RNA–Protein interactions for RNA: ENSMUST00000098548.7

Scn1b-201, Transcript of Sodium channel subunit beta-1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Scn1b, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1b-201ENSMUST00000098548 1600014C23RikQ9DAX4 101 aa14,24□□□□□ -0,13
Scn1b-201ENSMUST00000098548 ApobE9Q414 4505 aa14,24□□□□□ -0,13
Scn1b-201ENSMUST00000098548 Ube2bP63147 152 aa14,23□□□□□ -0,13
Scn1b-201ENSMUST00000098548 A830005F24RikQ8BRT5 167 aa14,22□□□□□ -0,13
Scn1b-201ENSMUST00000098548 Defa27F2Z403 93 aa14,22□□□□□ -0,13
Scn1b-201ENSMUST00000098548 Gm17521F6QAC8 156 aa14,21□□□□□ -0,14
Scn1b-201ENSMUST00000098548 Gm12353A2AGJ4 60 aa14,18□□□□□ -0,14
Scn1b-201ENSMUST00000098548 Defb37Q7TMD2 62 aa14,18□□□□□ -0,14
Scn1b-201ENSMUST00000098548 Gm37389A0A0A6YW05 95 aa14,17□□□□□ -0,14
Scn1b-201ENSMUST00000098548 Krtap29-1A2A5X4 342 aa14,17□□□□□ -0,14
Scn1b-201ENSMUST00000098548 AI606181Q8C7B9 129 aa14,17□□□□□ -0,14
Scn1b-201ENSMUST00000098548 Ubl5Q9EPV8 73 aa14,17□□□□□ -0,14
Scn1b-201ENSMUST00000098548 A0A286YE02 88 aa14,16□□□□□ -0,14
Scn1b-201ENSMUST00000098548 Vpreb3D3Z6J4 130 aa14,14□□□□□ -0,15
Scn1b-201ENSMUST00000098548 Sprr2jO70561 109 aa14,14□□□□□ -0,15
Scn1b-201ENSMUST00000098548 Gm10401E9Q3K6 71 aa14,13□□□□□ -0,15
Scn1b-201ENSMUST00000098548 Phf5aP83870 110 aaKnown RBP14,13□□□□□ -0,15
Scn1b-201ENSMUST00000098548 Gm10308Q9CVR5 141 aa14,13□□□□□ -0,15
Scn1b-201ENSMUST00000098548 Vpreb2P13373 142 aa14,13□□□□□ -0,15
Scn1b-201ENSMUST00000098548 Anapc13Q8R034 74 aa14,12□□□□□ -0,15
Scn1b-201ENSMUST00000098548 Tmem254aP0DN89 123 aa14,1□□□□□ -0,15
Scn1b-201ENSMUST00000098548 Tmem254bP0DN90 123 aa14,1□□□□□ -0,15
Scn1b-201ENSMUST00000098548 Tmem254cP0DN91 123 aa14,1□□□□□ -0,15
Scn1b-201ENSMUST00000098548 Cox6a2P43023 97 aa14,1□□□□□ -0,15
Scn1b-201ENSMUST00000098548 Defb9Q8R2I6 67 aa14,1□□□□□ -0,15
Scn1b-201ENSMUST00000098548 Vpreb1P13372 142 aa14,08□□□□□ -0,16
Scn1b-201ENSMUST00000098548 Ube2aQ9Z255 152 aa14,07□□□□□ -0,16
Scn1b-201ENSMUST00000098548 P06320 134 aa14,06□□□□□ -0,16
Scn1b-201ENSMUST00000098548 Igkv8-28A0A0G2JE47 121 aa14,05□□□□□ -0,16
Scn1b-201ENSMUST00000098548 Gm10139O88245 57 aa14,05□□□□□ -0,16
Scn1b-201ENSMUST00000098548 A730071L15RikQ8C4X0 137 aa14,05□□□□□ -0,16
Scn1b-201ENSMUST00000098548 Gpr15lA0A0B4J1N3 78 aa14,04□□□□□ -0,16
Scn1b-201ENSMUST00000098548 Gm27235Q3UW50 83 aa14,03□□□□□ -0,16
Scn1b-201ENSMUST00000098548 Fam19a3Q7TPG6 132 aa14,03□□□□□ -0,16
Scn1b-201ENSMUST00000098548 Igkv8-21A0A140T8P7 120 aa14,01□□□□□ -0,17
Scn1b-201ENSMUST00000098548 Defa28D3Z1V9 94 aa14,01□□□□□ -0,17
Scn1b-201ENSMUST00000098548 ScxQ64124 207 aa14□□□□□ -0,17
Scn1b-201ENSMUST00000098548 Chchd10Q7TNL9 138 aa13,99□□□□□ -0,17
Scn1b-201ENSMUST00000098548 Kmt2cQ8BRH4 4903 aa13,98□□□□□ -0,17
Scn1b-201ENSMUST00000098548 6030445D17RikE9Q8F9 148 aa13,98□□□□□ -0,17
Scn1b-201ENSMUST00000098548 Defa7P50705 93 aa13,96□□□□□ -0,17
Scn1b-201ENSMUST00000098548 NbdyA0A0N4SUI7 68 aa13,96□□□□□ -0,18
Scn1b-201ENSMUST00000098548 Ccdc179J3QM76 67 aa13,94□□□□□ -0,18
Scn1b-201ENSMUST00000098548 Dnah8Q91XQ0 4731 aa13,93□□□□□ -0,18
Scn1b-201ENSMUST00000098548 Igkv3-5A0A140T8M6 119 aa13,92□□□□□ -0,18
Scn1b-201ENSMUST00000098548 Igkv3-7A0A0G2JE31 119 aa13,92□□□□□ -0,18
Scn1b-201ENSMUST00000098548 Tnp2P11378 117 aa13,92□□□□□ -0,18
Scn1b-201ENSMUST00000098548 Adm2Q7TNK8 150 aa13,92□□□□□ -0,18
Scn1b-201ENSMUST00000098548 A330070K13RikQ8CA53 115 aa13,91□□□□□ -0,18
Scn1b-201ENSMUST00000098548 Znf706Q9D115 76 aaKnown RBP13,91□□□□□ -0,18
Scn1b-201ENSMUST00000098548 Vps13bQ80TY5 3993 aa13,91□□□□□ -0,18
Scn1b-201ENSMUST00000098548 MplkipQ9D011 178 aa13,9□□□□□ -0,18
Scn1b-201ENSMUST00000098548 Igkv1-110A0A0B4J1I0 119 aa13,89□□□□□ -0,19
Scn1b-201ENSMUST00000098548 Igf1P05017 153 aa13,88□□□□□ -0,19
Scn1b-201ENSMUST00000098548 Pkhd1l1Q80ZA4 4249 aa13,88□□□□□ -0,19
Scn1b-201ENSMUST00000098548 4930535I16RikQ9CUI2 172 aa13,87□□□□□ -0,19
Scn1b-201ENSMUST00000098548 Hist1h4aP62806 103 aaKnown RBP13,86□□□□□ -0,19
Scn1b-201ENSMUST00000098548 Igkv3-4A0A140T8Q4 119 aa13,85□□□□□ -0,19
Scn1b-201ENSMUST00000098548 Krtap14O08640 167 aa13,85□□□□□ -0,19
Scn1b-201ENSMUST00000098548 Gm20604F8WIA3 75 aa13,84□□□□□ -0,19
Scn1b-201ENSMUST00000098548 Gm10642Q3TWM1 71 aa13,84□□□□□ -0,19
Scn1b-201ENSMUST00000098548 Wfdc13Q5DQQ6 81 aa13,84□□□□□ -0,19
Scn1b-201ENSMUST00000098548 Hectd4E9Q2E4 4418 aa13,84□□□□□ -0,19
Scn1b-201ENSMUST00000098548 Gm37013Q8K491 104 aa13,82□□□□□ -0,2
Scn1b-201ENSMUST00000098548 D130052B06RikQ3UW13 202 aa13,8□□□□□ -0,2
Scn1b-201ENSMUST00000098548 Lrp1bQ9JI18 4599 aa13,8□□□□□ -0,2
Scn1b-201ENSMUST00000098548 Ndufc1Q9CQY9 76 aa13,79□□□□□ -0,2
Scn1b-201ENSMUST00000098548 Odf3bQ5M8M2 238 aa13,79□□□□□ -0,2
Scn1b-201ENSMUST00000098548 Q8BT88 171 aa13,79□□□□□ -0,2
Scn1b-201ENSMUST00000098548 1700018G05RikA0A1B0GSI2 66 aa13,78□□□□□ -0,2
Scn1b-201ENSMUST00000098548 Gm10570F6VB42 170 aa13,78□□□□□ -0,2
Scn1b-201ENSMUST00000098548 Rpl37aP61514 92 aa13,78□□□□□ -0,2
Scn1b-201ENSMUST00000098548 Mrpl34Q99N91 92 aa13,78□□□□□ -0,2
Scn1b-201ENSMUST00000098548 UqcrqQ9CQ69 82 aa13,76□□□□□ -0,21
Scn1b-201ENSMUST00000098548 Gm28230A0A0A0MQ91 144 aa13,75□□□□□ -0,21
Scn1b-201ENSMUST00000098548 Igkv3-10A0A0G2JGN0 119 aa13,75□□□□□ -0,21
Scn1b-201ENSMUST00000098548 Gm20726G3UX18 150 aa13,74□□□□□ -0,21
Scn1b-201ENSMUST00000098548 Defb39Q70KL3 74 aa13,74□□□□□ -0,21
Scn1b-201ENSMUST00000098548 RetnlbQ99P86 105 aa13,73□□□□□ -0,21
Scn1b-201ENSMUST00000098548 Herc2Q4U2R1 4836 aa13,72□□□□□ -0,21
Scn1b-201ENSMUST00000098548 Birc6O88738 4882 aa13,72□□□□□ -0,21
Scn1b-201ENSMUST00000098548 Gm44790A0A0N4SV91 103 aa13,71□□□□□ -0,22
Scn1b-201ENSMUST00000098548 Gm17689B3GLJ4 109 aa13,71□□□□□ -0,22
Scn1b-201ENSMUST00000098548 C130032M10RikQ8C888 123 aa13,71□□□□□ -0,22
Scn1b-201ENSMUST00000098548 Fat2Q5F226 4351 aa13,7□□□□□ -0,22
Scn1b-201ENSMUST00000098548 Cypt14J3QPF7 87 aa13,66□□□□□ -0,22
Scn1b-201ENSMUST00000098548 HrnrQ8VHD8 2496 aa13,63□□□□□ -0,23
Scn1b-201ENSMUST00000098548 Gm21886J3QJU9 214 aa13,62□□□□□ -0,23
Scn1b-201ENSMUST00000098548 Krtap19-5O08632 62 aa13,62□□□□□ -0,23
Scn1b-201ENSMUST00000098548 Defa25Q5G864 92 aa13,59□□□□□ -0,23
Scn1b-201ENSMUST00000098548 Serp2Q6TAW2 65 aa13,59□□□□□ -0,23
Scn1b-201ENSMUST00000098548 Bean1Q9EQG5 255 aa13,59□□□□□ -0,23
Scn1b-201ENSMUST00000098548 Abca13Q5SSE9 5034 aa13,58□□□□□ -0,24
Scn1b-201ENSMUST00000098548 Fat3Q8BNA6 4555 aa13,57□□□□□ -0,24
Scn1b-201ENSMUST00000098548 Igkv8-19A0A0G2JFN8 121 aa13,54□□□□□ -0,24
Scn1b-201ENSMUST00000098548 Kiaa1109A2AAE1 5005 aa13,54□□□□□ -0,24
Scn1b-201ENSMUST00000098548 7530416G11RikJ3QJX6 159 aa13,54□□□□□ -0,24
Scn1b-201ENSMUST00000098548 GhrhP16043 103 aa13,53□□□□□ -0,24
Scn1b-201ENSMUST00000098548 Cystm1Q8K353 104 aa13,53□□□□□ -0,24
Scn1b-201ENSMUST00000098548 4930518I15RikQ3V2W7 57 aa13,51□□□□□ -0,25
Retrieved 100 of 22,080 RNA–protein pairs in 10,9 ms