 aa	Known RBP	3.07	□□□□□ -1.92
SHE9	YDR393W	MSM1	P22438	575 aa		3.07	□□□□□ -1.92
SHE9	YDR393W	ALT2	P52892	507 aa		3.07	□□□□□ -1.92
SHE9	YDR393W	BUD32	P53323	261 aa		3.07	□□□□□ -1.92
SHE9	YDR393W	LEU9	Q12166	604 aa	Known RBP	3.07	□□□□□ -1.92
SHE9	YDR393W	GRX7	P38068	203 aa		3.06	□□□□□ -1.92
SHE9	YDR393W	YNG2	P38806	282 aa	Known RBP	3.06	□□□□□ -1.92
SHE9	YDR393W	YIL067C	P40514	678 aa		3.06	□□□□□ -1.92
SHE9	YDR393W	PIL1	P53252	339 aa	Known RBP	3.06	□□□□□ -1.92
SHE9	YDR393W	DUG3	P53871	357 aa		3.06	□□□□□ -1.92
SHE9	YDR393W	MUB1	Q03162	620 aa		3.06	□□□□□ -1.92
SHE9	YDR393W	PBA1	Q05778	276 aa		3.06	□□□□□ -1.92
SHE9	YDR393W	SKG3	Q06315	1026 aa		3.06	□□□□□ -1.92
SHE9	YDR393W	PEP5	P12868	1029 aa		3.05	□□□□□ -1.92
SHE9	YDR393W	PDB1	P32473	366 aa	Known RBP	3.05	□□□□□ -1.92
SHE9	YDR393W	ACA1	P39970	489 aa		3.05	□□□□□ -1.92
SHE9	YDR393W	SNG1	P46950	547 aa		3.05	□□□□□ -1.92
SHE9	YDR393W	DIA3	P52290	468 aa		3.05	□□□□□ -1.92
SHE9	YDR393W	SHR3	Q02774	210 aa		3.05	□□□□□ -1.92
SHE9	YDR393W	SLD5	Q03406	294 aa		3.05	□□□□□ -1.92
SHE9	YDR393W	RBD2	Q12270	262 aa		3.05	□□□□□ -1.92
SHE9	YDR393W	YLR302C	O13544	120 aa		3.04	□□□□□ -1.92
SHE9	YDR393W	HHF1	P02309	103 aa	Known RBP	3.04	□□□□□ -1.92
SHE9	YDR393W	SUP35	P05453	685 aa	Known RBP	3.04	□□□□□ -1.92
SHE9	YDR393W	RPB2	P08518	1224 aa	Known RBP	3.04	□□□□□ -1.92
SHE9	YDR393W	PWP1	P21304	576 aa	Known RBP	3.04	□□□□□ -1.92
SHE9	YDR393W	BUD5	P25300	642 aa	Predicted RBP	3.04	□□□□□ -1.92
SHE9	YDR393W	YKL100C	P34248	587 aa		3.04	□□□□□ -1.92
SHE9	YDR393W	SLZ1	P40167	298 aa		3.04	□□□□□ -1.92
SHE9	YDR393W	ARK1	P53974	638 aa		3.04	□□□□□ -1.92
SHE9	YDR393W	MRPL35	Q06678	367 aa		3.04	□□□□□ -1.92
SHE9	YDR393W	ETT1	Q08421	412 aa	Known RBP	3.04	□□□□□ -1.92
SHE9	YDR393W	SGF29	P25554	259 aa		3.03	□□□□□ -1.92
SHE9	YDR393W	ATP4	P05626	244 aa		3.02	□□□□□ -1.93
SHE9	YDR393W	YCR007C	P25354	239 aa		3.02	□□□□□ -1.93
SHE9	YDR393W	ARO2	P28777	376 aa	Known RBP	3.02	□□□□□ -1.93
SHE9	YDR393W	SYN8	P31377	255 aa		3.02	□□□□□ -1.93
SHE9	YDR393W	MRP4	P32902	394 aa		3.02	□□□□□ -1.93
SHE9	YDR393W	TEF4	P36008	412 aa	Known RBP	3.02	□□□□□ -1.93
SHE9	YDR393W	YKL023W	P36103	277 aa	Known RBP	3.02	□□□□□ -1.93
SHE9	YDR393W	RIC1	P40395	1056 aa		3.02	□□□□□ -1.93
SHE9	YDR393W	RRN11	Q04712	507 aa		3.02	□□□□□ -1.93
SHE9	YDR393W	VPS74	Q06385	345 aa		3.02	□□□□□ -1.93
SHE9	YDR393W	PSR1	Q07800	427 aa		3.02	□□□□□ -1.93
SHE9	YDR393W	ADH2	P00331	348 aa	Known RBP	3.01	□□□□□ -1.93
SHE9	YDR393W	APA1	P16550	321 aa	Known RBP	3.01	□□□□□ -1.93
SHE9	YDR393W	ALY1	P36117	915 aa		3.01	□□□□□ -1.93
SHE9	YDR393W	YJR154W	P47181	346 aa		3.01	□□□□□ -1.93
SHE9	YDR393W	DRN1	P53255	507 aa	Known RBP	3.01	□□□□□ -1.93
SHE9	YDR393W	PAP2	P53632	584 aa	Known RBP	3.01	□□□□□ -1.93
SHE9	YDR393W	IRC15	Q02733	499 aa		3.01	□□□□□ -1.93
SHE9	YDR393W	RCO1	Q04779	684 aa		3.01	□□□□□ -1.93
SHE9	YDR393W	HEM15	P16622	393 aa		3	□□□□□ -1.93
SHE9	YDR393W	ADH7	P25377	361 aa		3	□□□□□ -1.93
SHE9	YDR393W	MRP20	P32387	263 aa		3	□□□□□ -1.93
SHE9	YDR393W	REE1	P40893	198 aa		3	□□□□□ -1.93
SHE9	YDR393W	BLS1	Q06071	122 aa		3	□□□□□ -1.93
SHE9	YDR393W	HIP1	P06775	603 aa		3	□□□□□ -1.93
SHE9	YDR393W	GWT1	P47026	490 aa		3	□□□□□ -1.93
SHE9	YDR393W	MSC1	Q03104	513 aa		3	□□□□□ -1.93
SHE9	YDR393W	DPB4	Q04603	196 aa	Known RBP	3	□□□□□ -1.93
SHE9	YDR393W	IVY1	Q04934	453 aa		3	□□□□□ -1.93
SHE9	YDR393W	NCE102	Q12207	173 aa	RIP-Chip data	3	□□□□□ -1.93	not detected
SHE9	YDR393W	CHS1	P08004	1131 aa		2.99	□□□□□ -1.93
SHE9	YDR393W	PFK2	P16862	959 aa	Known RBP RIP-Chip data	2.99	□□□□□ -1.93	not detected
SHE9	YDR393W	CNS1	P33313	385 aa		2.99	□□□□□ -1.93
SHE9	YDR393W	KTR3	P38130	404 aa	Predicted RBP	2.99	□□□□□ -1.93
SHE9	YDR393W	DSD1	P53095	428 aa		2.99	□□□□□ -1.93
SHE9	YDR393W	LSP1	Q12230	341 aa	Known RBP	2.99	□□□□□ -1.93
SHE9	YDR393W	YEF3	P16521	1044 aa	Known RBP	2.98	□□□□□ -1.93
SHE9	YDR393W	VMA16	P23968	213 aa		2.98	□□□□□ -1.93
SHE9	YDR393W	XRS2	P33301	854 aa		2.98	□□□□□ -1.93
SHE9	YDR393W	YBL055C	P34220	418 aa	Predicted RBP	2.98	□□□□□ -1.93
SHE9	YDR393W	NUP133	P36161	1157 aa		2.98	□□□□□ -1.93
SHE9	YDR393W	BNA1	P47096	177 aa		2.98	□□□□□ -1.93
SHE9	YDR393W	ESA1	Q08649	445 aa		2.98	□□□□□ -1.93
SHE9	YDR393W	YOR365C	Q08844	703 aa		2.98	□□□□□ -1.93
SHE9	YDR393W	TRM8	Q12009	286 aa		2.98	□□□□□ -1.93
SHE9	YDR393W	FAB1	P34756	2278 aa		2.97	□□□□□ -1.93
SHE9	YDR393W	SUC2	P00724	532 aa		2.97	□□□□□ -1.93
SHE9	YDR393W	CDC60	P26637	1090 aa	Known RBP	2.97	□□□□□ -1.93
SHE9	YDR393W	RAD52	P06778	471 aa	Known RBP	2.96	□□□□□ -1.94
SHE9	YDR393W	KGD1	P20967	1014 aa	Known RBP	2.96	□□□□□ -1.94
SHE9	YDR393W	RVS161	P25343	265 aa	Known RBP	2.96	□□□□□ -1.94
SHE9	YDR393W	PUP3	P25451	205 aa	Known RBP	2.96	□□□□□ -1.94
SHE9	YDR393W	YHR210C	P38893	341 aa		2.96	□□□□□ -1.94

Retrieved 100 of 5,963 RNA–protein pairs in 20.9 ms