RNA–Protein interactions for RNA: YPR056W

TFB4, Transcript of Subunit of TFIIH complex, yeast

Gene TFB4, Length 1,017 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFB4	YPR056W	RPB2	P08518	1224 aa	Known RBP	6.3	□□□□□ -1.4
TFB4	YPR056W	RPL19A	P0CX82	189 aa	Known RBP	6.3	□□□□□ -1.4
TFB4	YPR056W	RPL19B	P0CX83	189 aa	Predicted RBP	6.3	□□□□□ -1.4
TFB4	YPR056W	OCA4	P25366	362 aa		6.3	□□□□□ -1.4
TFB4	YPR056W	MSP1	P28737	362 aa		6.3	□□□□□ -1.4
TFB4	YPR056W	ARB1	P40024	610 aa	Known RBP	6.3	□□□□□ -1.4
TFB4	YPR056W	SSU1	P41930	458 aa		6.3	□□□□□ -1.4
TFB4	YPR056W	STU2	P46675	888 aa		6.3	□□□□□ -1.4
TFB4	YPR056W	MRX6	P48564	524 aa		6.3	□□□□□ -1.4
TFB4	YPR056W	DSD1	P53095	428 aa		6.3	□□□□□ -1.4
TFB4	YPR056W	RPN14	P53196	417 aa		6.3	□□□□□ -1.4
TFB4	YPR056W	CUL3	P53202	744 aa		6.3	□□□□□ -1.4
TFB4	YPR056W	LSB1	P53281	241 aa		6.3	□□□□□ -1.4
TFB4	YPR056W	PRO2	P54885	456 aa	Known RBP	6.3	□□□□□ -1.4
TFB4	YPR056W	MGR3	Q04472	501 aa		6.3	□□□□□ -1.4
TFB4	YPR056W	YLR456W	Q06199	204 aa		6.3	□□□□□ -1.4
TFB4	YPR056W	WHI4	Q07655	649 aa	Known RBP	6.3	□□□□□ -1.4
TFB4	YPR056W	NGL1	Q08213	363 aa	Known RBP	6.3	□□□□□ -1.4
TFB4	YPR056W	CIR2	Q08822	631 aa		6.3	□□□□□ -1.4
TFB4	YPR056W	RTC5	Q12108	567 aa	Known RBP	6.3	□□□□□ -1.4
TFB4	YPR056W	SEC39	Q12745	709 aa		6.3	□□□□□ -1.4
TFB4	YPR056W	MDH1	P17505	334 aa	Known RBP RIP-Chip data	6.29	□□□□□ -1.4	not detected
TFB4	YPR056W	KAR4	P25583	335 aa		6.29	□□□□□ -1.4
TFB4	YPR056W	RPL5	P26321	297 aa	Known RBP	6.29	□□□□□ -1.4
TFB4	YPR056W	HRR25	P29295	494 aa	Known RBP	6.29	□□□□□ -1.4
TFB4	YPR056W	STE14	P32584	239 aa		6.29	□□□□□ -1.4
TFB4	YPR056W	YEL043W	P32618	956 aa		6.29	□□□□□ -1.4
TFB4	YPR056W	DED81	P38707	554 aa	Known RBP	6.29	□□□□□ -1.4
TFB4	YPR056W	YJR061W	P40355	935 aa		6.29	□□□□□ -1.4
TFB4	YPR056W	EFM4	P40516	257 aa		6.29	□□□□□ -1.4
TFB4	YPR056W	VID28	P40547	921 aa		6.29	□□□□□ -1.4
TFB4	YPR056W	FET5	P43561	622 aa		6.29	□□□□□ -1.4
TFB4	YPR056W	IRC5	P43610	853 aa		6.29	□□□□□ -1.4
TFB4	YPR056W	HXT16	P47185	567 aa		6.29	□□□□□ -1.4
TFB4	YPR056W	KIN4	Q01919	800 aa		6.29	□□□□□ -1.4
TFB4	YPR056W	TOF2	Q02208	771 aa		6.29	□□□□□ -1.4
TFB4	YPR056W	GTB1	Q04924	702 aa		6.29	□□□□□ -1.4
TFB4	YPR056W	DON1	Q05610	365 aa		6.29	□□□□□ -1.4
TFB4	YPR056W	SMD2	Q06217	110 aa	Known RBP	6.29	□□□□□ -1.4
TFB4	YPR056W	MDM36	Q06820	579 aa		6.29	□□□□□ -1.4
TFB4	YPR056W	IWR1	Q07532	353 aa	Predicted RBP	6.29	□□□□□ -1.4
TFB4	YPR056W	YOL159C-A	Q3E769	90 aa		6.29	□□□□□ -1.4
TFB4	YPR056W	YBR126W-A	Q8TGU7	68 aa		6.29	□□□□□ -1.4
TFB4	YPR056W	YOR111W	Q99210	232 aa		6.29	□□□□□ -1.4
TFB4	YPR056W	SUI3	P09064	285 aa	Known RBP	6.28	□□□□□ -1.4
TFB4	YPR056W	FBP1	P09201	348 aa		6.28	□□□□□ -1.4
TFB4	YPR056W	PUT4	P15380	627 aa		6.28	□□□□□ -1.4
TFB4	YPR056W	DBP3	P20447	523 aa	Known RBP	6.28	□□□□□ -1.4
TFB4	YPR056W	RRP43	P25359	394 aa	Predicted RBP	6.28	□□□□□ -1.4
TFB4	YPR056W	PEP3	P27801	918 aa		6.28	□□□□□ -1.4
TFB4	YPR056W	HXT4	P32467	576 aa		6.28	□□□□□ -1.4
TFB4	YPR056W	YUH1	P35127	236 aa		6.28	□□□□□ -1.4
TFB4	YPR056W	TAF5	P38129	798 aa		6.28	□□□□□ -1.4
TFB4	YPR056W	YBL028C	P38202	106 aa		6.28	□□□□□ -1.4
TFB4	YPR056W	SRP68	P38687	599 aa	Known RBP	6.28	□□□□□ -1.4
TFB4	YPR056W	YHR097C	P38809	366 aa	Known RBP	6.28	□□□□□ -1.4
TFB4	YPR056W	BPL1	P48445	690 aa	Predicted RBP	6.28	□□□□□ -1.4
TFB4	YPR056W	PSP1	P50896	841 aa	Known RBP	6.28	□□□□□ -1.4
TFB4	YPR056W	TEL2	P53038	688 aa		6.28	□□□□□ -1.4
TFB4	YPR056W	YSA1	Q01976	231 aa		6.28	□□□□□ -1.4
TFB4	YPR056W	CTI6	Q08923	506 aa		6.28	□□□□□ -1.4
TFB4	YPR056W	LAS17	Q12446	633 aa		6.28	□□□□□ -1.4
TFB4	YPR056W	YRF1-4	O13559	1382 aa		6.28	□□□□□ -1.4
TFB4	YPR056W	SWI6	P09959	803 aa		6.27	□□□□□ -1.41
TFB4	YPR056W	YML002W	P0CF17	737 aa		6.27	□□□□□ -1.41
TFB4	YPR056W	GLN4	P13188	809 aa	Known RBP	6.27	□□□□□ -1.41
TFB4	YPR056W	PWP1	P21304	576 aa	Known RBP	6.27	□□□□□ -1.41
TFB4	YPR056W	SIR1	P21691	654 aa		6.27	□□□□□ -1.41
TFB4	YPR056W	PHO84	P25297	587 aa	Known RBP	6.27	□□□□□ -1.41
TFB4	YPR056W	MRP4	P32902	394 aa		6.27	□□□□□ -1.41
TFB4	YPR056W	CTF13	P35203	478 aa		6.27	□□□□□ -1.41
TFB4	YPR056W	YKR051W	P36142	418 aa		6.27	□□□□□ -1.41
TFB4	YPR056W	PSD1	P39006	500 aa		6.27	□□□□□ -1.41
TFB4	YPR056W	SIP4	P46954	829 aa		6.27	□□□□□ -1.41
TFB4	YPR056W	LSC1	P53598	329 aa	Known RBP	6.27	□□□□□ -1.41
TFB4	YPR056W	ARP5	P53946	755 aa		6.27	□□□□□ -1.41
TFB4	YPR056W	ECM22	Q05958	814 aa	Predicted RBP	6.27	□□□□□ -1.41
TFB4	YPR056W	NOP6	Q07623	225 aa	Known RBP	6.27	□□□□□ -1.41
TFB4	YPR056W	GRX6	Q12438	231 aa		6.27	□□□□□ -1.41
TFB4	YPR056W	CDC26	P14724	124 aa		6.26	□□□□□ -1.41
TFB4	YPR056W	ACO1	P19414	778 aa	Known RBP RIP-Chip data	6.26	□□□□□ -1.41	not detected
TFB4	YPR056W	PRE8	P23639	250 aa		6.26	□□□□□ -1.41
TFB4	YPR056W	SWI4	P25302	1093 aa	Known RBP	6.26	□□□□□ -1.41
TFB4	YPR056W	DMC1	P25453	334 aa		6.26	□□□□□ -1.41
TFB4	YPR056W	YKT6	P36015	200 aa	Known RBP	6.26	□□□□□ -1.41
TFB4	YPR056W	LYS9	P38999	446 aa		6.26	□□□□□ -1.41
TFB4	YPR056W	ALD5	P40047	520 aa	Known RBP	6.26	□□□□□ -1.41
TFB4	YPR056W	ARC1	P46672	376 aa	Known RBP	6.26	□□□□□ -1.41
TFB4	YPR056W	SHE4	P51534	789 aa		6.26	□□□□□ -1.41
TFB4	YPR056W	YBP2	P53169	641 aa		6.26	□□□□□ -1.41
TFB4	YPR056W	RPN7	Q06103	429 aa	Known RBP	6.26	□□□□□ -1.41
TFB4	YPR056W	PML1	Q07930	204 aa	Predicted RBP	6.26	□□□□□ -1.41
TFB4	YPR056W	SPE3	Q12074	293 aa	Known RBP	6.26	□□□□□ -1.41
TFB4	YPR056W	HER1	Q12276	1246 aa		6.26	□□□□□ -1.41
TFB4	YPR056W	GPM3	Q12326	303 aa		6.26	□□□□□ -1.41
TFB4	YPR056W	PET111	P08468	800 aa		6.25	□□□□□ -1.41
TFB4	YPR056W	CDC24	P11433	854 aa	Predicted RBP	6.25	□□□□□ -1.41
TFB4	YPR056W	CLB3	P24870	427 aa		6.25	□□□□□ -1.41
TFB4	YPR056W	CWH43	P25618	953 aa		6.25	□□□□□ -1.41
TFB4	YPR056W	SPC110	P32380	944 aa		6.25	□□□□□ -1.41

Retrieved 100 of 5,963 RNA–protein pairs in 52.4 ms