RNA–Protein interactions for RNA: YLR351C

NIT3, Transcript of Nit protein, yeast

Gene NIT3, Length 876 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NIT3	YLR351C	THI7	Q05998	598 aa		4.7	□□□□□ -1.66
NIT3	YLR351C	YDL121C	Q07541	149 aa		4.7	□□□□□ -1.66
NIT3	YLR351C	HSP33	Q08914	237 aa	Known RBP	4.7	□□□□□ -1.66
NIT3	YLR351C	HSP32	Q08992	237 aa		4.7	□□□□□ -1.66
NIT3	YLR351C	NBP2	Q12163	236 aa		4.7	□□□□□ -1.66
NIT3	YLR351C	YOL087C	Q99247	1116 aa		4.7	□□□□□ -1.66
NIT3	YLR351C	RKR1	Q04781	1562 aa		4.7	□□□□□ -1.66
NIT3	YLR351C	NUP1	P20676	1076 aa		4.69	□□□□□ -1.66
NIT3	YLR351C	MBR1	P23493	339 aa		4.69	□□□□□ -1.66
NIT3	YLR351C	ERG8	P24521	451 aa		4.69	□□□□□ -1.66
NIT3	YLR351C	PFK26	P40433	827 aa	Known RBP	4.69	□□□□□ -1.66
NIT3	YLR351C	CIN1	P40987	1014 aa		4.69	□□□□□ -1.66
NIT3	YLR351C	NMD5	P46970	1048 aa		4.69	□□□□□ -1.66
NIT3	YLR351C	MEP3	P53390	489 aa		4.69	□□□□□ -1.66
NIT3	YLR351C	LGE1	Q02796	332 aa	Known RBP	4.69	□□□□□ -1.66
NIT3	YLR351C	CRN1	Q06440	651 aa		4.69	□□□□□ -1.66
NIT3	YLR351C	SWA2	Q06677	668 aa		4.69	□□□□□ -1.66
NIT3	YLR351C	BUD21	Q08492	214 aa	Predicted RBP	4.69	□□□□□ -1.66
NIT3	YLR351C	VCX1	Q99385	411 aa		4.69	□□□□□ -1.66
NIT3	YLR351C	CDC25	P04821	1589 aa		4.69	□□□□□ -1.66
NIT3	YLR351C	PAN1	P32521	1480 aa		4.69	□□□□□ -1.66
NIT3	YLR351C	FUM1	P08417	488 aa	Known RBP	4.68	□□□□□ -1.66
NIT3	YLR351C	RPB2	P08518	1224 aa	Known RBP	4.68	□□□□□ -1.66
NIT3	YLR351C	ILS1	P09436	1072 aa	Known RBP	4.68	□□□□□ -1.66
NIT3	YLR351C	PCT1	P13259	424 aa		4.68	□□□□□ -1.66
NIT3	YLR351C	URE2	P23202	354 aa	Known RBP	4.68	□□□□□ -1.66
NIT3	YLR351C	CDC15	P27636	974 aa		4.68	□□□□□ -1.66
NIT3	YLR351C	PSD1	P39006	500 aa		4.68	□□□□□ -1.66
NIT3	YLR351C	IRC7	P43623	340 aa		4.68	□□□□□ -1.66
NIT3	YLR351C	SNU56	Q03782	492 aa	Known RBP	4.68	□□□□□ -1.66
NIT3	YLR351C	THI3	Q07471	609 aa		4.68	□□□□□ -1.66
NIT3	YLR351C	MET5	P47169	1442 aa		4.68	□□□□□ -1.66
NIT3	YLR351C	SMC4	Q12267	1418 aa		4.68	□□□□□ -1.66
NIT3	YLR351C	SUI3	P09064	285 aa	Known RBP	4.67	□□□□□ -1.66
NIT3	YLR351C	SRP54	P20424	541 aa	Known RBP	4.67	□□□□□ -1.66
NIT3	YLR351C	AAP1	P37898	856 aa	Known RBP	4.67	□□□□□ -1.66
NIT3	YLR351C	SNO3	P43544	222 aa		4.67	□□□□□ -1.66
NIT3	YLR351C	ORC5	P50874	479 aa		4.67	□□□□□ -1.66
NIT3	YLR351C	YPR003C	P53394	754 aa		4.67	□□□□□ -1.66
NIT3	YLR351C	FRE7	Q12333	620 aa		4.67	□□□□□ -1.66
NIT3	YLR351C	STU1	P38198	1513 aa		4.67	□□□□□ -1.66
NIT3	YLR351C	CHS3	P29465	1165 aa		4.66	□□□□□ -1.66
NIT3	YLR351C	MSS51	P32335	436 aa		4.66	□□□□□ -1.66
NIT3	YLR351C	MRP20	P32387	263 aa		4.66	□□□□□ -1.66
NIT3	YLR351C	SEC31	P38968	1273 aa	Known RBP	4.66	□□□□□ -1.66
NIT3	YLR351C	ERV46	P39727	415 aa		4.66	□□□□□ -1.66
NIT3	YLR351C	MRX1	P40050	688 aa		4.66	□□□□□ -1.66
NIT3	YLR351C	YJR061W	P40355	935 aa		4.66	□□□□□ -1.66
NIT3	YLR351C	DPH1	P40487	425 aa	Known RBP	4.66	□□□□□ -1.66
NIT3	YLR351C	IDP3	P53982	420 aa	Known RBP	4.66	□□□□□ -1.66
NIT3	YLR351C	FCP1	Q03254	732 aa		4.66	□□□□□ -1.66
NIT3	YLR351C	RIM13	Q03792	727 aa		4.66	□□□□□ -1.66
NIT3	YLR351C	PSK2	Q08217	1101 aa		4.66	□□□□□ -1.66
NIT3	YLR351C	YOR1	P53049	1477 aa		4.66	□□□□□ -1.66
NIT3	YLR351C	ESC1	Q03661	1658 aa	Known RBP	4.65	□□□□□ -1.66
NIT3	YLR351C	MMS22	Q06164	1454 aa		4.65	□□□□□ -1.66
NIT3	YLR351C	MRP2	P10663	115 aa	Predicted RBP	4.65	□□□□□ -1.67
NIT3	YLR351C	GFD2	P25370	566 aa	Known RBP	4.65	□□□□□ -1.67
NIT3	YLR351C	SOF1	P33750	489 aa	Known RBP	4.65	□□□□□ -1.67
NIT3	YLR351C	LHS1	P36016	881 aa		4.65	□□□□□ -1.67
NIT3	YLR351C	NTR2	P36118	322 aa	Predicted RBP	4.65	□□□□□ -1.67
NIT3	YLR351C	BSC5	P53755	489 aa		4.65	□□□□□ -1.67
NIT3	YLR351C	MUB1	Q03162	620 aa		4.65	□□□□□ -1.67
NIT3	YLR351C	RPA190	P10964	1664 aa	Known RBP	4.64	□□□□□ -1.67
NIT3	YLR351C	SWE1	P32944	819 aa		4.64	□□□□□ -1.67
NIT3	YLR351C	NAB3	P38996	802 aa	Known RBP RIP-Chip data	4.64	□□□□□ -1.67	not detected
NIT3	YLR351C	LTP1	P40347	161 aa		4.64	□□□□□ -1.67
NIT3	YLR351C	MNT3	P40549	630 aa		4.64	□□□□□ -1.67
NIT3	YLR351C	CDC1	P40986	491 aa		4.64	□□□□□ -1.67
NIT3	YLR351C	IME4	P41833	600 aa		4.64	□□□□□ -1.67
NIT3	YLR351C	SWP82	P43554	623 aa		4.64	□□□□□ -1.67
NIT3	YLR351C	RPN11	P43588	306 aa	Known RBP	4.64	□□□□□ -1.67
NIT3	YLR351C	SIP4	P46954	829 aa		4.64	□□□□□ -1.67
NIT3	YLR351C	YNR061C	P53747	219 aa		4.64	□□□□□ -1.67
NIT3	YLR351C	ERG13	P54839	491 aa	Known RBP	4.64	□□□□□ -1.67
NIT3	YLR351C	RSC9	Q03124	581 aa		4.64	□□□□□ -1.67
NIT3	YLR351C	SKM1	Q12469	655 aa		4.64	□□□□□ -1.67
NIT3	YLR351C	YOR019W	Q99248	730 aa		4.64	□□□□□ -1.67
NIT3	YLR351C	DNF1	P32660	1571 aa		4.64	□□□□□ -1.67
NIT3	YLR351C	YBR085C-A	O43137	85 aa		4.63	□□□□□ -1.67
NIT3	YLR351C	ALY1	P36117	915 aa		4.63	□□□□□ -1.67
NIT3	YLR351C	ADE17	P38009	592 aa	Known RBP	4.63	□□□□□ -1.67
NIT3	YLR351C	UBP13	P38187	747 aa		4.63	□□□□□ -1.67
NIT3	YLR351C	ARN1	P38731	627 aa		4.63	□□□□□ -1.67
NIT3	YLR351C	SLZ1	P40167	298 aa		4.63	□□□□□ -1.67
NIT3	YLR351C	ULP2	P40537	1034 aa	Predicted RBP	4.63	□□□□□ -1.67
NIT3	YLR351C	YJL107C	P42947	387 aa		4.63	□□□□□ -1.67
NIT3	YLR351C	ARC1	P46672	376 aa	Known RBP	4.63	□□□□□ -1.67
NIT3	YLR351C	AAD10	P47182	288 aa		4.63	□□□□□ -1.67
NIT3	YLR351C	RSM28	Q03430	361 aa		4.63	□□□□□ -1.67
NIT3	YLR351C	YDR056C	Q12025	205 aa		4.63	□□□□□ -1.67
NIT3	YLR351C	TY1B-JR2	P47100	1755 aa	Known RBP	4.63	□□□□□ -1.67
NIT3	YLR351C	TY1B-ER2	Q03619	1755 aa		4.63	□□□□□ -1.67
NIT3	YLR351C	TY1B-MR1	Q04214	1755 aa		4.63	□□□□□ -1.67
NIT3	YLR351C	TY1B-MR2	Q04670	1755 aa	Known RBP	4.63	□□□□□ -1.67
NIT3	YLR351C	TY1B-LR1	Q12088	1755 aa	Known RBP	4.63	□□□□□ -1.67
NIT3	YLR351C	TY1B-NL1	Q12112	1755 aa		4.63	□□□□□ -1.67
NIT3	YLR351C	TY1B-GR1	Q12141	1755 aa		4.63	□□□□□ -1.67
NIT3	YLR351C	TY1B-BL	Q12490	1755 aa		4.63	□□□□□ -1.67
NIT3	YLR351C	COQ3	P27680	312 aa		4.62	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 18.7 ms