Protein–RNA interactions for Protein: O35600

Abca4, Retinal-specific ATP-binding cassette transporter, mousemouse

Predictions only

Length 2,310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Abca4O35600 Gm25239-201ENSMUST00000174915 86 ntBASIC39.58■■■■□ 3.93
Abca4O35600 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC36.93■■■■□ 3.5
Abca4O35600 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC36.36■■■■□ 3.41
Abca4O35600 Gm24109-201ENSMUST00000175489 103 ntBASIC34.8■■■■□ 3.16
Abca4O35600 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC33.51■■■□□ 2.95
Abca4O35600 Gm15042-201ENSMUST00000120212 883 ntBASIC33.48■■■□□ 2.95
Abca4O35600 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC33.48■■■□□ 2.95
Abca4O35600 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC33.42■■■□□ 2.94
Abca4O35600 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
Abca4O35600 AC153911.1-202ENSMUST00000218534 1034 ntBASIC32.77■■■□□ 2.84
Abca4O35600 Gm23366-201ENSMUST00000175022 89 ntBASIC32.76■■■□□ 2.83
Abca4O35600 Gm15045-201ENSMUST00000117359 883 ntBASIC32.74■■■□□ 2.83
Abca4O35600 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
Abca4O35600 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
Abca4O35600 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC32.45■■■□□ 2.78
Abca4O35600 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC32.32■■■□□ 2.76
Abca4O35600 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Abca4O35600 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC31.65■■■□□ 2.66
Abca4O35600 Gm25238-201ENSMUST00000174914 89 ntBASIC31.54■■■□□ 2.64
Abca4O35600 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
Abca4O35600 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Abca4O35600 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC31.15■■■□□ 2.58
Abca4O35600 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
Abca4O35600 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC30.78■■■□□ 2.52
Abca4O35600 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC30.71■■■□□ 2.51
Abca4O35600 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC30.62■■■□□ 2.49
Abca4O35600 Gm25262-201ENSMUST00000174934 133 ntBASIC30.56■■■□□ 2.48
Abca4O35600 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC30.44■■■□□ 2.46
Abca4O35600 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC30.29■■■□□ 2.44
Abca4O35600 Gm26115-201ENSMUST00000175605 87 ntBASIC30.29■■■□□ 2.44
Abca4O35600 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC30.23■■■□□ 2.43
Abca4O35600 Gm8109-201ENSMUST00000194076 746 ntBASIC30.08■■■□□ 2.41
Abca4O35600 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC30.08■■■□□ 2.41
Abca4O35600 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC29.97■■■□□ 2.39
Abca4O35600 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
Abca4O35600 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
Abca4O35600 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC29.86■■■□□ 2.37
Abca4O35600 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
Abca4O35600 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC29.7■■■□□ 2.34
Abca4O35600 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
Abca4O35600 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC29.53■■■□□ 2.32
Abca4O35600 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC29.51■■■□□ 2.32
Abca4O35600 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
Abca4O35600 Gm27325-201ENSMUST00000175467 74 ntBASIC29.4■■■□□ 2.3
Abca4O35600 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
Abca4O35600 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
Abca4O35600 Rab21-202ENSMUST00000218831 843 ntBASIC29.33■■■□□ 2.29
Abca4O35600 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
Abca4O35600 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC29.19■■■□□ 2.26
Abca4O35600 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC29.14■■■□□ 2.25
Abca4O35600 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC29.09■■■□□ 2.25
Abca4O35600 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
Abca4O35600 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC29.06■■■□□ 2.24
Abca4O35600 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
Abca4O35600 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC29■■■□□ 2.23
Abca4O35600 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC28.94■■■□□ 2.22
Abca4O35600 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
Abca4O35600 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC28.9■■■□□ 2.22
Abca4O35600 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
Abca4O35600 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC28.87■■■□□ 2.21
Abca4O35600 Gm24804-201ENSMUST00000174982 85 ntBASIC28.86■■■□□ 2.21
Abca4O35600 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
Abca4O35600 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
Abca4O35600 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC28.76■■■□□ 2.19
Abca4O35600 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
Abca4O35600 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
Abca4O35600 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Abca4O35600 Gm17082-201ENSMUST00000166043 1091 ntBASIC28.59■■■□□ 2.17
Abca4O35600 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC28.57■■■□□ 2.16
Abca4O35600 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC28.57■■■□□ 2.16
Abca4O35600 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC28.57■■■□□ 2.16
Abca4O35600 Zfp131-205ENSMUST00000223812 663 ntBASIC28.52■■■□□ 2.16
Abca4O35600 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Abca4O35600 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Abca4O35600 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC28.44■■■□□ 2.14
Abca4O35600 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
Abca4O35600 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC28.36■■■□□ 2.13
Abca4O35600 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
Abca4O35600 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC28.32■■■□□ 2.12
Abca4O35600 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Abca4O35600 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC28.29■■■□□ 2.12
Abca4O35600 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC28.28■■■□□ 2.12
Abca4O35600 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Abca4O35600 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC28.25■■■□□ 2.11
Abca4O35600 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
Abca4O35600 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Abca4O35600 Gm27322-201ENSMUST00000184007 104 ntBASIC28.18■■■□□ 2.1
Abca4O35600 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC28.13■■■□□ 2.09
Abca4O35600 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC28.09■■■□□ 2.09
Abca4O35600 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
Abca4O35600 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
Abca4O35600 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Abca4O35600 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC27.97■■■□□ 2.07
Abca4O35600 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC27.96■■■□□ 2.07
Abca4O35600 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC27.95■■■□□ 2.06
Abca4O35600 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC27.93■■■□□ 2.06
Abca4O35600 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
Abca4O35600 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC27.92■■■□□ 2.06
Abca4O35600 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC27.88■■■□□ 2.05
Abca4O35600 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
Retrieved 100 of 76,532 protein–RNA pairs in 14.2 ms