RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	YJU2	P28320	278 aa	Predicted RBP	3.89	□□□□□ -1.79
NUP85	YJR042W	MSP1	P28737	362 aa		3.89	□□□□□ -1.79
NUP85	YJR042W	RMA1	P36001	430 aa	Known RBP	3.89	□□□□□ -1.79
NUP85	YJR042W	OTU2	P38747	307 aa	Known RBP	3.89	□□□□□ -1.79
NUP85	YJR042W	RGI2	P40188	164 aa		3.89	□□□□□ -1.79
NUP85	YJR042W	MET12	P46151	657 aa		3.89	□□□□□ -1.79
NUP85	YJR042W	YJL045W	P47052	634 aa		3.89	□□□□□ -1.79
NUP85	YJR042W	COG1	P53079	417 aa		3.89	□□□□□ -1.79
NUP85	YJR042W	CUL3	P53202	744 aa		3.89	□□□□□ -1.79
NUP85	YJR042W	YGR045C	P53229	120 aa		3.89	□□□□□ -1.79
NUP85	YJR042W	TAM41	P53230	385 aa		3.89	□□□□□ -1.79
NUP85	YJR042W	CSL4	P53859	292 aa	Predicted RBP	3.89	□□□□□ -1.79
NUP85	YJR042W	DAK1	P54838	584 aa	Known RBP	3.89	□□□□□ -1.79
NUP85	YJR042W	REX2	P54964	269 aa	Known RBP	3.89	□□□□□ -1.79
NUP85	YJR042W	ROY1	Q04847	553 aa		3.89	□□□□□ -1.79
NUP85	YJR042W	SEC53	P07283	254 aa	Known RBP	3.89	□□□□□ -1.79
NUP85	YJR042W	RPL1A	P0CX43	217 aa	Known RBP	3.89	□□□□□ -1.79
NUP85	YJR042W	RPL1B	P0CX44	217 aa	Known RBP	3.89	□□□□□ -1.79
NUP85	YJR042W	BUD2	P33314	1104 aa		3.89	□□□□□ -1.79
NUP85	YJR042W	LOT5	P34234	306 aa		3.89	□□□□□ -1.79
NUP85	YJR042W	AHP1	P38013	176 aa	Known RBP	3.89	□□□□□ -1.79
NUP85	YJR042W	CDS1	P38221	457 aa		3.89	□□□□□ -1.79
NUP85	YJR042W	YDR089W	P38966	869 aa		3.89	□□□□□ -1.79
NUP85	YJR042W	SLN1	P39928	1220 aa	Predicted RBP	3.89	□□□□□ -1.79
NUP85	YJR042W	SSP120	P39931	234 aa	Known RBP	3.89	□□□□□ -1.79
NUP85	YJR042W	LEM3	P42838	414 aa		3.89	□□□□□ -1.79
NUP85	YJR042W	BRE2	P43132	505 aa		3.89	□□□□□ -1.79
NUP85	YJR042W	PEF1	P53238	335 aa		3.89	□□□□□ -1.79
NUP85	YJR042W	NOG2	P53742	486 aa	Known RBP	3.89	□□□□□ -1.79
NUP85	YJR042W	EOS1	P53938	366 aa		3.89	□□□□□ -1.79
NUP85	YJR042W	MSC3	Q05812	728 aa		3.89	□□□□□ -1.79
NUP85	YJR042W	VAM6	Q07468	1049 aa		3.89	□□□□□ -1.79
NUP85	YJR042W	RTC5	Q12108	567 aa	Known RBP	3.89	□□□□□ -1.79
NUP85	YJR042W	LEU9	Q12166	604 aa	Known RBP	3.89	□□□□□ -1.79
NUP85	YJR042W	YOR022C	Q12204	715 aa		3.89	□□□□□ -1.79
NUP85	YJR042W	SKM1	Q12469	655 aa		3.89	□□□□□ -1.79
NUP85	YJR042W	TY2A-LR1	P0C2J4	438 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	TY2A-F	P0CX61	438 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	TY2A-GR2	P0CX62	438 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	CDC24	P11433	854 aa	Predicted RBP	3.88	□□□□□ -1.79
NUP85	YJR042W	CPR2	P23285	205 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	NFS1	P25374	497 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	TY2A-C	P25383	438 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	CRM1	P30822	1084 aa	Known RBP	3.88	□□□□□ -1.79
NUP85	YJR042W	RPD3	P32561	433 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	CST26	P38226	397 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	NTC20	P38302	140 aa	Predicted RBP	3.88	□□□□□ -1.79
NUP85	YJR042W	RFC3	P38629	340 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	MIP6	P38760	659 aa	Known RBP	3.88	□□□□□ -1.79
NUP85	YJR042W	UME6	P39001	836 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	KEL2	P50090	882 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	YBP2	P53169	641 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	TY2A-DR2	Q03483	438 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	MGR3	Q04472	501 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	SOV1	Q04748	898 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	TRI1	Q05024	226 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	RSB1	Q08417	382 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	TY2A-B	Q12260	438 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	TY2A-OR2	Q12293	438 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	TY2A-DR1	Q12392	438 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	TY2A-OR1	Q12439	438 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	AVL9	Q12500	764 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	ATG11	Q12527	1178 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	YOR111W	Q99210	232 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	TY2A-DR3	Q99303	438 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	VCX1	Q99385	411 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	RAD50	P12753	1312 aa		3.88	□□□□□ -1.79
NUP85	YJR042W	SPS22	P25380	463 aa		3.87	□□□□□ -1.79
NUP85	YJR042W	DMC1	P25453	334 aa		3.87	□□□□□ -1.79
NUP85	YJR042W	YCR051W	P25631	222 aa		3.87	□□□□□ -1.79
NUP85	YJR042W	MRPL40	P36534	297 aa		3.87	□□□□□ -1.79
NUP85	YJR042W	MRPL16	P38064	232 aa		3.87	□□□□□ -1.79
NUP85	YJR042W	REI1	P38344	393 aa	Predicted RBP	3.87	□□□□□ -1.79
NUP85	YJR042W	DED81	P38707	554 aa	Known RBP	3.87	□□□□□ -1.79
NUP85	YJR042W	MTG2	P38860	518 aa		3.87	□□□□□ -1.79
NUP85	YJR042W	SET5	P38890	526 aa	Known RBP	3.87	□□□□□ -1.79
NUP85	YJR042W	MPT5	P39016	859 aa	Known RBP RIP-Chip data	3.87	□□□□□ -1.79	RIP-Chip
NUP85	YJR042W	RRT14	P40470	206 aa		3.87	□□□□□ -1.79
NUP85	YJR042W	BUD8	P41698	603 aa		3.87	□□□□□ -1.79
NUP85	YJR042W	GCV1	P48015	400 aa		3.87	□□□□□ -1.79
NUP85	YJR042W	TEL2	P53038	688 aa		3.87	□□□□□ -1.79
NUP85	YJR042W	ADA2	Q02336	434 aa		3.87	□□□□□ -1.79
NUP85	YJR042W	YMR111C	Q04461	462 aa	Predicted RBP	3.87	□□□□□ -1.79
NUP85	YJR042W	RCO1	Q04779	684 aa		3.87	□□□□□ -1.79
NUP85	YJR042W	ADY4	Q05955	493 aa		3.87	□□□□□ -1.79
NUP85	YJR042W	MRD1	Q06106	887 aa	Known RBP	3.87	□□□□□ -1.79
NUP85	YJR042W	RUD3	Q12234	484 aa	Known RBP	3.87	□□□□□ -1.79
NUP85	YJR042W	DUR1,2	P32528	1835 aa	Known RBP	3.87	□□□□□ -1.79
NUP85	YJR042W	CDC19	P00549	500 aa	Known RBP	3.87	□□□□□ -1.79
NUP85	YJR042W	RPS19A	P07280	144 aa	Known RBP	3.87	□□□□□ -1.79
NUP85	YJR042W	RPS19B	P07281	144 aa	Predicted RBP	3.87	□□□□□ -1.79
NUP85	YJR042W	ERG8	P24521	451 aa		3.87	□□□□□ -1.79
NUP85	YJR042W	MMS4	P38257	691 aa		3.87	□□□□□ -1.79
NUP85	YJR042W	GID8	P40208	455 aa		3.87	□□□□□ -1.79
NUP85	YJR042W	PRK1	P40494	810 aa		3.87	□□□□□ -1.79
NUP85	YJR042W	CLA4	P48562	842 aa		3.87	□□□□□ -1.79
NUP85	YJR042W	LCL3	P53153	274 aa		3.87	□□□□□ -1.79
NUP85	YJR042W	MUB1	Q03162	620 aa		3.87	□□□□□ -1.79
NUP85	YJR042W	CWC21	Q03375	135 aa	Known RBP	3.87	□□□□□ -1.79
NUP85	YJR042W	EFR3	Q03653	782 aa	Known RBP	3.87	□□□□□ -1.79

Retrieved 100 of 5,963 RNA–protein pairs in 15.6 ms