RNA–Protein interactions for RNA: YLR363C

NMD4, Transcript of Protein that may be involved in nonsense-mediated mRNA decay, yeast

Gene NMD4, Length 657 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NMD4	YLR363C	CDC1	P40986	491 aa		5.26	□□□□□ -1.57
NMD4	YLR363C	PDR8	Q06149	701 aa		5.26	□□□□□ -1.57
NMD4	YLR363C	ATX2	Q12067	313 aa		5.26	□□□□□ -1.57
NMD4	YLR363C	FLO1	P32768	1537 aa		5.25	□□□□□ -1.57
NMD4	YLR363C	LRE1	P25579	583 aa	Known RBP	5.25	□□□□□ -1.57
NMD4	YLR363C	MRPL36	P36531	177 aa		5.25	□□□□□ -1.57
NMD4	YLR363C	UBX4	P54730	416 aa		5.25	□□□□□ -1.57
NMD4	YLR363C	ECM22	Q05958	814 aa	Predicted RBP	5.25	□□□□□ -1.57
NMD4	YLR363C	KEL3	Q08979	651 aa	Predicted RBP	5.25	□□□□□ -1.57
NMD4	YLR363C	YML003W	P0CF16	290 aa		5.24	□□□□□ -1.57
NMD4	YLR363C	YCP4	P25349	247 aa	Known RBP	5.24	□□□□□ -1.57
NMD4	YLR363C	RFA2	P26754	273 aa	Known RBP	5.24	□□□□□ -1.57
NMD4	YLR363C	NUP120	P35729	1037 aa		5.24	□□□□□ -1.57
NMD4	YLR363C	SCO2	P38072	301 aa		5.24	□□□□□ -1.57
NMD4	YLR363C	NPR3	P38742	1146 aa		5.24	□□□□□ -1.57
NMD4	YLR363C	MDV1	P47025	714 aa		5.24	□□□□□ -1.57
NMD4	YLR363C	YGL242C	P53066	181 aa		5.24	□□□□□ -1.57
NMD4	YLR363C	VAM6	Q07468	1049 aa		5.24	□□□□□ -1.57
NMD4	YLR363C	SWT1	Q12104	458 aa		5.24	□□□□□ -1.57
NMD4	YLR363C	YPT1	P01123	206 aa	Known RBP	5.23	□□□□□ -1.57
NMD4	YLR363C	SUI3	P09064	285 aa	Known RBP	5.23	□□□□□ -1.57
NMD4	YLR363C	PRE8	P23639	250 aa		5.23	□□□□□ -1.57
NMD4	YLR363C	TIF4631	P39935	952 aa	Known RBP	5.23	□□□□□ -1.57
NMD4	YLR363C	RPT2	P40327	437 aa	Known RBP	5.23	□□□□□ -1.57
NMD4	YLR363C	YIL161W	P40449	235 aa	Known RBP	5.23	□□□□□ -1.57
NMD4	YLR363C	ASG1	P40467	964 aa		5.23	□□□□□ -1.57
NMD4	YLR363C	ERR3	P42222	437 aa		5.23	□□□□□ -1.57
NMD4	YLR363C	YFL040W	P43562	540 aa		5.23	□□□□□ -1.57
NMD4	YLR363C	MLC1	P53141	149 aa		5.23	□□□□□ -1.57
NMD4	YLR363C	YNL144C	P53907	740 aa		5.23	□□□□□ -1.57
NMD4	YLR363C	MCH4	Q08268	501 aa		5.23	□□□□□ -1.57
NMD4	YLR363C	MRP2	P10663	115 aa	Predicted RBP	5.22	□□□□□ -1.57
NMD4	YLR363C	NCP1	P16603	691 aa	Known RBP	5.22	□□□□□ -1.57
NMD4	YLR363C	SPO16	P17122	198 aa		5.22	□□□□□ -1.57
NMD4	YLR363C	OSH3	P38713	996 aa	Known RBP	5.22	□□□□□ -1.57
NMD4	YLR363C	YIR016W	P40572	265 aa		5.22	□□□□□ -1.57
NMD4	YLR363C	YPT11	P48559	417 aa		5.22	□□□□□ -1.57
NMD4	YLR363C	DCP2	P53550	970 aa	Known RBP	5.22	□□□□□ -1.57
NMD4	YLR363C	STP3	Q05937	343 aa		5.22	□□□□□ -1.57
NMD4	YLR363C	ECM30	Q06673	1274 aa		5.22	□□□□□ -1.57
NMD4	YLR363C	TAO3	P40468	2376 aa		5.22	□□□□□ -1.57
NMD4	YLR363C	PDR18	P53756	1333 aa		5.22	□□□□□ -1.57
NMD4	YLR363C	PGI1	P12709	554 aa	Known RBP	5.21	□□□□□ -1.58
NMD4	YLR363C	PCT1	P13259	424 aa		5.21	□□□□□ -1.58
NMD4	YLR363C	VMA2	P16140	517 aa	Known RBP	5.21	□□□□□ -1.58
NMD4	YLR363C	YCL049C	P25577	312 aa		5.21	□□□□□ -1.58
NMD4	YLR363C	PXL1	P36166	706 aa		5.21	□□□□□ -1.58
NMD4	YLR363C	PES4	P39684	611 aa		5.21	□□□□□ -1.58
NMD4	YLR363C	UBP8	P50102	471 aa		5.21	□□□□□ -1.58
NMD4	YLR363C	PIG1	Q06216	648 aa		5.21	□□□□□ -1.58
NMD4	YLR363C	UBX3	Q12229	455 aa		5.21	□□□□□ -1.58
NMD4	YLR363C	VPS13	Q07878	3144 aa		5.2	□□□□□ -1.58
NMD4	YLR363C	ATP2	P00830	511 aa	Known RBP	5.2	□□□□□ -1.58
NMD4	YLR363C	YCR006C	P25350	157 aa		5.2	□□□□□ -1.58
NMD4	YLR363C	EXO84	P38261	753 aa		5.2	□□□□□ -1.58
NMD4	YLR363C	RTS1	P38903	757 aa		5.2	□□□□□ -1.58
NMD4	YLR363C	LYS20	P48570	428 aa	Known RBP	5.2	□□□□□ -1.58
NMD4	YLR363C	SOL4	P53315	255 aa		5.2	□□□□□ -1.58
NMD4	YLR363C	EAF7	P53911	425 aa	Known RBP	5.2	□□□□□ -1.58
NMD4	YLR363C	BOP3	P53958	396 aa		5.2	□□□□□ -1.58
NMD4	YLR363C	YML037C	Q03703	340 aa		5.2	□□□□□ -1.58
NMD4	YLR363C	SKG3	Q06315	1026 aa		5.2	□□□□□ -1.58
NMD4	YLR363C	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	5.2	□□□□□ -1.58	not detected
NMD4	YLR363C	QCR6	P00127	147 aa		5.19	□□□□□ -1.58
NMD4	YLR363C	NUC1	P08466	329 aa		5.19	□□□□□ -1.58
NMD4	YLR363C	YSP3	P25036	478 aa		5.19	□□□□□ -1.58
NMD4	YLR363C	RGT1	P32862	1170 aa		5.19	□□□□□ -1.58
NMD4	YLR363C	ATO2	P32907	282 aa		5.19	□□□□□ -1.58
NMD4	YLR363C	GEX2	P36173	615 aa		5.19	□□□□□ -1.58
NMD4	YLR363C	KTR3	P38130	404 aa	Predicted RBP	5.19	□□□□□ -1.58
NMD4	YLR363C	GND1	P38720	489 aa	Known RBP	5.19	□□□□□ -1.58
NMD4	YLR363C	VPS41	P38959	992 aa		5.19	□□□□□ -1.58
NMD4	YLR363C	MRPL13	Q02204	264 aa		5.19	□□□□□ -1.58
NMD4	YLR363C	SWF1	Q04629	336 aa		5.19	□□□□□ -1.58
NMD4	YLR363C	CIA1	Q05583	330 aa		5.19	□□□□□ -1.58
NMD4	YLR363C	BLS1	Q06071	122 aa		5.19	□□□□□ -1.58
NMD4	YLR363C	SWA2	Q06677	668 aa		5.19	□□□□□ -1.58
NMD4	YLR363C	APA1	P16550	321 aa	Known RBP	5.18	□□□□□ -1.58
NMD4	YLR363C	YMR147W	P40218	223 aa	Known RBP	5.18	□□□□□ -1.58
NMD4	YLR363C	VPS25	P47142	202 aa		5.18	□□□□□ -1.58
NMD4	YLR363C	ARC35	P53731	342 aa	Known RBP	5.18	□□□□□ -1.58
NMD4	YLR363C	CSL4	P53859	292 aa	Predicted RBP	5.18	□□□□□ -1.58
NMD4	YLR363C	MRD1	Q06106	887 aa	Known RBP	5.18	□□□□□ -1.58
NMD4	YLR363C	YLR049C	Q12110	428 aa		5.18	□□□□□ -1.58
NMD4	YLR363C	MTF2	P10849	440 aa		5.17	□□□□□ -1.58
NMD4	YLR363C	KRS1	P15180	591 aa	Known RBP	5.17	□□□□□ -1.58
NMD4	YLR363C	UIP5	P36137	443 aa		5.17	□□□□□ -1.58
NMD4	YLR363C	ASE1	P50275	885 aa		5.17	□□□□□ -1.58
NMD4	YLR363C	LSC1	P53598	329 aa	Known RBP	5.17	□□□□□ -1.58
NMD4	YLR363C	YVH1	Q02256	364 aa	Known RBP	5.17	□□□□□ -1.58
NMD4	YLR363C	NUP53	Q03790	475 aa		5.17	□□□□□ -1.58
NMD4	YLR363C	YLR455W	Q06188	304 aa		5.17	□□□□□ -1.58
NMD4	YLR363C	SNA4	Q07549	140 aa		5.17	□□□□□ -1.58
NMD4	YLR363C	GSH2	Q08220	491 aa		5.17	□□□□□ -1.58
NMD4	YLR363C	SRL1	Q08673	210 aa		5.17	□□□□□ -1.58
NMD4	YLR363C	TAH18	Q12181	623 aa		5.17	□□□□□ -1.58
NMD4	YLR363C	COX17	Q12287	69 aa		5.17	□□□□□ -1.58
NMD4	YLR363C	RAD61	Q99359	647 aa		5.17	□□□□□ -1.58
NMD4	YLR363C	TUS1	Q06412	1307 aa		5.17	□□□□□ -1.58
NMD4	YLR363C	TPK1	P06244	397 aa		5.16	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 14.3 ms