RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	CFD1	P40558	293 aa		5.25	□□□□□ -1.57
RRP40	YOL142W	UBX4	P54730	416 aa		5.25	□□□□□ -1.57
RRP40	YOL142W	APA1	P16550	321 aa	Known RBP	5.24	□□□□□ -1.57
RRP40	YOL142W	ACA1	P39970	489 aa		5.24	□□□□□ -1.57
RRP40	YOL142W	THI3	Q07471	609 aa		5.24	□□□□□ -1.57
RRP40	YOL142W	PFA4	Q12006	378 aa		5.24	□□□□□ -1.57
RRP40	YOL142W	GAL4	P04386	881 aa		5.23	□□□□□ -1.57
RRP40	YOL142W	YER190C-B	P0CX94	160 aa		5.23	□□□□□ -1.57
RRP40	YOL142W	YEL077W-A	P0CX95	160 aa		5.23	□□□□□ -1.57
RRP40	YOL142W	YGR296C-B	P0CX96	160 aa		5.23	□□□□□ -1.57
RRP40	YOL142W	YPL283W-B	P0CX97	160 aa		5.23	□□□□□ -1.57
RRP40	YOL142W	YPR204C-A	P0CX98	160 aa		5.23	□□□□□ -1.57
RRP40	YOL142W	ZAP1	P47043	880 aa		5.23	□□□□□ -1.57
RRP40	YOL142W	ORC5	P50874	479 aa		5.23	□□□□□ -1.57
RRP40	YOL142W	YPR003C	P53394	754 aa		5.23	□□□□□ -1.57
RRP40	YOL142W	TRS130	Q03660	1102 aa		5.23	□□□□□ -1.57
RRP40	YOL142W	YDR109C	Q04585	715 aa		5.23	□□□□□ -1.57
RRP40	YOL142W	STP3	Q05937	343 aa		5.23	□□□□□ -1.57
RRP40	YOL142W	GRX6	Q12438	231 aa		5.23	□□□□□ -1.57
RRP40	YOL142W	NCP1	P16603	691 aa	Known RBP	5.22	□□□□□ -1.57
RRP40	YOL142W	YNG2	P38806	282 aa	Known RBP	5.22	□□□□□ -1.57
RRP40	YOL142W	SPL2	P38839	148 aa		5.22	□□□□□ -1.57
RRP40	YOL142W	FLO5	P38894	1075 aa		5.22	□□□□□ -1.57
RRP40	YOL142W	PCI8	P40512	444 aa		5.22	□□□□□ -1.57
RRP40	YOL142W	FAF1	P40546	346 aa	Predicted RBP	5.22	□□□□□ -1.57
RRP40	YOL142W	MSY1	P48527	492 aa		5.22	□□□□□ -1.57
RRP40	YOL142W	MPS1	P54199	764 aa		5.22	□□□□□ -1.57
RRP40	YOL142W	FLO1	P32768	1537 aa		5.22	□□□□□ -1.57
RRP40	YOL142W	POM152	P39685	1337 aa		5.22	□□□□□ -1.57
RRP40	YOL142W	YPR089W	O13585	888 aa		5.21	□□□□□ -1.58
RRP40	YOL142W	PGI1	P12709	554 aa	Known RBP	5.21	□□□□□ -1.58
RRP40	YOL142W	MSM1	P22438	575 aa		5.21	□□□□□ -1.58
RRP40	YOL142W	RFA2	P26754	273 aa	Known RBP	5.21	□□□□□ -1.58
RRP40	YOL142W	KRE2	P27809	442 aa		5.21	□□□□□ -1.58
RRP40	YOL142W	ICL1	P28240	557 aa	Predicted RBP	5.21	□□□□□ -1.58
RRP40	YOL142W	MGM1	P32266	881 aa		5.21	□□□□□ -1.58
RRP40	YOL142W	SPC97	P38863	823 aa		5.21	□□□□□ -1.58
RRP40	YOL142W	YMR124W	P39523	943 aa	Known RBP	5.21	□□□□□ -1.58
RRP40	YOL142W	CDC1	P40986	491 aa		5.21	□□□□□ -1.58
RRP40	YOL142W	ERR3	P42222	437 aa		5.21	□□□□□ -1.58
RRP40	YOL142W	YJL107C	P42947	387 aa		5.21	□□□□□ -1.58
RRP40	YOL142W	SCW4	P53334	386 aa	Known RBP	5.21	□□□□□ -1.58
RRP40	YOL142W	CIA1	Q05583	330 aa		5.21	□□□□□ -1.58
RRP40	YOL142W	ATG23	Q06671	453 aa		5.21	□□□□□ -1.58
RRP40	YOL142W	HER1	Q12276	1246 aa		5.21	□□□□□ -1.58
RRP40	YOL142W	FLO11	P08640	1367 aa		5.2	□□□□□ -1.58
RRP40	YOL142W	YML003W	P0CF16	290 aa		5.2	□□□□□ -1.58
RRP40	YOL142W	MSS51	P32335	436 aa		5.2	□□□□□ -1.58
RRP40	YOL142W	RPT3	P33298	428 aa	Known RBP	5.2	□□□□□ -1.58
RRP40	YOL142W	ASK1	P35734	292 aa		5.2	□□□□□ -1.58
RRP40	YOL142W	ARN1	P38731	627 aa		5.2	□□□□□ -1.58
RRP40	YOL142W	SHC1	P39000	512 aa		5.2	□□□□□ -1.58
RRP40	YOL142W	DJP1	P40564	432 aa		5.2	□□□□□ -1.58
RRP40	YOL142W	RPT4	P53549	437 aa	Known RBP	5.2	□□□□□ -1.58
RRP40	YOL142W	VAM6	Q07468	1049 aa		5.2	□□□□□ -1.58
RRP40	YOL142W	BAG7	Q12128	409 aa		5.2	□□□□□ -1.58
RRP40	YOL142W	YCL049C	P25577	312 aa		5.19	□□□□□ -1.58
RRP40	YOL142W	LRE1	P25579	583 aa	Known RBP	5.19	□□□□□ -1.58
RRP40	YOL142W	ARC35	P53731	342 aa	Known RBP	5.19	□□□□□ -1.58
RRP40	YOL142W	RPL15B	P54780	204 aa	Predicted RBP	5.19	□□□□□ -1.58
RRP40	YOL142W	YPL068C	Q02749	293 aa		5.19	□□□□□ -1.58
RRP40	YOL142W	UBX2	Q04228	584 aa		5.19	□□□□□ -1.58
RRP40	YOL142W	YLR278C	Q05854	1341 aa		5.19	□□□□□ -1.58
RRP40	YOL142W	TOP1	P04786	769 aa		5.18	□□□□□ -1.58
RRP40	YOL142W	SUP35	P05453	685 aa	Known RBP	5.18	□□□□□ -1.58
RRP40	YOL142W	PCT1	P13259	424 aa		5.18	□□□□□ -1.58
RRP40	YOL142W	LCB1	P25045	558 aa	Known RBP	5.18	□□□□□ -1.58
RRP40	YOL142W	KTR3	P38130	404 aa	Predicted RBP	5.18	□□□□□ -1.58
RRP40	YOL142W	EXO84	P38261	753 aa		5.18	□□□□□ -1.58
RRP40	YOL142W	PHM8	P40025	321 aa		5.18	□□□□□ -1.58
RRP40	YOL142W	MRPL1	Q04599	285 aa		5.18	□□□□□ -1.58
RRP40	YOL142W	PDR8	Q06149	701 aa		5.18	□□□□□ -1.58
RRP40	YOL142W	CIR2	Q08822	631 aa		5.18	□□□□□ -1.58
RRP40	YOL142W	SNU66	Q12420	587 aa	Predicted RBP	5.18	□□□□□ -1.58
RRP40	YOL142W	RRI1	Q12468	440 aa		5.18	□□□□□ -1.58
RRP40	YOL142W	CNA1	P23287	553 aa		5.17	□□□□□ -1.58
RRP40	YOL142W	YSP3	P25036	478 aa		5.17	□□□□□ -1.58
RRP40	YOL142W	GEX2	P36173	615 aa		5.17	□□□□□ -1.58
RRP40	YOL142W	NPR3	P38742	1146 aa		5.17	□□□□□ -1.58
RRP40	YOL142W	TOM71	P38825	639 aa	Known RBP	5.17	□□□□□ -1.58
RRP40	YOL142W	PSF2	P40359	213 aa		5.17	□□□□□ -1.58
RRP40	YOL142W	TPM2	P40414	161 aa		5.17	□□□□□ -1.58
RRP40	YOL142W	VTC3	Q02725	835 aa		5.17	□□□□□ -1.58
RRP40	YOL142W	IRC4	Q03036	179 aa		5.17	□□□□□ -1.58
RRP40	YOL142W	SWT1	Q12104	458 aa		5.17	□□□□□ -1.58
RRP40	YOL142W	ATP2	P00830	511 aa	Known RBP	5.16	□□□□□ -1.58
RRP40	YOL142W	YPT1	P01123	206 aa	Known RBP	5.16	□□□□□ -1.58
RRP40	YOL142W	NUC1	P08466	329 aa		5.16	□□□□□ -1.58
RRP40	YOL142W	CDC16	P09798	840 aa		5.16	□□□□□ -1.58
RRP40	YOL142W	AIM17	P23180	465 aa	Known RBP	5.16	□□□□□ -1.58
RRP40	YOL142W	YCP4	P25349	247 aa	Known RBP	5.16	□□□□□ -1.58
RRP40	YOL142W	OCT1	P35999	772 aa		5.16	□□□□□ -1.58
RRP40	YOL142W	MRPL36	P36531	177 aa		5.16	□□□□□ -1.58
RRP40	YOL142W	TPA1	P40032	644 aa	Known RBP	5.16	□□□□□ -1.58
RRP40	YOL142W	YIL161W	P40449	235 aa	Known RBP	5.16	□□□□□ -1.58
RRP40	YOL142W	BLS1	Q06071	122 aa		5.16	□□□□□ -1.58
RRP40	YOL142W	SUI3	P09064	285 aa	Known RBP	5.15	□□□□□ -1.59
RRP40	YOL142W	DBF20	P32328	564 aa		5.15	□□□□□ -1.59
RRP40	YOL142W	NUP120	P35729	1037 aa		5.15	□□□□□ -1.59
RRP40	YOL142W	IRC8	P47046	822 aa		5.15	□□□□□ -1.59

Retrieved 100 of 5,963 RNA–protein pairs in 26.8 ms