Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Gm25239-201ENSMUST00000174915 86 ntBASIC36.3■■■■□ 3.4
Col6a6Q8C6K9 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC33.64■■■□□ 2.98
Col6a6Q8C6K9 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
Col6a6Q8C6K9 Gm24109-201ENSMUST00000175489 103 ntBASIC31.68■■■□□ 2.66
Col6a6Q8C6K9 Gm15042-201ENSMUST00000120212 883 ntBASIC31.16■■■□□ 2.58
Col6a6Q8C6K9 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC30.69■■■□□ 2.5
Col6a6Q8C6K9 Gm15045-201ENSMUST00000117359 883 ntBASIC30.57■■■□□ 2.48
Col6a6Q8C6K9 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
Col6a6Q8C6K9 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Col6a6Q8C6K9 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Col6a6Q8C6K9 Gm23366-201ENSMUST00000175022 89 ntBASIC30.09■■■□□ 2.41
Col6a6Q8C6K9 AC153911.1-202ENSMUST00000218534 1034 ntBASIC29.64■■■□□ 2.34
Col6a6Q8C6K9 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC29.39■■■□□ 2.3
Col6a6Q8C6K9 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC29.31■■■□□ 2.28
Col6a6Q8C6K9 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
Col6a6Q8C6K9 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
Col6a6Q8C6K9 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
Col6a6Q8C6K9 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
Col6a6Q8C6K9 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
Col6a6Q8C6K9 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC28.84■■■□□ 2.21
Col6a6Q8C6K9 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Col6a6Q8C6K9 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC28.81■■■□□ 2.2
Col6a6Q8C6K9 Gm25238-201ENSMUST00000174914 89 ntBASIC28.75■■■□□ 2.19
Col6a6Q8C6K9 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
Col6a6Q8C6K9 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Col6a6Q8C6K9 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
Col6a6Q8C6K9 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC28.18■■■□□ 2.1
Col6a6Q8C6K9 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC28.17■■■□□ 2.1
Col6a6Q8C6K9 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC28.11■■■□□ 2.09
Col6a6Q8C6K9 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
Col6a6Q8C6K9 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
Col6a6Q8C6K9 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Col6a6Q8C6K9 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC27.96■■■□□ 2.07
Col6a6Q8C6K9 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC27.86■■■□□ 2.05
Col6a6Q8C6K9 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC27.85■■■□□ 2.05
Col6a6Q8C6K9 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC27.84■■■□□ 2.05
Col6a6Q8C6K9 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC27.74■■■□□ 2.03
Col6a6Q8C6K9 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC27.64■■■□□ 2.02
Col6a6Q8C6K9 Gm25262-201ENSMUST00000174934 133 ntBASIC27.61■■■□□ 2.01
Col6a6Q8C6K9 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
Col6a6Q8C6K9 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC27.48■■□□□ 1.99
Col6a6Q8C6K9 Gm27325-201ENSMUST00000175467 74 ntBASIC27.46■■□□□ 1.99
Col6a6Q8C6K9 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC27.39■■□□□ 1.97
Col6a6Q8C6K9 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC27.37■■□□□ 1.97
Col6a6Q8C6K9 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
Col6a6Q8C6K9 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
Col6a6Q8C6K9 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC27.33■■□□□ 1.97
Col6a6Q8C6K9 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Col6a6Q8C6K9 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC27.19■■□□□ 1.94
Col6a6Q8C6K9 Gm26115-201ENSMUST00000175605 87 ntBASIC27.18■■□□□ 1.94
Col6a6Q8C6K9 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC27.18■■□□□ 1.94
Col6a6Q8C6K9 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Col6a6Q8C6K9 Gm8109-201ENSMUST00000194076 746 ntBASIC27.11■■□□□ 1.93
Col6a6Q8C6K9 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC27.11■■□□□ 1.93
Col6a6Q8C6K9 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC27.08■■□□□ 1.93
Col6a6Q8C6K9 Rab21-202ENSMUST00000218831 843 ntBASIC27.07■■□□□ 1.92
Col6a6Q8C6K9 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
Col6a6Q8C6K9 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
Col6a6Q8C6K9 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
Col6a6Q8C6K9 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC26.85■■□□□ 1.89
Col6a6Q8C6K9 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Col6a6Q8C6K9 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC26.76■■□□□ 1.87
Col6a6Q8C6K9 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
Col6a6Q8C6K9 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC26.71■■□□□ 1.87
Col6a6Q8C6K9 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC26.7■■□□□ 1.87
Col6a6Q8C6K9 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
Col6a6Q8C6K9 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC26.62■■□□□ 1.85
Col6a6Q8C6K9 Psd-208ENSMUST00000224556 2034 ntBASIC26.61■■□□□ 1.85
Col6a6Q8C6K9 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
Col6a6Q8C6K9 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
Col6a6Q8C6K9 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC26.46■■□□□ 1.83
Col6a6Q8C6K9 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC26.39■■□□□ 1.81
Col6a6Q8C6K9 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC26.38■■□□□ 1.81
Col6a6Q8C6K9 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
Col6a6Q8C6K9 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
Col6a6Q8C6K9 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC26.36■■□□□ 1.81
Col6a6Q8C6K9 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Col6a6Q8C6K9 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
Col6a6Q8C6K9 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Col6a6Q8C6K9 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
Col6a6Q8C6K9 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Col6a6Q8C6K9 Gm17082-201ENSMUST00000166043 1091 ntBASIC26.25■■□□□ 1.79
Col6a6Q8C6K9 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Col6a6Q8C6K9 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Col6a6Q8C6K9 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Col6a6Q8C6K9 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC26.03■■□□□ 1.76
Col6a6Q8C6K9 Gm24804-201ENSMUST00000174982 85 ntBASIC26.02■■□□□ 1.76
Col6a6Q8C6K9 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Col6a6Q8C6K9 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
Col6a6Q8C6K9 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC25.99■■□□□ 1.75
Col6a6Q8C6K9 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC25.96■■□□□ 1.75
Col6a6Q8C6K9 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC25.94■■□□□ 1.74
Col6a6Q8C6K9 Gm27322-201ENSMUST00000184007 104 ntBASIC25.92■■□□□ 1.74
Col6a6Q8C6K9 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC25.92■■□□□ 1.74
Col6a6Q8C6K9 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC25.91■■□□□ 1.74
Col6a6Q8C6K9 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Col6a6Q8C6K9 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC25.9■■□□□ 1.74
Col6a6Q8C6K9 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC25.9■■□□□ 1.74
Col6a6Q8C6K9 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Col6a6Q8C6K9 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms