RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C MNN11P46985 422 aaKnown RBP1.9□□□□□ -2.11
VPS54YDR027C SCW10Q04951 389 aa1.9□□□□□ -2.11
VPS54YDR027C VMR1P38735 1592 aa1.89□□□□□ -2.11
VPS54YDR027C IML1P47170 1584 aa1.89□□□□□ -2.11
VPS54YDR027C RPS21AP0C0V8 87 aaKnown RBP1.89□□□□□ -2.11
VPS54YDR027C SSB1P11484 613 aaKnown RBP1.89□□□□□ -2.11
VPS54YDR027C CBP3P21560 335 aa1.89□□□□□ -2.11
VPS54YDR027C TOM71P38825 639 aaKnown RBP1.89□□□□□ -2.11
VPS54YDR027C SSB2P40150 613 aaKnown RBP1.89□□□□□ -2.11
VPS54YDR027C CIN1P40987 1014 aa1.89□□□□□ -2.11
VPS54YDR027C YJR008WP47085 338 aa1.89□□□□□ -2.11
VPS54YDR027C YGL260WP53056 76 aa1.89□□□□□ -2.11
VPS54YDR027C MDR1P53258 950 aa1.89□□□□□ -2.11
VPS54YDR027C YNL092WP53934 400 aa1.89□□□□□ -2.11
VPS54YDR027C VTC3Q02725 835 aa1.89□□□□□ -2.11
VPS54YDR027C MTQ2Q03920 221 aaPredicted RBP1.89□□□□□ -2.11
VPS54YDR027C UTP14Q04500 899 aaKnown RBP1.89□□□□□ -2.11
VPS54YDR027C NUP157P40064 1391 aaKnown RBP1.89□□□□□ -2.11
VPS54YDR027C SSN2P38931 1420 aa1.89□□□□□ -2.11
VPS54YDR027C YPT1P01123 206 aaKnown RBP1.89□□□□□ -2.11
VPS54YDR027C YCR043CP25361 127 aa1.89□□□□□ -2.11
VPS54YDR027C SDH8P38345 138 aa1.89□□□□□ -2.11
VPS54YDR027C PEF1P53238 335 aa1.89□□□□□ -2.11
VPS54YDR027C YNR029CP53729 429 aaKnown RBP1.89□□□□□ -2.11
VPS54YDR027C YTH1Q06102 208 aaPredicted RBP1.89□□□□□ -2.11
VPS54YDR027C THI73Q07904 523 aa1.89□□□□□ -2.11
VPS54YDR027C EDE1P34216 1381 aa1.89□□□□□ -2.11
VPS54YDR027C GCN2P15442 1659 aa1.89□□□□□ -2.11
VPS54YDR027C PHO2P07269 559 aa1.88□□□□□ -2.11
VPS54YDR027C MAK32P23060 363 aa1.88□□□□□ -2.11
VPS54YDR027C HXT4P32467 576 aa1.88□□□□□ -2.11
VPS54YDR027C RAD26P40352 1085 aa1.88□□□□□ -2.11
VPS54YDR027C YIL152WP40455 235 aa1.88□□□□□ -2.11
VPS54YDR027C RNR4P49723 345 aaKnown RBP1.88□□□□□ -2.11
VPS54YDR027C NRT1Q08485 598 aa1.88□□□□□ -2.11
VPS54YDR027C PDR11P40550 1411 aa1.88□□□□□ -2.11
VPS54YDR027C POM152P39685 1337 aa1.88□□□□□ -2.11
VPS54YDR027C TOM20P35180 183 aa1.88□□□□□ -2.11
VPS54YDR027C RTT107P38850 1070 aa1.88□□□□□ -2.11
VPS54YDR027C MAM1P40065 302 aa1.88□□□□□ -2.11
VPS54YDR027C YGL081WP53156 320 aa1.88□□□□□ -2.11
VPS54YDR027C NUP145P49687 1317 aa1.88□□□□□ -2.11
VPS54YDR027C RTC1Q08281 1341 aa1.88□□□□□ -2.11
VPS54YDR027C GAL4P04386 881 aa1.87□□□□□ -2.11
VPS54YDR027C PLC1P32383 869 aa1.87□□□□□ -2.11
VPS54YDR027C ARC40P38328 384 aaKnown RBP1.87□□□□□ -2.11
VPS54YDR027C PEA2P40091 420 aa1.87□□□□□ -2.11
VPS54YDR027C TES1P41903 349 aaKnown RBP1.87□□□□□ -2.11
VPS54YDR027C YMR034CQ05131 434 aaPredicted RBP1.87□□□□□ -2.11
VPS54YDR027C NGL1Q08213 363 aaKnown RBP1.87□□□□□ -2.11
VPS54YDR027C GET3Q12154 354 aaKnown RBP1.87□□□□□ -2.11
VPS54YDR027C PDR5P33302 1511 aaKnown RBP1.87□□□□□ -2.11
VPS54YDR027C NUP188P52593 1655 aaKnown RBP1.87□□□□□ -2.11
VPS54YDR027C CHO2P05374 869 aaKnown RBP1.87□□□□□ -2.11
VPS54YDR027C RRP43P25359 394 aaPredicted RBP1.87□□□□□ -2.11
VPS54YDR027C MLH2Q07980 695 aa1.87□□□□□ -2.11
VPS54YDR027C PFA4Q12006 378 aa1.87□□□□□ -2.11
VPS54YDR027C SMC4Q12267 1418 aa1.87□□□□□ -2.11
VPS54YDR027C VPS13Q07878 3144 aa1.87□□□□□ -2.11
VPS54YDR027C KES1P35844 434 aaKnown RBP1.86□□□□□ -2.11
VPS54YDR027C LNP1P38878 278 aa1.86□□□□□ -2.11
VPS54YDR027C MET30P39014 640 aa1.86□□□□□ -2.11
VPS54YDR027C SAP1P39955 897 aaKnown RBP1.86□□□□□ -2.11
VPS54YDR027C YIL169CP40442 995 aa1.86□□□□□ -2.11
VPS54YDR027C NOP2P40991 618 aaKnown RBP1.86□□□□□ -2.11
VPS54YDR027C GPG1P53130 126 aa1.86□□□□□ -2.11
VPS54YDR027C UBP16Q02863 499 aa1.86□□□□□ -2.11
VPS54YDR027C YML119WQ03208 357 aa1.86□□□□□ -2.11
VPS54YDR027C PLM2Q04383 521 aa1.86□□□□□ -2.11
VPS54YDR027C ECM22Q05958 814 aaPredicted RBP1.86□□□□□ -2.11
VPS54YDR027C IMH1Q06704 911 aaKnown RBP1.86□□□□□ -2.11
VPS54YDR027C LYS21Q12122 440 aaKnown RBP1.86□□□□□ -2.11
VPS54YDR027C NOP56Q12460 504 aaKnown RBP RIP-Chip data1.86□□□□□ -2.11not detected
VPS54YDR027C VPS5Q92331 675 aa1.86□□□□□ -2.11
VPS54YDR027C SEC18P18759 758 aaKnown RBP1.86□□□□□ -2.11
VPS54YDR027C CWH43P25618 953 aa1.86□□□□□ -2.11
VPS54YDR027C VRG4P40107 337 aa1.86□□□□□ -2.11
VPS54YDR027C SAD1P43589 448 aa1.86□□□□□ -2.11
VPS54YDR027C YJR120WP47157 116 aa1.86□□□□□ -2.11
VPS54YDR027C YPT11P48559 417 aa1.86□□□□□ -2.11
VPS54YDR027C YGR237CP50089 785 aa1.86□□□□□ -2.11
VPS54YDR027C YNL144CP53907 740 aa1.86□□□□□ -2.11
VPS54YDR027C YVH1Q02256 364 aaKnown RBP1.86□□□□□ -2.11
VPS54YDR027C UME1Q03010 460 aa1.86□□□□□ -2.11
VPS54YDR027C TMA17Q12513 150 aa1.86□□□□□ -2.11
VPS54YDR027C SRP68P38687 599 aaKnown RBP1.85□□□□□ -2.11
VPS54YDR027C PMT3P47190 753 aa1.85□□□□□ -2.11
VPS54YDR027C YML053CQ04978 212 aa1.85□□□□□ -2.11
VPS54YDR027C RRI1Q12468 440 aa1.85□□□□□ -2.11
VPS54YDR027C POL1P13382 1468 aa1.85□□□□□ -2.11
VPS54YDR027C SNQ2P32568 1501 aaKnown RBP1.85□□□□□ -2.11
VPS54YDR027C AMD2P22580 549 aa1.85□□□□□ -2.11
VPS54YDR027C RTS3P53289 263 aa1.85□□□□□ -2.11
VPS54YDR027C FOL1P53848 824 aa1.85□□□□□ -2.11
VPS54YDR027C RAD34Q06665 692 aa1.85□□□□□ -2.11
VPS54YDR027C YOL057WQ08225 711 aa1.85□□□□□ -2.11
VPS54YDR027C LCB4Q12246 624 aa1.85□□□□□ -2.11
VPS54YDR027C CNA1P23287 553 aa1.84□□□□□ -2.11
VPS54YDR027C ORC5P50874 479 aa1.84□□□□□ -2.11
VPS54YDR027C ENT1Q12518 454 aa1.84□□□□□ -2.11
Retrieved 100 of 5,963 RNA–protein pairs in 26 ms