RNA–Protein interactions for RNA: ENST00000592017.5

CLIP3-205, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 5

Gene CLIP3, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-205ENST00000592017 CPVLQ9H3G5 476 aa16.28■□□□□ 0.2
CLIP3-205ENST00000592017 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.28■□□□□ 0.2
CLIP3-205ENST00000592017 CCPG1Q9ULG6 757 aa16.28■□□□□ 0.2
CLIP3-205ENST00000592017 LAMA3Q16787 3333 aa16.28■□□□□ 0.2
CLIP3-205ENST00000592017 SZT2Q5T011 3432 aa16.28■□□□□ 0.2
CLIP3-205ENST00000592017 KBTBD13C9JR72 458 aa16.27■□□□□ 0.2
CLIP3-205ENST00000592017 POTEB2H3BUK9 544 aa16.27■□□□□ 0.2
CLIP3-205ENST00000592017 AKR1A1P14550 325 aa16.27■□□□□ 0.2
CLIP3-205ENST00000592017 BMP8BP34820 402 aa16.27■□□□□ 0.2
CLIP3-205ENST00000592017 ACVR2BQ13705 512 aa16.27■□□□□ 0.2
CLIP3-205ENST00000592017 WTAPQ15007 396 aa16.27■□□□□ 0.2
CLIP3-205ENST00000592017 NECTIN1Q15223 517 aa16.27■□□□□ 0.2
CLIP3-205ENST00000592017 TMEM67Q5HYA8 995 aa16.27■□□□□ 0.2
CLIP3-205ENST00000592017 RNF20Q5VTR2 975 aa16.27■□□□□ 0.2
CLIP3-205ENST00000592017 SLC39A5Q6ZMH5 540 aa16.27■□□□□ 0.2
CLIP3-205ENST00000592017 FERMT2Q96AC1 680 aa16.27■□□□□ 0.2
CLIP3-205ENST00000592017 UBA5Q9GZZ9 404 aa16.27■□□□□ 0.2
CLIP3-205ENST00000592017 ZHX1Q9UKY1 873 aaPredicted RBP16.27■□□□□ 0.2
CLIP3-205ENST00000592017 ALPK3Q96L96 1907 aa16.26■□□□□ 0.19
CLIP3-205ENST00000592017 PRC1O43663 620 aa16.26■□□□□ 0.19
CLIP3-205ENST00000592017 DHX16O60231 1041 aaKnown RBP16.26■□□□□ 0.19
CLIP3-205ENST00000592017 ADAMTS4O75173 837 aa16.26■□□□□ 0.19
CLIP3-205ENST00000592017 ICAM1P05362 532 aa16.26■□□□□ 0.19
CLIP3-205ENST00000592017 PARP1P09874 1014 aaKnown RBP16.26■□□□□ 0.19
CLIP3-205ENST00000592017 ANTXR2P58335 489 aa16.26■□□□□ 0.19
CLIP3-205ENST00000592017 RTP1P59025 263 aa16.26■□□□□ 0.19
CLIP3-205ENST00000592017 ASPRV1Q53RT3 343 aa16.26■□□□□ 0.19
CLIP3-205ENST00000592017 ARMCX2Q7L311 632 aa16.26■□□□□ 0.19
CLIP3-205ENST00000592017 CCDC144CPQ8IYA2 1237 aa16.26■□□□□ 0.19
CLIP3-205ENST00000592017 KATNBL1Q9H079 304 aa16.26■□□□□ 0.19
CLIP3-205ENST00000592017 SENP2Q9HC62 589 aa16.26■□□□□ 0.19
CLIP3-205ENST00000592017 FAM184BQ9ULE4 1060 aa16.26■□□□□ 0.19
CLIP3-205ENST00000592017 PHF24Q9UPV7 400 aa16.26■□□□□ 0.19
CLIP3-205ENST00000592017 DDX49Q9Y6V7 483 aaKnown RBP16.26■□□□□ 0.19
CLIP3-205ENST00000592017 ASTN1O14525 1302 aa16.25■□□□□ 0.19
CLIP3-205ENST00000592017 A0A1W2PPC1 479 aa16.25■□□□□ 0.19
CLIP3-205ENST00000592017 ADCY6O43306 1168 aa16.25■□□□□ 0.19
CLIP3-205ENST00000592017 IRX5P78411 483 aaPredicted RBP16.25■□□□□ 0.19
CLIP3-205ENST00000592017 SNX17Q15036 470 aa16.25■□□□□ 0.19
CLIP3-205ENST00000592017 PURBQ96QR8 312 aaKnown RBP16.25■□□□□ 0.19
CLIP3-205ENST00000592017 ABHD16BQ9H3Z7 469 aa16.25■□□□□ 0.19
CLIP3-205ENST00000592017 CYP39A1Q9NYL5 469 aa16.25■□□□□ 0.19
CLIP3-205ENST00000592017 MCM5P33992 734 aa16.24■□□□□ 0.19
CLIP3-205ENST00000592017 CCDC144BQ3MJ40 725 aa16.24■□□□□ 0.19
CLIP3-205ENST00000592017 TRIM60Q495X7 471 aa16.24■□□□□ 0.19
CLIP3-205ENST00000592017 RNF180Q86T96 592 aa16.24■□□□□ 0.19
CLIP3-205ENST00000592017 KLHDC9Q8NEP7 349 aa16.24■□□□□ 0.19
CLIP3-205ENST00000592017 GPHNQ9NQX3 736 aaPredicted RBP16.24■□□□□ 0.19
CLIP3-205ENST00000592017 ATP11BQ9Y2G3 1177 aa16.24■□□□□ 0.19
CLIP3-205ENST00000592017 SYNRGQ9UMZ2 1314 aa16.23■□□□□ 0.19
CLIP3-205ENST00000592017 MYADML2A6NDP7 307 aa16.23■□□□□ 0.19
CLIP3-205ENST00000592017 SOX1O00570 391 aaPredicted RBP16.23■□□□□ 0.19
CLIP3-205ENST00000592017 DUSP11O75319 330 aaKnown RBP16.23■□□□□ 0.19
CLIP3-205ENST00000592017 MDM2Q00987 491 aaPredicted RBP16.23■□□□□ 0.19
CLIP3-205ENST00000592017 BAATQ14032 418 aaPredicted RBP16.23■□□□□ 0.19
CLIP3-205ENST00000592017 COL9A3Q14050 684 aaPredicted RBP16.23■□□□□ 0.19
CLIP3-205ENST00000592017 CDC37Q16543 378 aaPredicted RBP16.23■□□□□ 0.19
CLIP3-205ENST00000592017 USH1GQ495M9 461 aa16.23■□□□□ 0.19
CLIP3-205ENST00000592017 CCSAPQ6IQ19 270 aaPredicted RBP16.23■□□□□ 0.19
CLIP3-205ENST00000592017 NSMFQ6X4W1 530 aa16.23■□□□□ 0.19
CLIP3-205ENST00000592017 NFXL1Q6ZNB6 911 aa16.23■□□□□ 0.19
CLIP3-205ENST00000592017 CATIPQ7Z7H3 387 aa16.23■□□□□ 0.19
CLIP3-205ENST00000592017 ADGRF4Q8IZF3 695 aa16.23■□□□□ 0.19
CLIP3-205ENST00000592017 STAG2Q8N3U4 1231 aa16.23■□□□□ 0.19
CLIP3-205ENST00000592017 NUP133Q8WUM0 1156 aa16.23■□□□□ 0.19
CLIP3-205ENST00000592017 CLEC4DQ8WXI8 215 aa16.23■□□□□ 0.19
CLIP3-205ENST00000592017 LRRC2Q9BYS8 371 aa16.23■□□□□ 0.19
CLIP3-205ENST00000592017 VAT1LQ9HCJ6 419 aa16.23■□□□□ 0.19
CLIP3-205ENST00000592017 ZNFX1Q9P2E3 1918 aaKnown RBP16.23■□□□□ 0.19
CLIP3-205ENST00000592017 NFIBO00712 420 aa16.22■□□□□ 0.19
CLIP3-205ENST00000592017 REC8O95072 547 aa16.22■□□□□ 0.19
CLIP3-205ENST00000592017 TLE2Q04725 743 aa16.22■□□□□ 0.19
CLIP3-205ENST00000592017 C1orf53Q5VUE5 145 aa16.22■□□□□ 0.19
CLIP3-205ENST00000592017 RASEFQ8IZ41 740 aa16.22■□□□□ 0.19
CLIP3-205ENST00000592017 IGDCC4Q8TDY8 1250 aa16.22■□□□□ 0.19
CLIP3-205ENST00000592017 NEK1Q96PY6 1258 aa16.22■□□□□ 0.19
CLIP3-205ENST00000592017 TSEN34Q9BSV6 310 aaKnown RBP16.22■□□□□ 0.19
CLIP3-205ENST00000592017 MYL10Q9BUA6 226 aa16.22■□□□□ 0.19
CLIP3-205ENST00000592017 UBE2OQ9C0C9 1292 aaKnown RBP16.22■□□□□ 0.19
CLIP3-205ENST00000592017 LY9Q9HBG7 655 aa16.22■□□□□ 0.19
CLIP3-205ENST00000592017 A0A1W2PQ45 241 aaPredicted RBP16.21■□□□□ 0.19
CLIP3-205ENST00000592017 A0A1W2PQY0 241 aa16.21■□□□□ 0.19
CLIP3-205ENST00000592017 CCDC69A6NI79 296 aa16.21■□□□□ 0.19
CLIP3-205ENST00000592017 ASB14A6NK59 587 aa16.21■□□□□ 0.19
CLIP3-205ENST00000592017 KLRF2D3W0D1 207 aa16.21■□□□□ 0.19
CLIP3-205ENST00000592017 SH2B2O14492 632 aaPredicted RBP16.21■□□□□ 0.19
CLIP3-205ENST00000592017 CTAGE5O15320 804 aa16.21■□□□□ 0.19
CLIP3-205ENST00000592017 ACLYP53396 1101 aa16.21■□□□□ 0.19
CLIP3-205ENST00000592017 GRM4Q14833 912 aa16.21■□□□□ 0.19
CLIP3-205ENST00000592017 KCNA10Q16322 511 aa16.21■□□□□ 0.19
CLIP3-205ENST00000592017 SH3RF1Q7Z6J0 888 aa16.21■□□□□ 0.19
CLIP3-205ENST00000592017 TMEM87BQ96K49 555 aa16.21■□□□□ 0.19
CLIP3-205ENST00000592017 UPF3AQ9H1J1 476 aaKnown RBP16.21■□□□□ 0.19
CLIP3-205ENST00000592017 MAD2L2Q9UI95 211 aa16.21■□□□□ 0.19
CLIP3-205ENST00000592017 SMCHD1A6NHR9 2005 aa16.2■□□□□ 0.18
CLIP3-205ENST00000592017 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.2■□□□□ 0.18
CLIP3-205ENST00000592017 PTPDC1A2A3K4 754 aa16.2■□□□□ 0.18
CLIP3-205ENST00000592017 PTGS1P23219 599 aa16.2■□□□□ 0.18
CLIP3-205ENST00000592017 GJA9P57773 515 aa16.2■□□□□ 0.18
CLIP3-205ENST00000592017 KRT32Q14532 448 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms