RNA–Protein interactions for RNA: YGL244W

RTF1, Transcript of Subunit of RNAPII-associated chromatin remodeling Paf1 complex, yeast

Gene RTF1, Length 1,677 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RTF1	YGL244W	YHI9	P38765	294 aa		11.51	□□□□□ -0.57
RTF1	YGL244W	PEX18	P38855	283 aa		11.51	□□□□□ -0.57
RTF1	YGL244W	YHR182W	P38870	785 aa		11.51	□□□□□ -0.57
RTF1	YGL244W	ECM10	P39987	644 aa		11.51	□□□□□ -0.57
RTF1	YGL244W	SEC28	P40509	296 aa	Known RBP	11.51	□□□□□ -0.57
RTF1	YGL244W	VHR1	P40522	640 aa		11.51	□□□□□ -0.57
RTF1	YGL244W	AIF1	P52923	378 aa		11.51	□□□□□ -0.57
RTF1	YGL244W	YMR321C	Q04898	105 aa		11.51	□□□□□ -0.57
RTF1	YGL244W	YCS4	Q06156	1176 aa		11.51	□□□□□ -0.57
RTF1	YGL244W	GYP1	Q08484	637 aa		11.51	□□□□□ -0.57
RTF1	YGL244W	CMR1	Q12510	522 aa	Known RBP	11.51	□□□□□ -0.57
RTF1	YGL244W	SSE2	P32590	693 aa	Known RBP	11.5	□□□□□ -0.57
RTF1	YGL244W	PEX6	P33760	1030 aa		11.5	□□□□□ -0.57
RTF1	YGL244W	BIT2	P38346	545 aa		11.5	□□□□□ -0.57
RTF1	YGL244W	PPE1	P38796	400 aa		11.5	□□□□□ -0.57
RTF1	YGL244W	MNN11	P46985	422 aa	Known RBP	11.5	□□□□□ -0.57
RTF1	YGL244W	SED5	Q01590	340 aa		11.5	□□□□□ -0.57
RTF1	YGL244W	CWC21	Q03375	135 aa	Known RBP	11.5	□□□□□ -0.57
RTF1	YGL244W	HDA3	Q06623	655 aa		11.5	□□□□□ -0.57
RTF1	YGL244W	YDL114W	Q07530	308 aa		11.5	□□□□□ -0.57
RTF1	YGL244W	ULA1	Q12059	462 aa		11.5	□□□□□ -0.57
RTF1	YGL244W	SPE3	Q12074	293 aa	Known RBP	11.5	□□□□□ -0.57
RTF1	YGL244W	EFG1	Q3E705	233 aa	Known RBP	11.5	□□□□□ -0.57
RTF1	YGL244W	COX6	P00427	148 aa		11.49	□□□□□ -0.57
RTF1	YGL244W	KSS1	P14681	368 aa		11.49	□□□□□ -0.57
RTF1	YGL244W	TYE7	P33122	291 aa	Predicted RBP	11.49	□□□□□ -0.57
RTF1	YGL244W	GRS1	P38088	690 aa	Known RBP	11.49	□□□□□ -0.57
RTF1	YGL244W	ETP1	P38748	585 aa	Known RBP	11.49	□□□□□ -0.57
RTF1	YGL244W	PRM2	P40534	656 aa		11.49	□□□□□ -0.57
RTF1	YGL244W	AGP3	P43548	558 aa		11.49	□□□□□ -0.57
RTF1	YGL244W	IRC5	P43610	853 aa		11.49	□□□□□ -0.57
RTF1	YGL244W	YNL115C	P53925	644 aa		11.49	□□□□□ -0.57
RTF1	YGL244W	INA17	Q02888	182 aa		11.49	□□□□□ -0.57
RTF1	YGL244W	CDD1	Q06549	142 aa		11.49	□□□□□ -0.57
RTF1	YGL244W	LOT6	Q07923	191 aa		11.49	□□□□□ -0.57
RTF1	YGL244W	YEH2	Q07950	538 aa		11.49	□□□□□ -0.57
RTF1	YGL244W	ESA1	Q08649	445 aa		11.49	□□□□□ -0.57
RTF1	YGL244W	REC8	Q12188	680 aa		11.49	□□□□□ -0.57
RTF1	YGL244W	TPK2	P06245	380 aa		11.49	□□□□□ -0.57
RTF1	YGL244W	BCY1	P07278	416 aa	Known RBP	11.49	□□□□□ -0.57
RTF1	YGL244W	BUD23	P25627	275 aa	Predicted RBP	11.49	□□□□□ -0.57
RTF1	YGL244W	BRF1	P29056	596 aa		11.49	□□□□□ -0.57
RTF1	YGL244W	NDI1	P32340	513 aa		11.49	□□□□□ -0.57
RTF1	YGL244W	WHI3	P34761	661 aa	Known RBP	11.49	□□□□□ -0.57
RTF1	YGL244W	AGP2	P38090	596 aa		11.49	□□□□□ -0.57
RTF1	YGL244W	BRL1	P38770	471 aa		11.49	□□□□□ -0.57
RTF1	YGL244W	CYC2	P38909	366 aa		11.49	□□□□□ -0.57
RTF1	YGL244W	SWP82	P43554	623 aa		11.49	□□□□□ -0.57
RTF1	YGL244W	ORM1	P53224	222 aa		11.49	□□□□□ -0.57
RTF1	YGL244W	NOP19	P53317	196 aa	Predicted RBP	11.49	□□□□□ -0.57
RTF1	YGL244W	SLM2	P53955	656 aa		11.49	□□□□□ -0.57
RTF1	YGL244W	SPO71	Q03868	1245 aa		11.49	□□□□□ -0.57
RTF1	YGL244W	HPT1	Q04178	221 aa	Known RBP	11.49	□□□□□ -0.57
RTF1	YGL244W	SLD7	Q08457	257 aa		11.49	□□□□□ -0.57
RTF1	YGL244W	COX4	P04037	155 aa		11.48	□□□□□ -0.57
RTF1	YGL244W	WHI2	P12611	486 aa		11.48	□□□□□ -0.57
RTF1	YGL244W	NMT1	P14743	455 aa		11.48	□□□□□ -0.57
RTF1	YGL244W	HSP26	P15992	214 aa	Known RBP RIP-Chip data	11.48	□□□□□ -0.57	not detected
RTF1	YGL244W	PMA2	P19657	947 aa		11.48	□□□□□ -0.57
RTF1	YGL244W	FAR1	P21268	830 aa		11.48	□□□□□ -0.57
RTF1	YGL244W	ATP12	P22135	325 aa		11.48	□□□□□ -0.57
RTF1	YGL244W	RVS161	P25343	265 aa	Known RBP	11.48	□□□□□ -0.57
RTF1	YGL244W	MET4	P32389	672 aa		11.48	□□□□□ -0.57
RTF1	YGL244W	AIM26	P32858	118 aa		11.48	□□□□□ -0.57
RTF1	YGL244W	SMY2	P32909	740 aa	Known RBP	11.48	□□□□□ -0.57
RTF1	YGL244W	NTR2	P36118	322 aa	Predicted RBP	11.48	□□□□□ -0.57
RTF1	YGL244W	MSS2	P40990	351 aa		11.48	□□□□□ -0.57
RTF1	YGL244W	STB2	P46679	850 aa		11.48	□□□□□ -0.57
RTF1	YGL244W	YGL176C	P46945	554 aa		11.48	□□□□□ -0.57
RTF1	YGL244W	PFD1	P46988	109 aa		11.48	□□□□□ -0.57
RTF1	YGL244W	RMR1	P53060	241 aa		11.48	□□□□□ -0.57
RTF1	YGL244W	YNL033W	P53964	284 aa		11.48	□□□□□ -0.57
RTF1	YGL244W	YNL019C	P53975	284 aa		11.48	□□□□□ -0.57
RTF1	YGL244W	ADE12	P80210	433 aa	Known RBP	11.48	□□□□□ -0.57
RTF1	YGL244W	BRR1	Q99177	341 aa	Predicted RBP	11.48	□□□□□ -0.57
RTF1	YGL244W	RHO1	P06780	209 aa	Known RBP	11.47	□□□□□ -0.57
RTF1	YGL244W	FBA1	P14540	359 aa	Known RBP	11.47	□□□□□ -0.57
RTF1	YGL244W	MRPL32	P25348	183 aa		11.47	□□□□□ -0.57
RTF1	YGL244W	LRE1	P25579	583 aa	Known RBP	11.47	□□□□□ -0.57
RTF1	YGL244W	POL4	P25615	582 aa		11.47	□□□□□ -0.57
RTF1	YGL244W	TBS1	P38114	1094 aa		11.47	□□□□□ -0.57
RTF1	YGL244W	YHB1	P39676	399 aa	Known RBP	11.47	□□□□□ -0.57
RTF1	YGL244W	PEX31	P53203	462 aa		11.47	□□□□□ -0.57
RTF1	YGL244W	LSM3	P57743	89 aa	Known RBP	11.47	□□□□□ -0.57
RTF1	YGL244W	CLU1	Q03690	1277 aa	Known RBP	11.47	□□□□□ -0.57
RTF1	YGL244W	SNU56	Q03782	492 aa	Known RBP	11.47	□□□□□ -0.57
RTF1	YGL244W	YLL054C	Q12244	843 aa		11.47	□□□□□ -0.57
RTF1	YGL244W	ATG34	Q12292	412 aa		11.47	□□□□□ -0.57
RTF1	YGL244W	CYS4	P32582	507 aa	Known RBP	11.46	□□□□□ -0.57
RTF1	YGL244W	SRP101	P32916	621 aa		11.46	□□□□□ -0.57
RTF1	YGL244W	CSE1	P33307	960 aa		11.46	□□□□□ -0.57
RTF1	YGL244W	SEO1	P39709	593 aa		11.46	□□□□□ -0.57
RTF1	YGL244W	SKY1	Q03656	742 aa		11.46	□□□□□ -0.57
RTF1	YGL244W	GPI17	Q04080	534 aa		11.46	□□□□□ -0.57
RTF1	YGL244W	NHX1	Q04121	633 aa		11.46	□□□□□ -0.57
RTF1	YGL244W	ARP9	Q05123	467 aa		11.46	□□□□□ -0.57
RTF1	YGL244W	YDL073W	Q07454	984 aa		11.46	□□□□□ -0.57
RTF1	YGL244W	YDR461C-A	Q2V2P7	80 aa		11.46	□□□□□ -0.57
RTF1	YGL244W	ERG20	P08524	352 aa	Known RBP	11.46	□□□□□ -0.58
RTF1	YGL244W	TEC1	P18412	486 aa		11.46	□□□□□ -0.58

Retrieved 100 of 5,963 RNA–protein pairs in 10.9 ms