RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	YJL043W	P47053	257 aa		4.99	□□□□□ -1.61
CAF16	YFL028C	VPS73	P53142	486 aa	Known RBP	4.99	□□□□□ -1.61
CAF16	YFL028C	RSC1	P53236	928 aa		4.99	□□□□□ -1.61
CAF16	YFL028C	INA17	Q02888	182 aa		4.99	□□□□□ -1.61
CAF16	YFL028C	ERO1	Q03103	563 aa		4.99	□□□□□ -1.61
CAF16	YFL028C	IRC3	Q06683	689 aa		4.99	□□□□□ -1.61
CAF16	YFL028C	YEH1	Q07804	573 aa		4.99	□□□□□ -1.61
CAF16	YFL028C	YOR389W	Q08912	624 aa		4.99	□□□□□ -1.61
CAF16	YFL028C	LEA1	Q08963	238 aa	Predicted RBP	4.99	□□□□□ -1.61
CAF16	YFL028C	PGA3	Q12746	312 aa	Known RBP	4.99	□□□□□ -1.61
CAF16	YFL028C	SAC3	P46674	1301 aa		4.98	□□□□□ -1.61
CAF16	YFL028C	HXK2	P04807	486 aa	Known RBP	4.98	□□□□□ -1.61
CAF16	YFL028C	HOM3	P10869	527 aa		4.98	□□□□□ -1.61
CAF16	YFL028C	PWP1	P21304	576 aa	Known RBP	4.98	□□□□□ -1.61
CAF16	YFL028C	NPL6	P32832	435 aa		4.98	□□□□□ -1.61
CAF16	YFL028C	ORC2	P32833	620 aa		4.98	□□□□□ -1.61
CAF16	YFL028C	MNN2	P38069	597 aa		4.98	□□□□□ -1.61
CAF16	YFL028C	EXO1	P39875	702 aa		4.98	□□□□□ -1.61
CAF16	YFL028C	YEL057C	P39983	233 aa		4.98	□□□□□ -1.61
CAF16	YFL028C	ECM10	P39987	644 aa		4.98	□□□□□ -1.61
CAF16	YFL028C	SLI1	P53304	468 aa		4.98	□□□□□ -1.61
CAF16	YFL028C	BUD7	Q08754	746 aa		4.98	□□□□□ -1.61
CAF16	YFL028C	SFI1	Q12369	946 aa		4.98	□□□□□ -1.61
CAF16	YFL028C	YJR112W-A	Q3E743	109 aa		4.98	□□□□□ -1.61
CAF16	YFL028C	YPT6	Q99260	215 aa		4.98	□□□□□ -1.61
CAF16	YFL028C	HKR1	P41809	1802 aa		4.97	□□□□□ -1.61
CAF16	YFL028C	EST1	P17214	699 aa	Predicted RBP	4.97	□□□□□ -1.61
CAF16	YFL028C	GSH1	P32477	678 aa		4.97	□□□□□ -1.61
CAF16	YFL028C	VMA8	P32610	256 aa	Known RBP	4.97	□□□□□ -1.61
CAF16	YFL028C	PXA2	P34230	853 aa		4.97	□□□□□ -1.61
CAF16	YFL028C	YNG2	P38806	282 aa	Known RBP	4.97	□□□□□ -1.61
CAF16	YFL028C	PHM8	P40025	321 aa		4.97	□□□□□ -1.61
CAF16	YFL028C	SGN1	P40561	250 aa	Known RBP RIP-Chip data	4.97	□□□□□ -1.61	not detected
CAF16	YFL028C	YFR020W	P43600	232 aa		4.97	□□□□□ -1.61
CAF16	YFL028C	CTK2	P46962	323 aa		4.97	□□□□□ -1.61
CAF16	YFL028C	STR3	P53101	465 aa	Known RBP	4.97	□□□□□ -1.61
CAF16	YFL028C	ARO10	Q06408	635 aa		4.97	□□□□□ -1.61
CAF16	YFL028C	RAD34	Q06665	692 aa		4.97	□□□□□ -1.61
CAF16	YFL028C	DUR1,2	P32528	1835 aa	Known RBP	4.96	□□□□□ -1.62
CAF16	YFL028C	AQY1	P0CD91	305 aa		4.96	□□□□□ -1.62
CAF16	YFL028C	RPC53	P25441	422 aa		4.96	□□□□□ -1.62
CAF16	YFL028C	CCT6	P39079	546 aa		4.96	□□□□□ -1.62
CAF16	YFL028C	LSM5	P40089	93 aa	Known RBP	4.96	□□□□□ -1.62
CAF16	YFL028C	DPB11	P47027	764 aa	Predicted RBP	4.96	□□□□□ -1.62
CAF16	YFL028C	IRC8	P47046	822 aa		4.96	□□□□□ -1.62
CAF16	YFL028C	DIA3	P52290	468 aa		4.96	□□□□□ -1.62
CAF16	YFL028C	YGR066C	P53242	292 aa		4.96	□□□□□ -1.62
CAF16	YFL028C	YGR250C	P53316	781 aa	Known RBP	4.96	□□□□□ -1.62
CAF16	YFL028C	YPR003C	P53394	754 aa		4.96	□□□□□ -1.62
CAF16	YFL028C	SNU66	Q12420	587 aa	Predicted RBP	4.96	□□□□□ -1.62
CAF16	YFL028C	FIG2	P25653	1609 aa		4.95	□□□□□ -1.62
CAF16	YFL028C	FAS2	P19097	1887 aa	Known RBP	4.95	□□□□□ -1.62
CAF16	YFL028C	BI2	P03873	423 aa		4.95	□□□□□ -1.62
CAF16	YFL028C	ADE5,7	P07244	802 aa	Known RBP	4.95	□□□□□ -1.62
CAF16	YFL028C	PET111	P08468	800 aa		4.95	□□□□□ -1.62
CAF16	YFL028C	SPO11	P23179	398 aa		4.95	□□□□□ -1.62
CAF16	YFL028C	ICL1	P28240	557 aa	Predicted RBP	4.95	□□□□□ -1.62
CAF16	YFL028C	GPI10	P30777	616 aa		4.95	□□□□□ -1.62
CAF16	YFL028C	RPC34	P32910	317 aa		4.95	□□□□□ -1.62
CAF16	YFL028C	YKL050C	P35736	922 aa		4.95	□□□□□ -1.62
CAF16	YFL028C	UBP11	P36026	717 aa		4.95	□□□□□ -1.62
CAF16	YFL028C	YEL020C	P39994	560 aa		4.95	□□□□□ -1.62
CAF16	YFL028C	AXL1	P40851	1208 aa		4.95	□□□□□ -1.62
CAF16	YFL028C	IST1	P53843	298 aa	Predicted RBP	4.95	□□□□□ -1.62
CAF16	YFL028C	LUC7	Q07508	261 aa	Predicted RBP	4.95	□□□□□ -1.62
CAF16	YFL028C	YPL272C	Q08984	517 aa		4.95	□□□□□ -1.62
CAF16	YFL028C	RIM20	Q12033	661 aa		4.95	□□□□□ -1.62
CAF16	YFL028C	PNS1	Q12412	539 aa		4.95	□□□□□ -1.62
CAF16	YFL028C	GRX6	Q12438	231 aa		4.95	□□□□□ -1.62
CAF16	YFL028C	RPN13	O13563	156 aa		4.94	□□□□□ -1.62
CAF16	YFL028C	DFR1	P07807	211 aa	Known RBP RIP-Chip data	4.94	□□□□□ -1.62	not detected
CAF16	YFL028C	PDX1	P16451	410 aa		4.94	□□□□□ -1.62
CAF16	YFL028C	ADH7	P25377	361 aa		4.94	□□□□□ -1.62
CAF16	YFL028C	DBF4	P32325	704 aa		4.94	□□□□□ -1.62
CAF16	YFL028C	BLI1	P35727	113 aa		4.94	□□□□□ -1.62
CAF16	YFL028C	MUM2	P38236	366 aa		4.94	□□□□□ -1.62
CAF16	YFL028C	DIA4	P38705	446 aa	Predicted RBP	4.94	□□□□□ -1.62
CAF16	YFL028C	SPL2	P38839	148 aa		4.94	□□□□□ -1.62
CAF16	YFL028C	MET18	P40469	1032 aa		4.94	□□□□□ -1.62
CAF16	YFL028C	MET28	P40573	187 aa		4.94	□□□□□ -1.62
CAF16	YFL028C	VID30	P53076	958 aa		4.94	□□□□□ -1.62
CAF16	YFL028C	RPT4	P53549	437 aa	Known RBP	4.94	□□□□□ -1.62
CAF16	YFL028C	FMP30	Q02883	468 aa		4.94	□□□□□ -1.62
CAF16	YFL028C	VPS38	Q05919	439 aa		4.94	□□□□□ -1.62
CAF16	YFL028C	THI3	Q07471	609 aa		4.94	□□□□□ -1.62
CAF16	YFL028C	GRC3	Q07845	632 aa		4.94	□□□□□ -1.62
CAF16	YFL028C	IRC10	Q08118	586 aa		4.94	□□□□□ -1.62
CAF16	YFL028C	FMP40	Q08968	688 aa	Predicted RBP	4.94	□□□□□ -1.62
CAF16	YFL028C	ATG9	Q12142	997 aa		4.94	□□□□□ -1.62
CAF16	YFL028C	INP53	Q12271	1107 aa		4.94	□□□□□ -1.62
CAF16	YFL028C	GAL80	P04387	435 aa		4.93	□□□□□ -1.62
CAF16	YFL028C	SUP35	P05453	685 aa	Known RBP	4.93	□□□□□ -1.62
CAF16	YFL028C	KRE2	P27809	442 aa		4.93	□□□□□ -1.62
CAF16	YFL028C	MGM1	P32266	881 aa		4.93	□□□□□ -1.62
CAF16	YFL028C	SRP72	P38688	640 aa	Known RBP	4.93	□□□□□ -1.62
CAF16	YFL028C	SHC1	P39000	512 aa		4.93	□□□□□ -1.62
CAF16	YFL028C	UIP3	P39547	235 aa		4.93	□□□□□ -1.62
CAF16	YFL028C	SAE2	P46946	345 aa		4.93	□□□□□ -1.62
CAF16	YFL028C	MRK1	P50873	501 aa		4.93	□□□□□ -1.62
CAF16	YFL028C	PFA5	Q03289	374 aa		4.93	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 43.1 ms