RNA–Protein interactions for RNA: ENSMUST00000056508.11

Clcn3-202, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS P4 TSL 1 (best) BASIC

Gene Clcn3, Length 5,684 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-202ENSMUST00000056508 F8Q06194 2319 aa5.25□□□□□ -1.57
Clcn3-202ENSMUST00000056508 Prrc2aQ7TSC1 2158 aaKnown RBP5.24□□□□□ -1.57
Clcn3-202ENSMUST00000056508 Cacna1aP97445 2368 aa5.24□□□□□ -1.57
Clcn3-202ENSMUST00000056508 Akap6E9Q9K8 2307 aa5.24□□□□□ -1.57
Clcn3-202ENSMUST00000056508 DmdP11531 3678 aa5.24□□□□□ -1.57
Clcn3-202ENSMUST00000056508 Dopey2Q3UHQ6 2295 aa5.24□□□□□ -1.57
Clcn3-202ENSMUST00000056508 Dnah12Q3V0Q1 3086 aa5.24□□□□□ -1.57
Clcn3-202ENSMUST00000056508 A730071L15RikQ8C4X0 137 aa5.23□□□□□ -1.57
Clcn3-202ENSMUST00000056508 Cacna1bO55017 2327 aa5.23□□□□□ -1.57
Clcn3-202ENSMUST00000056508 B930094E09RikQ8C4T2 136 aa5.22□□□□□ -1.57
Clcn3-202ENSMUST00000056508 Rpl37Q9D823 97 aa5.22□□□□□ -1.57
Clcn3-202ENSMUST00000056508 Asxl3Q8C4A5 2259 aa5.22□□□□□ -1.57
Clcn3-202ENSMUST00000056508 VcanQ62059 3357 aa5.22□□□□□ -1.57
Clcn3-202ENSMUST00000056508 Ncor2Q9WU42 2472 aaKnown RBP5.22□□□□□ -1.57
Clcn3-202ENSMUST00000056508 Dopey1Q8BL99 2399 aa5.21□□□□□ -1.58
Clcn3-202ENSMUST00000056508 Gm10772F7AIG4 85 aa5.2□□□□□ -1.58
Clcn3-202ENSMUST00000056508 Sptbn1Q62261 2363 aaKnown RBP5.2□□□□□ -1.58
Clcn3-202ENSMUST00000056508 Frem1Q684R7 2191 aa5.2□□□□□ -1.58
Clcn3-202ENSMUST00000056508 AtrxQ61687 2476 aaKnown RBP5.2□□□□□ -1.58
Clcn3-202ENSMUST00000056508 Usf3B2RUQ2 2221 aa5.19□□□□□ -1.58
Clcn3-202ENSMUST00000056508 Pkd1l3Q2EG98 2201 aa5.19□□□□□ -1.58
Clcn3-202ENSMUST00000056508 Cacna1hO88427 2365 aa5.19□□□□□ -1.58
Clcn3-202ENSMUST00000056508 Wdr90Q6ZPG2 1874 aa5.18□□□□□ -1.58
Clcn3-202ENSMUST00000056508 SpegQ62407 3262 aa5.18□□□□□ -1.58
Clcn3-202ENSMUST00000056508 Gm7173A0A0G2JEB6 3132 aa5.18□□□□□ -1.58
Clcn3-202ENSMUST00000056508 Pcsk5Q04592 1877 aa5.18□□□□□ -1.58
Clcn3-202ENSMUST00000056508 Ahctf1Q8CJF7 2243 aaKnown RBP5.18□□□□□ -1.58
Clcn3-202ENSMUST00000056508 Alms1Q8K4E0 3251 aa5.17□□□□□ -1.58
Clcn3-202ENSMUST00000056508 Col6a6Q8C6K9 2265 aa5.17□□□□□ -1.58
Clcn3-202ENSMUST00000056508 Gpr179E9PY61 2293 aa5.17□□□□□ -1.58
Clcn3-202ENSMUST00000056508 Ros1Q78DX7 2340 aa5.17□□□□□ -1.58
Clcn3-202ENSMUST00000056508 Mki67E9PVX6 3177 aaKnown RBP5.17□□□□□ -1.58
Clcn3-202ENSMUST00000056508 F5O88783 2183 aa5.16□□□□□ -1.58
Clcn3-202ENSMUST00000056508 Col5a1O88207 1838 aa5.16□□□□□ -1.58
Clcn3-202ENSMUST00000056508 E130208F15RikQ3UPV3 143 aa5.15□□□□□ -1.58
Clcn3-202ENSMUST00000056508 Dchs2A0A0A6YW72 3346 aa5.15□□□□□ -1.59
Clcn3-202ENSMUST00000056508 Malrd1A2AJX4 2123 aa5.14□□□□□ -1.59
Clcn3-202ENSMUST00000056508 Gm5767A0A0J9YTU8 78 aa5.14□□□□□ -1.59
Clcn3-202ENSMUST00000056508 Col4a6B1AVK5 1691 aa5.14□□□□□ -1.59
Clcn3-202ENSMUST00000056508 Gm2310J3QNJ2 377 aa5.13□□□□□ -1.59
Clcn3-202ENSMUST00000056508 Sptbn2Q68FG2 2388 aa5.13□□□□□ -1.59
Clcn3-202ENSMUST00000056508 Gpr15lA0A0B4J1N3 78 aa5.13□□□□□ -1.59
Clcn3-202ENSMUST00000056508 Cep250Q60952 2414 aa5.12□□□□□ -1.59
Clcn3-202ENSMUST00000056508 Myo15aQ9QZZ4 3511 aa5.12□□□□□ -1.59
Clcn3-202ENSMUST00000056508 Ptprz1B9EKR1 2312 aa5.11□□□□□ -1.59
Clcn3-202ENSMUST00000056508 Spaca4Q80ZQ0 127 aa5.1□□□□□ -1.59
Clcn3-202ENSMUST00000056508 CenpfE9Q3P4 2997 aaKnown RBP5.1□□□□□ -1.59
Clcn3-202ENSMUST00000056508 AspmQ8CJ27 3122 aa5.09□□□□□ -1.6
Clcn3-202ENSMUST00000056508 Col4a5Q63ZW6 1691 aa5.07□□□□□ -1.6
Clcn3-202ENSMUST00000056508 Gm17416Q30KP4 66 aa5.07□□□□□ -1.6
Clcn3-202ENSMUST00000056508 Abca4O35600 2310 aa5.07□□□□□ -1.6
Clcn3-202ENSMUST00000056508 Cep290Q6A078 2472 aa5.07□□□□□ -1.6
Clcn3-202ENSMUST00000056508 AcanQ61282 2132 aaKnown RBP5.06□□□□□ -1.6
Clcn3-202ENSMUST00000056508 Muc5acE9QAQ8 3455 aa5.06□□□□□ -1.6
Clcn3-202ENSMUST00000056508 Sprr1bQ62267 153 aa5.05□□□□□ -1.6
Clcn3-202ENSMUST00000056508 CadB2RQC6 2225 aa5.05□□□□□ -1.6
Clcn3-202ENSMUST00000056508 Cfap46E9Q2C0 2641 aa5.04□□□□□ -1.6
Clcn3-202ENSMUST00000056508 Cfap54Q8C6S9 3106 aa5.04□□□□□ -1.6
Clcn3-202ENSMUST00000056508 Dmxl1Q6PNC0 3013 aa5.04□□□□□ -1.6
Clcn3-202ENSMUST00000056508 Zcchc13Q9D548 170 aa5.03□□□□□ -1.6
Clcn3-202ENSMUST00000056508 Rif1Q6PR54 2419 aaKnown RBP5.02□□□□□ -1.61
Clcn3-202ENSMUST00000056508 Sprr4Q8CGN8 76 aa5.01□□□□□ -1.61
Clcn3-202ENSMUST00000056508 Zdbf2Q5SS00 2493 aaKnown RBP5.01□□□□□ -1.61
Clcn3-202ENSMUST00000056508 CrebbpP45481 2441 aa5□□□□□ -1.61
Clcn3-202ENSMUST00000056508 Anapc11Q9CPX9 84 aa5□□□□□ -1.61
Clcn3-202ENSMUST00000056508 SpenQ62504 3644 aaKnown RBP4.99□□□□□ -1.61
Clcn3-202ENSMUST00000056508 Frem2Q6NVD0 3160 aa4.99□□□□□ -1.61
Clcn3-202ENSMUST00000056508 Notch3Q61982 2318 aa4.98□□□□□ -1.61
Clcn3-202ENSMUST00000056508 Cep295Q8BQ48 2412 aa4.98□□□□□ -1.61
Clcn3-202ENSMUST00000056508 Sptan1P16546 2472 aaKnown RBP4.98□□□□□ -1.61
Clcn3-202ENSMUST00000056508 Kiaa1549Q68FD9 1940 aa4.97□□□□□ -1.61
Clcn3-202ENSMUST00000056508 Gm9573F7C950 1606 aa4.97□□□□□ -1.61
Clcn3-202ENSMUST00000056508 Plac8Q9JI48 112 aa4.97□□□□□ -1.61
Clcn3-202ENSMUST00000056508 Fam208bQ5DTT3 2382 aa4.97□□□□□ -1.61
Clcn3-202ENSMUST00000056508 Armcx4E9PWM3 2356 aa4.95□□□□□ -1.62
Clcn3-202ENSMUST00000056508 Col6a4A2AX52 2309 aa4.95□□□□□ -1.62
Clcn3-202ENSMUST00000056508 Zfhx4Q9JJN2 3550 aa4.94□□□□□ -1.62
Clcn3-202ENSMUST00000056508 Gm11565A2A4M7 156 aa4.94□□□□□ -1.62
Clcn3-202ENSMUST00000056508 AtmQ62388 3066 aa4.93□□□□□ -1.62
Clcn3-202ENSMUST00000056508 Prpf8Q99PV0 2335 aaKnown RBP4.93□□□□□ -1.62
Clcn3-202ENSMUST00000056508 Spink7Q6IE32 76 aa4.92□□□□□ -1.62
Clcn3-202ENSMUST00000056508 Sorl1O88307 2215 aaKnown RBP4.92□□□□□ -1.62
Clcn3-202ENSMUST00000056508 Gm19426M0QWC7 77 aa4.92□□□□□ -1.62
Clcn3-202ENSMUST00000056508 Celsr1O35161 3034 aa4.9□□□□□ -1.63
Clcn3-202ENSMUST00000056508 Jmjd1cQ69ZK6 2350 aa4.89□□□□□ -1.63
Clcn3-202ENSMUST00000056508 Ranbp2Q9ERU9 3053 aaKnown RBP4.89□□□□□ -1.63
Clcn3-202ENSMUST00000056508 FrylF8VQ05 3007 aa4.89□□□□□ -1.63
Clcn3-202ENSMUST00000056508 Col12a1Q60847 3120 aa4.89□□□□□ -1.63
Clcn3-202ENSMUST00000056508 Myo15bI7HPW8 3033 aa4.89□□□□□ -1.63
Clcn3-202ENSMUST00000056508 Lama1P19137 3084 aa4.88□□□□□ -1.63
Clcn3-202ENSMUST00000056508 CenpeQ6RT24 2474 aaKnown RBP4.88□□□□□ -1.63
Clcn3-202ENSMUST00000056508 AcacaQ5SWU9 2345 aa4.88□□□□□ -1.63
Clcn3-202ENSMUST00000056508 Prune2Q52KR3 3084 aa4.87□□□□□ -1.63
Clcn3-202ENSMUST00000056508 Pcnx1Q9QYC1 2344 aa4.86□□□□□ -1.63
Clcn3-202ENSMUST00000056508 Csmd2V9GX34 3611 aa4.85□□□□□ -1.63
Clcn3-202ENSMUST00000056508 2310050C09RikG5E8Z3 280 aa4.84□□□□□ -1.63
Clcn3-202ENSMUST00000056508 Med13lQ6JPI3 2207 aa4.83□□□□□ -1.64
Clcn3-202ENSMUST00000056508 Nav3Q80TN7 2359 aa4.83□□□□□ -1.64
Clcn3-202ENSMUST00000056508 Zfhx2Q2MHN3 2562 aa4.83□□□□□ -1.64
Clcn3-202ENSMUST00000056508 Col4a4Q9QZR9 1682 aa4.83□□□□□ -1.64
Retrieved 100 of 22,080 RNA–protein pairs in 66.7 ms