RNA–Protein interactions for RNA: YKR043C

SHB17, Transcript of Sedoheptulose bisphosphatase involved in riboneogenesis, yeast

Gene SHB17, Length 816 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHB17	YKR043C	YPR089W	O13585	888 aa		10.16	□□□□□ -0.78
SHB17	YKR043C	CPA1	P07258	411 aa	Known RBP	10.16	□□□□□ -0.78
SHB17	YKR043C	VAN1	P23642	535 aa		10.16	□□□□□ -0.78
SHB17	YKR043C	TFC3	P34111	1160 aa		10.16	□□□□□ -0.78
SHB17	YKR043C	GMH1	P36125	273 aa		10.16	□□□□□ -0.78
SHB17	YKR043C	SMX2	P40204	77 aa	Known RBP	10.16	□□□□□ -0.78
SHB17	YKR043C	YIL108W	P40483	696 aa	Known RBP	10.16	□□□□□ -0.78
SHB17	YKR043C	ARX1	Q03862	593 aa	Known RBP	10.16	□□□□□ -0.78
SHB17	YKR043C	FRA1	Q07825	749 aa		10.16	□□□□□ -0.78
SHB17	YKR043C	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	10.16	□□□□□ -0.78	not detected
SHB17	YKR043C	SBP1	P10080	294 aa	Known RBP	10.15	□□□□□ -0.78
SHB17	YKR043C	PHO3	P24031	467 aa		10.15	□□□□□ -0.78
SHB17	YKR043C	ERG6	P25087	383 aa	Known RBP	10.15	□□□□□ -0.78
SHB17	YKR043C	PHO84	P25297	587 aa	Known RBP	10.15	□□□□□ -0.78
SHB17	YKR043C	BEM3	P32873	1128 aa		10.15	□□□□□ -0.78
SHB17	YKR043C	ETR1	P38071	380 aa		10.15	□□□□□ -0.78
SHB17	YKR043C	MNN1	P39106	762 aa		10.15	□□□□□ -0.78
SHB17	YKR043C	CTK3	P46963	296 aa	Predicted RBP	10.15	□□□□□ -0.78
SHB17	YKR043C	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	10.15	□□□□□ -0.78	not detected
SHB17	YKR043C	BLS1	Q06071	122 aa		10.15	□□□□□ -0.78
SHB17	YKR043C	VTA1	Q06263	330 aa		10.15	□□□□□ -0.78
SHB17	YKR043C	YET3	Q07451	203 aa		10.15	□□□□□ -0.78
SHB17	YKR043C	RPN8	Q08723	338 aa	Known RBP	10.15	□□□□□ -0.78
SHB17	YKR043C	TFB4	Q12004	338 aa		10.15	□□□□□ -0.78
SHB17	YKR043C	NUS1	Q12063	375 aa		10.15	□□□□□ -0.78
SHB17	YKR043C	RTK1	Q12100	620 aa	Predicted RBP	10.15	□□□□□ -0.78
SHB17	YKR043C	STE2	D6VTK4	431 aa		10.14	□□□□□ -0.79
SHB17	YKR043C	MRPL25	P23369	157 aa		10.14	□□□□□ -0.79
SHB17	YKR043C	MF(ALPHA)2	P32435	120 aa		10.14	□□□□□ -0.79
SHB17	YKR043C	UBP14	P38237	781 aa	Known RBP	10.14	□□□□□ -0.79
SHB17	YKR043C	SUM1	P46676	1062 aa		10.14	□□□□□ -0.79
SHB17	YKR043C	BIR1	P47134	954 aa		10.14	□□□□□ -0.79
SHB17	YKR043C	BUD32	P53323	261 aa		10.14	□□□□□ -0.79
SHB17	YKR043C	SUN4	P53616	420 aa		10.14	□□□□□ -0.79
SHB17	YKR043C	SPP2	Q02521	185 aa		10.14	□□□□□ -0.79
SHB17	YKR043C	CCE1	Q03702	353 aa		10.14	□□□□□ -0.79
SHB17	YKR043C	RCO1	Q04779	684 aa		10.14	□□□□□ -0.79
SHB17	YKR043C	OPT2	Q06593	877 aa		10.14	□□□□□ -0.79
SHB17	YKR043C	GTT2	Q12390	233 aa		10.14	□□□□□ -0.79
SHB17	YKR043C	SEM1	O94742	89 aa		10.13	□□□□□ -0.79
SHB17	YKR043C	SFP1	P32432	683 aa		10.13	□□□□□ -0.79
SHB17	YKR043C	RIM1	P32445	135 aa	Known RBP	10.13	□□□□□ -0.79
SHB17	YKR043C	SPR1	P32603	445 aa		10.13	□□□□□ -0.79
SHB17	YKR043C	CCT2	P39076	527 aa	Known RBP	10.13	□□□□□ -0.79
SHB17	YKR043C	PET130	P47065	347 aa		10.13	□□□□□ -0.79
SHB17	YKR043C	URB2	P47108	1174 aa		10.13	□□□□□ -0.79
SHB17	YKR043C	ADE12	P80210	433 aa	Known RBP	10.13	□□□□□ -0.79
SHB17	YKR043C	BUD22	Q04347	519 aa	Known RBP	10.13	□□□□□ -0.79
SHB17	YKR043C	PLB3	Q08108	686 aa		10.13	□□□□□ -0.79
SHB17	YKR043C	ARG4	P04076	463 aa	Predicted RBP	10.12	□□□□□ -0.79
SHB17	YKR043C	ILV2	P07342	687 aa	Known RBP	10.12	□□□□□ -0.79
SHB17	YKR043C	YSR3	P23501	404 aa		10.12	□□□□□ -0.79
SHB17	YKR043C	SEC14	P24280	304 aa	Known RBP	10.12	□□□□□ -0.79
SHB17	YKR043C	LRG1	P35688	1017 aa		10.12	□□□□□ -0.79
SHB17	YKR043C	YPT35	P38815	214 aa	Known RBP	10.12	□□□□□ -0.79
SHB17	YKR043C	CIS3	P47001	227 aa		10.12	□□□□□ -0.79
SHB17	YKR043C	YDR444W	Q04093	687 aa		10.12	□□□□□ -0.79
SHB17	YKR043C	THI73	Q07904	523 aa		10.12	□□□□□ -0.79
SHB17	YKR043C	YOR012W	Q12351	137 aa		10.12	□□□□□ -0.79
SHB17	YKR043C	SNF5	P18480	905 aa		10.11	□□□□□ -0.79
SHB17	YKR043C	VPS34	P22543	875 aa		10.11	□□□□□ -0.79
SHB17	YKR043C	HRR25	P29295	494 aa	Known RBP	10.11	□□□□□ -0.79
SHB17	YKR043C	GCD11	P32481	527 aa	Known RBP	10.11	□□□□□ -0.79
SHB17	YKR043C	TIP20	P33891	701 aa		10.11	□□□□□ -0.79
SHB17	YKR043C	MUM2	P38236	366 aa		10.11	□□□□□ -0.79
SHB17	YKR043C	SPC97	P38863	823 aa		10.11	□□□□□ -0.79
SHB17	YKR043C	SSN3	P39073	555 aa		10.11	□□□□□ -0.79
SHB17	YKR043C	HAT2	P39984	401 aa		10.11	□□□□□ -0.79
SHB17	YKR043C	LTP1	P40347	161 aa		10.11	□□□□□ -0.79
SHB17	YKR043C	USA1	Q03714	838 aa		10.11	□□□□□ -0.79
SHB17	YKR043C	MRH1	Q12117	320 aa	Predicted RBP	10.11	□□□□□ -0.79
SHB17	YKR043C	UPC2	Q12151	913 aa		10.11	□□□□□ -0.79
SHB17	YKR043C	YMR030W-A	Q3E760	96 aa		10.11	□□□□□ -0.79
SHB17	YKR043C	SSC1	P0CS90	654 aa	Known RBP	10.1	□□□□□ -0.79
SHB17	YKR043C	ABF1	P14164	731 aa		10.1	□□□□□ -0.79
SHB17	YKR043C	TRM1	P15565	570 aa	Known RBP	10.1	□□□□□ -0.79
SHB17	YKR043C	SCL1	P21243	252 aa	Known RBP	10.1	□□□□□ -0.79
SHB17	YKR043C	CYM1	P32898	989 aa		10.1	□□□□□ -0.79
SHB17	YKR043C	ERV46	P39727	415 aa		10.1	□□□□□ -0.79
SHB17	YKR043C	SSP120	P39931	234 aa	Known RBP	10.1	□□□□□ -0.79
SHB17	YKR043C	YEL073C	P39974	107 aa		10.1	□□□□□ -0.79
SHB17	YKR043C	LSM5	P40089	93 aa	Known RBP	10.1	□□□□□ -0.79
SHB17	YKR043C	YJL107C	P42947	387 aa		10.1	□□□□□ -0.79
SHB17	YKR043C	YML096W	Q04489	525 aa		10.1	□□□□□ -0.79
SHB17	YKR043C	SLP1	Q12232	587 aa		10.1	□□□□□ -0.79
SHB17	YKR043C	ICT1	Q12385	394 aa		10.1	□□□□□ -0.79
SHB17	YKR043C	SEC53	P07283	254 aa	Known RBP	10.09	□□□□□ -0.79
SHB17	YKR043C	RDS2	P19541	446 aa	Known RBP	10.09	□□□□□ -0.79
SHB17	YKR043C	AMD2	P22580	549 aa		10.09	□□□□□ -0.79
SHB17	YKR043C	ILV6	P25605	309 aa	Known RBP	10.09	□□□□□ -0.79
SHB17	YKR043C	THI80	P35202	319 aa		10.09	□□□□□ -0.79
SHB17	YKR043C	ELO1	P39540	310 aa		10.09	□□□□□ -0.79
SHB17	YKR043C	HOS4	P40480	1083 aa		10.09	□□□□□ -0.79
SHB17	YKR043C	SEC28	P40509	296 aa	Known RBP	10.09	□□□□□ -0.79
SHB17	YKR043C	NUP85	P46673	744 aa		10.09	□□□□□ -0.79
SHB17	YKR043C	NNF1	P47149	201 aa		10.09	□□□□□ -0.79
SHB17	YKR043C	LSC1	P53598	329 aa	Known RBP	10.09	□□□□□ -0.79
SHB17	YKR043C	BIO4	P53630	237 aa		10.09	□□□□□ -0.79
SHB17	YKR043C	ZRG17	P53735	605 aa		10.09	□□□□□ -0.79
SHB17	YKR043C	EAF1	Q06337	982 aa		10.09	□□□□□ -0.79

Retrieved 100 of 5,963 RNA–protein pairs in 42.4 ms