Protein–RNA interactions for Protein: Q8K353

Cystm1, Cysteine-rich and transmembrane domain-containing protein 1, mousemouse

Predictions only

Length 104 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cystm1Q8K353 Gm25239-201ENSMUST00000174915 86 ntBASIC21,49■■□□□ 1,03
Cystm1Q8K353 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC21,25■□□□□ 0,99
Cystm1Q8K353 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC21,03■□□□□ 0,96
Cystm1Q8K353 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC20,81■□□□□ 0,92
Cystm1Q8K353 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC20,12■□□□□ 0,81
Cystm1Q8K353 Psd-208ENSMUST00000224556 2034 ntBASIC20,11■□□□□ 0,81
Cystm1Q8K353 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC19,83■□□□□ 0,77
Cystm1Q8K353 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC19,79■□□□□ 0,76
Cystm1Q8K353 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC19,66■□□□□ 0,74
Cystm1Q8K353 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC19,31■□□□□ 0,68
Cystm1Q8K353 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC19,28■□□□□ 0,68
Cystm1Q8K353 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC19,28■□□□□ 0,68
Cystm1Q8K353 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC19,25■□□□□ 0,67
Cystm1Q8K353 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC19,12■□□□□ 0,65
Cystm1Q8K353 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC19,11■□□□□ 0,65
Cystm1Q8K353 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC19,07■□□□□ 0,64
Cystm1Q8K353 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC18,96■□□□□ 0,63
Cystm1Q8K353 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC18,91■□□□□ 0,62
Cystm1Q8K353 Gm15042-201ENSMUST00000120212 883 ntBASIC18,83■□□□□ 0,6
Cystm1Q8K353 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC18,81■□□□□ 0,6
Cystm1Q8K353 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC18,81■□□□□ 0,6
Cystm1Q8K353 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC18,75■□□□□ 0,59
Cystm1Q8K353 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC18,73■□□□□ 0,59
Cystm1Q8K353 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC18,67■□□□□ 0,58
Cystm1Q8K353 Gm42596-201ENSMUST00000196305 1958 ntBASIC18,63■□□□□ 0,57
Cystm1Q8K353 Gm24109-201ENSMUST00000175489 103 ntBASIC18,59■□□□□ 0,57
Cystm1Q8K353 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC18,55■□□□□ 0,56
Cystm1Q8K353 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC18,54■□□□□ 0,56
Cystm1Q8K353 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC18,5■□□□□ 0,55
Cystm1Q8K353 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC18,43■□□□□ 0,54
Cystm1Q8K353 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC18,41■□□□□ 0,54
Cystm1Q8K353 Gm15045-201ENSMUST00000117359 883 ntBASIC18,37■□□□□ 0,53
Cystm1Q8K353 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC18,34■□□□□ 0,53
Cystm1Q8K353 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC18,29■□□□□ 0,52
Cystm1Q8K353 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC18,23■□□□□ 0,51
Cystm1Q8K353 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC18,18■□□□□ 0,5
Cystm1Q8K353 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC18,17■□□□□ 0,5
Cystm1Q8K353 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC18,09■□□□□ 0,49
Cystm1Q8K353 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC18,04■□□□□ 0,48
Cystm1Q8K353 Gm23366-201ENSMUST00000175022 89 ntBASIC18,03■□□□□ 0,48
Cystm1Q8K353 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0,47
Cystm1Q8K353 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC17,97■□□□□ 0,47
Cystm1Q8K353 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC17,92■□□□□ 0,46
Cystm1Q8K353 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC17,91■□□□□ 0,46
Cystm1Q8K353 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC17,9■□□□□ 0,46
Cystm1Q8K353 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC17,89■□□□□ 0,45
Cystm1Q8K353 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC17,88■□□□□ 0,45
Cystm1Q8K353 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC17,88■□□□□ 0,45
Cystm1Q8K353 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC17,86■□□□□ 0,45
Cystm1Q8K353 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC17,84■□□□□ 0,45
Cystm1Q8K353 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC17,83■□□□□ 0,44
Cystm1Q8K353 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC17,82■□□□□ 0,44
Cystm1Q8K353 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC17,79■□□□□ 0,44
Cystm1Q8K353 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC17,79■□□□□ 0,44
Cystm1Q8K353 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC17,76■□□□□ 0,43
Cystm1Q8K353 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC17,75■□□□□ 0,43
Cystm1Q8K353 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC17,73■□□□□ 0,43
Cystm1Q8K353 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC17,72■□□□□ 0,43
Cystm1Q8K353 Zxda-201ENSMUST00000117281 2621 ntBASIC17,7■□□□□ 0,42
Cystm1Q8K353 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC17,59■□□□□ 0,41
Cystm1Q8K353 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC17,55■□□□□ 0,4
Cystm1Q8K353 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC17,53■□□□□ 0,4
Cystm1Q8K353 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC17,53■□□□□ 0,4
Cystm1Q8K353 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC17,52■□□□□ 0,39
Cystm1Q8K353 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC17,47■□□□□ 0,39
Cystm1Q8K353 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC17,47■□□□□ 0,39
Cystm1Q8K353 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC17,46■□□□□ 0,39
Cystm1Q8K353 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC17,45■□□□□ 0,38
Cystm1Q8K353 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC17,42■□□□□ 0,38
Cystm1Q8K353 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC17,41■□□□□ 0,38
Cystm1Q8K353 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC17,39■□□□□ 0,37
Cystm1Q8K353 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC17,39■□□□□ 0,37
Cystm1Q8K353 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC17,37■□□□□ 0,37
Cystm1Q8K353 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC17,36■□□□□ 0,37
Cystm1Q8K353 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC17,36■□□□□ 0,37
Cystm1Q8K353 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC17,35■□□□□ 0,37
Cystm1Q8K353 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC17,35■□□□□ 0,37
Cystm1Q8K353 Gm10524-201ENSMUST00000181931 1893 ntBASIC17,32■□□□□ 0,36
Cystm1Q8K353 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC17,3■□□□□ 0,36
Cystm1Q8K353 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC17,3■□□□□ 0,36
Cystm1Q8K353 AC153911.1-202ENSMUST00000218534 1034 ntBASIC17,29■□□□□ 0,36
Cystm1Q8K353 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC17,29■□□□□ 0,36
Cystm1Q8K353 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC17,29■□□□□ 0,36
Cystm1Q8K353 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC17,27■□□□□ 0,36
Cystm1Q8K353 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC17,26■□□□□ 0,35
Cystm1Q8K353 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC17,23■□□□□ 0,35
Cystm1Q8K353 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC17,22■□□□□ 0,35
Cystm1Q8K353 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC17,21■□□□□ 0,35
Cystm1Q8K353 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC17,21■□□□□ 0,34
Cystm1Q8K353 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC17,2■□□□□ 0,34
Cystm1Q8K353 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC17,2■□□□□ 0,34
Cystm1Q8K353 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC17,17■□□□□ 0,34
Cystm1Q8K353 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC17,16■□□□□ 0,34
Cystm1Q8K353 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC17,15■□□□□ 0,34
Cystm1Q8K353 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC17,14■□□□□ 0,33
Cystm1Q8K353 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC17,14■□□□□ 0,33
Cystm1Q8K353 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC17,13■□□□□ 0,33
Cystm1Q8K353 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC17,12■□□□□ 0,33
Cystm1Q8K353 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC17,12■□□□□ 0,33
Cystm1Q8K353 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC17,1■□□□□ 0,33
Retrieved 100 of 76,532 protein–RNA pairs in 11,1 ms